Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 3.4e-305 1050.8 527 100.0
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 2.0e-292 1008.4 527 95.8
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 2.3e-240 835.5 527 78.6
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 6.9e-205 717.6 529 68.8
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 6.7e-184 647.9 526 63.1
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 5.3e-181 638.3 526 66.0
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 2.7e-177 625.9 526 61.0
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.6e-177 625.5 326 96.0
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 1.4e-176 623.6 528 60.6
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 5.7e-175 618.2 511 65.9
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 2.2e-174 616.3 526 59.9
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.9e-171 605.9 531 60.1
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 4.2e-170 602.1 531 59.7
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 3.6e-169 599.0 528 59.1
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 6.1e-169 598.2 533 58.2
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.1e-165 587.4 530 56.2
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 5.9e-164 581.6 532 58.1
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.3e-163 579.7 527 55.6
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.9e-162 576.6 532 57.9
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 1.6e-156 557.0 535 54.2
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.3e-155 553.1 526 54.6
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 1.9e-154 550.1 531 54.8
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.3e-154 548.1 533 56.7
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.2e-153 547.4 535 53.6
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.4e-152 543.9 529 52.7
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.0e-151 540.0 533 53.8
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 1.7e-150 537.0 528 51.9
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.7e-150 537.0 533 52.0
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 3.7e-150 535.8 528 52.1
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.7e-147 526.9 527 51.0
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.9e-146 523.5 534 51.7
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 1.2e-145 520.8 525 50.7
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 2.1e-145 520.0 528 51.5
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 2.8e-145 519.6 533 51.6
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 4.0e-144 515.8 534 50.6
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 5.2e-144 515.4 537 49.9
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 6.8e-144 515.0 529 51.0
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 2.6e-143 513.1 530 49.6
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 4.4e-143 512.3 527 51.0
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 5.8e-143 511.9 531 49.9
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 2.9e-142 509.6 534 49.8
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 4.6e-140 502.3 534 50.6
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 1.0e-139 501.1 537 49.7
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 3.0e-139 499.6 537 51.2
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 6.6e-139 498.4 528 49.6
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 1.1e-136 491.1 532 49.6
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 1.4e-136 490.7 536 49.6
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 3.1e-136 489.6 529 49.1
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 5.8e-135 485.3 524 48.7
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 9.9e-135 484.6 531 47.6
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 1.7e-134 483.8 526 50.0
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 4.9e-134 482.3 533 49.3
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 2.4e-133 479.9 524 48.7
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.1e-133 479.2 536 47.0
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.4e-133 478.8 527 49.7
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.2e-132 477.6 534 47.6
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.7e-132 476.5 527 49.9
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 2.7e-132 476.5 537 48.0
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 6.0e-132 475.3 533 47.7
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.0e-131 474.6 527 49.7
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.3e-131 474.2 522 46.6
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 2.3e-131 473.4 523 49.3
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 3.9e-131 472.6 527 50.1
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 6.6e-131 471.9 520 49.8
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.6e-131 471.5 524 49.4
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.1e-130 471.1 523 49.1
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.9e-130 470.3 524 49.2
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.6e-129 467.2 521 49.1
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.1e-128 464.5 535 46.2
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.4e-128 464.2 536 45.7
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 8.9e-128 461.5 548 46.4
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 8.9e-128 461.5 519 48.6
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 5.8e-127 458.8 543 45.9
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 5.8e-127 458.8 525 48.4
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 2.2e-126 456.8 532 46.6
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 2.4e-125 453.4 450 51.1
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 1.0e-123 448.0 529 45.7
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 3.9e-123 446.0 529 45.6
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 1.5e-122 444.1 527 47.2
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 5.6e-122 442.2 530 46.0
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 9.6e-122 441.4 534 45.7
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 3.6e-121 439.5 529 45.0
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 5.8e-119 432.2 547 45.7
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.3e-118 431.0 586 45.6
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 2.9e-118 429.9 529 44.2
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 5.4e-117 425.6 546 44.9
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 6.6e-115 418.7 467 48.6
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 4.3e-114 416.0 526 44.5
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 3.4e-111 406.4 539 44.2
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 2.2e-110 403.7 446 49.6
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 2.9e-110 403.3 531 42.9
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.0e-107 394.8 412 50.7
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 9.6e-106 388.3 522 41.8
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 2.8e-105 386.7 523 42.1
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 3.7e-105 386.3 522 42.1
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 1.1e-104 384.8 551 41.4
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.4e-104 384.4 527 41.2
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.7e-102 377.5 522 41.0
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.7e-102 377.5 522 41.0
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.7e-102 377.5 522 41.0
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 2.3e-99 367.1 534 41.4
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 3.9e-99 366.3 529 39.5
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 1.7e-94 350.9 481 44.3
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 7.9e-92 342.0 428 47.0
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 6.3e-81 305.8 538 36.4
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.1e-80 303.1 579 35.8
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.2e-78 297.4 612 32.2
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 6.5e-78 295.8 295 50.2
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 5.1e-75 286.2 281 52.3
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 4.5e-71 273.1 322 47.8
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.2e-69 266.5 303 49.2
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.8e-67 261.2 228 56.1
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 3.0e-67 260.4 311 46.6
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 6.3e-65 252.7 410 39.8
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 7.7e-55 219.2 125 87.2
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 1.3e-54 218.4 547 30.2
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.2e-47 195.3 567 28.9
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 1.6e-47 194.9 544 28.5
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 1.2e-42 178.7 289 37.0
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 5.9e-39 166.4 197 43.1
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 3.3e-37 160.6 551 26.9
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 4.3e-37 160.2 313 32.9
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.2e-34 152.1 411 29.4
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 1.5e-29 135.2 204 37.3
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 3.4e-26 124.0 130 48.5
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 1.6e-20 105.1 288 29.2
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 2.3e-19 101.3 105 45.7
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 1.5e-18 98.6 103 48.5
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 5.4e-16 90.1 91 47.3
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 3.0e-14 84.3 212 29.2
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 3.9e-14 84.0 212 29.2
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.1e-13 82.4 224 29.9
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 7.3e-13 79.7 69 60.9
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.8e-12 77.8 96 42.7
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.4e-10 70.5 185 31.9
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-09 68.9 185 31.4
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 2.9e-09 67.8 62 48.4
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.4e-09 66.6 72 55.6
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 8.4e-09 66.2 155 34.2
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 1.4e-08 65.5 190 26.3
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 5.4e-08 63.5 66 42.4
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 7.8e-07 59.7 159 26.4
Nitab4.5_0001189g0060 Nicotiana tabacum HOM05D002338 ORTHO05D006102 7.8e-07 59.7 50 54.0
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.3e-06 58.2 55 47.3


User provided reference genes

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