Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003744 Solanum tuberosum HOM05D003609 ORTHO05D004185 3.0e-148 528.5 262 100.0
CAN.G371.123 Capsicum annuum HOM05D003609 ORTHO05D004185 7.2e-70 268.1 282 53.5
CAN.G1126.16 Capsicum annuum HOM05D003609 ORTHO05D004185 2.3e-68 263.1 280 52.1
Nitab4.5_0005101g0010 Nicotiana tabacum HOM05D003609 ORTHO05D004185 2.2e-63 246.5 282 49.6
Nitab4.5_0001633g0010 Nicotiana tabacum HOM05D003609 ORTHO05D004185 3.8e-55 219.2 284 46.8
Peaxi162Scf00213g01216 Petunia axillaris HOM05D003609 ORTHO05D004185 6.6e-55 218.4 285 47.0
Peaxi162Scf00155g01114 Petunia axillaris HOM05D003609 ORTHO05D004185 1.5e-54 217.2 284 46.5
CAN.G1437.4 Capsicum annuum HOM05D003609 ORTHO05D004185 1.9e-54 216.9 284 45.8
Nitab4.5_0000100g0230 Nicotiana tabacum HOM05D003609 ORTHO05D004185 3.3e-54 216.1 279 47.0
Solyc02g021650.3 Solanum lycopersicum HOM05D003609 ORTHO05D004185 3.3e-54 216.1 284 45.8
Sopen02g006220 Solanum pennellii HOM05D003609 ORTHO05D004185 3.3e-54 216.1 284 45.8
Lj2C325T8 Lonicera japonica HOM05D003609 ORTHO05D004185 2.0e-51 206.8 288 44.8
MELO3C002793.2 Cucumis melo HOM05D003609 ORTHO05D004185 2.6e-51 206.5 284 44.7
CsaV3_1G037020 Cucumis sativus L. HOM05D003609 ORTHO05D004185 2.6e-51 206.5 284 44.7
Sed0022224 Sechium edule HOM05D003609 ORTHO05D004185 2.6e-51 206.5 284 44.4
ClCG03G006390 Citrullus lanatus HOM05D003609 ORTHO05D004185 3.4e-51 206.1 284 44.7
Ciclev10014106m.g Citrus clementina HOM05D003609 ORTHO05D004185 3.4e-51 206.1 287 45.3
SGA_v2.0_scaffold223G42845 Striga asiatica HOM05D003609 ORTHO05D004185 3.4e-51 206.1 284 45.4
Cfa000850 Carpinus fangiana HOM05D003609 ORTHO05D004185 4.4e-51 205.7 284 45.1
CiPaw.10G086600 Carya illinoinensis HOM05D003609 ORTHO05D004185 4.4e-51 205.7 284 45.8
VMungo0251G1043 Vigna mungo HOM05D003609 ORTHO05D004185 5.7e-51 205.3 284 45.4
COL.COLO4_17669 Corchorus olitorius HOM05D003609 ORTHO05D004185 7.5e-51 204.9 287 44.6
Oeu015191.1 Olea europaea HOM05D003609 ORTHO05D004185 7.5e-51 204.9 284 44.7
Eucgr.H04822 Eucalyptus grandis HOM05D003609 ORTHO05D004185 9.8e-51 204.5 288 44.4
Gohir.D02G238300 Gossypium hirsutum HOM05D003609 ORTHO05D004185 9.8e-51 204.5 286 44.1
DCAR_027872 Daucus carota HOM05D003609 ORTHO05D004185 1.3e-50 204.1 288 44.1
Gorai.005G266800 Gossypium raimondii HOM05D003609 ORTHO05D004185 1.3e-50 204.1 287 44.3
Cpa.g.sc17.69 Carica papaya HOM05D003609 ORTHO05D004185 1.7e-50 203.8 283 45.2
Gohir.A03G216700 Gossypium hirsutum HOM05D003609 ORTHO05D004185 1.7e-50 203.8 287 43.9
Lsat_1_v5_gn_7_31981 Lactuca sativa HOM05D003609 ORTHO05D004185 1.7e-50 203.8 284 44.7
Medtr8g089380 Medicago truncatula HOM05D003609 ORTHO05D004185 1.7e-50 203.8 284 45.1
TAR626G0448 Trochodendron aralioides HOM05D003609 ORTHO05D004185 1.7e-50 203.8 284 44.4
ECA236G2324 Erigeron canadensis HOM05D003609 ORTHO05D004185 2.2e-50 203.4 284 44.7
Phvul.002G252300 Phaseolus vulgaris HOM05D003609 ORTHO05D004185 2.2e-50 203.4 284 45.1
RcHm_v2.0_Chr5g0015371 Rosa chinensis HOM05D003609 ORTHO05D004185 2.2e-50 203.4 284 44.4
Dinv32197 Davidia involucrata HOM05D003609 ORTHO05D004185 2.8e-50 203.0 284 44.4
FAN25G3439 Fragaria x ananassa HOM05D003609 ORTHO05D004185 2.8e-50 203.0 284 44.0
Hund21559 Selenicereus undatus HOM05D003609 ORTHO05D004185 2.8e-50 203.0 284 45.1
Thecc.02G010900 Theobroma cacao HOM05D003609 ORTHO05D004185 2.8e-50 203.0 287 44.3
HPP92_020750 Vanilla planifolia HOM05D003609 ORTHO05D004185 2.8e-50 203.0 288 45.5
AT4G05420 Arabidopsis thaliana HOM05D003609 ORTHO05D004185 3.7e-50 202.6 290 44.1
MSTRG.16279 Avicennia marina HOM05D003609 ORTHO05D004185 3.7e-50 202.6 284 45.1
Ca_17799_v3 Cicer arietinum L. HOM05D003609 ORTHO05D004185 3.7e-50 202.6 283 44.5
FvH4_3g09700 Fragaria vesca HOM05D003609 ORTHO05D004185 3.7e-50 202.6 284 44.0
FAN11G0451 Fragaria x ananassa HOM05D003609 ORTHO05D004185 3.7e-50 202.6 284 44.0
FAN16G3689 Fragaria x ananassa HOM05D003609 ORTHO05D004185 3.7e-50 202.6 284 44.0
FAN21G1100 Fragaria x ananassa HOM05D003609 ORTHO05D004185 3.7e-50 202.6 284 44.0
HanXRQChr04g0113571 Helianthus annuus HOM05D003609 ORTHO05D004185 3.7e-50 202.6 284 44.7
Lalb_Chr07g0185651 Lupinus albus HOM05D003609 ORTHO05D004185 3.7e-50 202.6 284 45.1
Manes.06G061000 Manihot esculenta HOM05D003609 ORTHO05D004185 3.7e-50 202.6 287 44.3
Nn2g14648 Nelumbo nucifera HOM05D003609 ORTHO05D004185 3.7e-50 202.6 284 45.1
Psat7g060520 Pisum sativum HOM05D003609 ORTHO05D004185 3.7e-50 202.6 284 44.4
TAR624G1151 Trochodendron aralioides HOM05D003609 ORTHO05D004185 3.7e-50 202.6 288 44.1
arahy.Tifrunner.gnm1.ann1.1CC5MB Arachis hypogaea HOM05D003609 ORTHO05D004185 4.9e-50 202.2 284 45.1
CSS0002848 Camellia sinensis var. sinensis HOM05D003609 ORTHO05D004185 4.9e-50 202.2 284 43.7
CSS0039412 Camellia sinensis var. sinensis HOM05D003609 ORTHO05D004185 4.9e-50 202.2 284 43.7
Glyma.U031908 Glycine max HOM05D003609 ORTHO05D004185 4.9e-50 202.2 284 45.1
Aa31LG9G9160 Aethionema arabicum HOM05D003609 ORTHO05D004185 6.3e-50 201.8 283 44.9
Hma1.2p1_1418F.1_g282240 Hydrangea macrophylla HOM05D003609 ORTHO05D004185 6.3e-50 201.8 284 44.4
Lj6g0025210 Lotus japonicus HOM05D003609 ORTHO05D004185 6.3e-50 201.8 283 45.2
PGR031G0855 Punica granatum HOM05D003609 ORTHO05D004185 6.3e-50 201.8 288 44.1
QL11p001509 Quercus lobata HOM05D003609 ORTHO05D004185 6.3e-50 201.8 284 44.0
TWI73G0261 Tripterygium wilfordii HOM05D003609 ORTHO05D004185 6.3e-50 201.8 287 44.3
Ah.14g086230 Amaranthus hybridus HOM05D003609 ORTHO05D004185 8.3e-50 201.4 284 44.7
HanXRQChr15g0481541 Helianthus annuus HOM05D003609 ORTHO05D004185 8.3e-50 201.4 284 44.0
SalBow8G0777 Salvia bowleyana HOM05D003609 ORTHO05D004185 8.3e-50 201.4 284 44.7
GSVIVG01021587001 Vitis vinifera HOM05D003609 ORTHO05D004185 8.3e-50 201.4 284 44.7
arahy.Tifrunner.gnm1.ann1.UWD6C2 Arachis hypogaea HOM05D003609 ORTHO05D004185 1.1e-49 201.1 283 44.9
BcaC04g21393 Brassica carinata HOM05D003609 ORTHO05D004185 1.1e-49 201.1 290 43.8
A09p25340 Brassica napus HOM05D003609 ORTHO05D004185 1.1e-49 201.1 290 43.8
C09p32340 Brassica napus HOM05D003609 ORTHO05D004185 1.1e-49 201.1 290 43.8
BolC9t56079H Brassica oleracea HOM05D003609 ORTHO05D004185 1.1e-49 201.1 290 43.8
BraA09t38116Z Brassica rapa HOM05D003609 ORTHO05D004185 1.1e-49 201.1 290 43.8
Potri.001G357900 Populus trichocarpa HOM05D003609 ORTHO05D004185 1.1e-49 201.1 282 44.3
Actinidia07464 Actinidia chinensis HOM05D003609 ORTHO05D004185 1.4e-49 200.7 284 44.0
AL6G49010 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 1.4e-49 200.7 290 43.8
QL07p044690 Quercus lobata HOM05D003609 ORTHO05D004185 1.8e-49 200.3 284 43.7
TPR.G6260 Trifolium pratense HOM05D003609 ORTHO05D004185 1.8e-49 200.3 284 44.4
QL11p001978 Quercus lobata HOM05D003609 ORTHO05D004185 2.4e-49 199.9 267 44.6
AUR62042468 Chenopodium quinoa HOM05D003609 ORTHO05D004185 3.2e-49 199.5 288 44.1
AUR62042762 Chenopodium quinoa HOM05D003609 ORTHO05D004185 3.2e-49 199.5 288 44.1
Migut.M01878 Erythranthe guttata HOM05D003609 ORTHO05D004185 3.2e-49 199.5 284 44.0
Sp6g03670 Schrenkiella parvula HOM05D003609 ORTHO05D004185 3.2e-49 199.5 290 43.8
MD00G1109600 Malus domestica HOM05D003609 ORTHO05D004185 4.1e-49 199.1 284 44.0
MD05G1276000 Malus domestica HOM05D003609 ORTHO05D004185 4.1e-49 199.1 284 44.4
Nn7g36935 Nelumbo nucifera HOM05D003609 ORTHO05D004185 4.1e-49 199.1 284 43.7
Prupe.4G088300 Prunus persica HOM05D003609 ORTHO05D004185 4.1e-49 199.1 284 44.7
Sc17g0004700 Simmondsia chinensis HOM05D003609 ORTHO05D004185 4.1e-49 199.1 285 44.6
CANSAT35G1843 Cannabis sativa HOM05D003609 ORTHO05D004185 7.0e-49 198.4 286 44.1
Carub.0006s3333 Capsella rubella HOM05D003609 ORTHO05D004185 7.0e-49 198.4 283 43.5
THA.LOC104812376 Tarenaya hassleriana HOM05D003609 ORTHO05D004185 7.0e-49 198.4 283 43.8
Atru.chr10.947 Acer truncatum HOM05D003609 ORTHO05D004185 9.2e-49 198.0 283 42.4
EL10Ac9g22433 Beta vulgaris HOM05D003609 ORTHO05D004185 9.2e-49 198.0 289 44.3
Thhalv10028374m.g Eutrema salsugineum HOM05D003609 ORTHO05D004185 9.2e-49 198.0 290 43.4
Lj4g0015667 Lotus japonicus HOM05D003609 ORTHO05D004185 9.2e-49 198.0 284 44.4
CARHR252160 Cardamine hirsuta HOM05D003609 ORTHO05D004185 1.2e-48 197.6 290 43.8
Duzib132G0117 Durio zibethinus HOM05D003609 ORTHO05D004185 1.2e-48 197.6 283 44.9
Duzib248G1499 Durio zibethinus HOM05D003609 ORTHO05D004185 1.2e-48 197.6 287 44.3
BolC3t20633H Brassica oleracea HOM05D003609 ORTHO05D004185 1.6e-48 197.2 283 43.5
MBI18_g10584_MAGBIO Magnolia biondii HOM05D003609 ORTHO05D004185 1.6e-48 197.2 285 44.6
CDE02G3832 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 2.0e-48 196.8 288 43.8
BcaC01g00716 Brassica carinata HOM05D003609 ORTHO05D004185 2.7e-48 196.4 282 43.6
A08p15280 Brassica napus HOM05D003609 ORTHO05D004185 2.7e-48 196.4 282 43.6
BraA08t33506Z Brassica rapa HOM05D003609 ORTHO05D004185 2.7e-48 196.4 282 43.6
CDE01G0431 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 2.7e-48 196.4 288 43.8
EL10Ac8g19595 Beta vulgaris HOM05D003609 ORTHO05D004185 3.5e-48 196.1 284 43.7
Rhsim13G0119500 Rhododendron simsii HOM05D003609 ORTHO05D004185 3.5e-48 196.1 284 43.0
PSO541G5911 Papaver somniferum HOM05D003609 ORTHO05D004185 4.5e-48 195.7 284 43.3
Atru.chr10.957 Acer truncatum HOM05D003609 ORTHO05D004185 5.9e-48 195.3 283 43.5
Aqoxy1G01653 Aquilegia oxysepala HOM05D003609 ORTHO05D004185 5.9e-48 195.3 288 42.7
CARHR227680 Cardamine hirsuta HOM05D003609 ORTHO05D004185 5.9e-48 195.3 282 43.3
PSO675G5242 Papaver somniferum HOM05D003609 ORTHO05D004185 1.0e-47 194.5 284 43.0
vmacro03407 Vaccinium macrocarpon HOM05D003609 ORTHO05D004185 1.3e-47 194.1 284 43.0
Sabra16G0235700 Salix brachista HOM05D003609 ORTHO05D004185 2.3e-47 193.4 308 40.9
Os05g0592400 Oryza sativa ssp. japonica HOM05D003609 ORTHO05D004185 2.9e-47 193.0 284 43.0
Mapoly0054s0064 Marchantia polymorpha HOM05D003609 ORTHO05D004185 5.0e-47 192.2 289 42.9
ATR0594G240 Amborella trichopoda HOM05D003609 ORTHO05D004185 6.6e-47 191.8 284 42.6
AL7G33030 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 6.6e-47 191.8 282 42.6
C03p83520 Brassica napus HOM05D003609 ORTHO05D004185 6.6e-47 191.8 282 43.3
Carub.0007s2033 Capsella rubella HOM05D003609 ORTHO05D004185 6.6e-47 191.8 282 42.6
Zm00001eb297320 Zea mays HOM05D003609 ORTHO05D004185 6.6e-47 191.8 283 43.1
Sp7g19180 Schrenkiella parvula HOM05D003609 ORTHO05D004185 8.6e-47 191.4 282 42.9
Zm00001eb345240 Zea mays HOM05D003609 ORTHO05D004185 1.5e-46 190.7 283 43.1
Duzib132G1150 Durio zibethinus HOM05D003609 ORTHO05D004185 3.3e-46 189.5 285 43.9
Thhalv10024273m.g Eutrema salsugineum HOM05D003609 ORTHO05D004185 1.6e-45 187.2 282 41.5
AT4G21100 Arabidopsis thaliana HOM05D003609 ORTHO05D004185 8.9e-44 181.4 282 41.1
SMO119G0053 Selaginella moellendorffii HOM05D003609 ORTHO05D004185 4.4e-43 179.1 285 40.7
Atru.chr10.953 Acer truncatum HOM05D003609 ORTHO05D004185 5.8e-43 178.7 300 40.3
Pp3c15_18160 Physcomitrium patens HOM05D003609 ORTHO05D004185 1.7e-42 177.2 285 41.4
Haze_05753 Corylus avellana HOM05D003609 ORTHO05D004185 4.9e-42 175.6 181 53.6
Pp3c9_22270 Physcomitrium patens HOM05D003609 ORTHO05D004185 3.2e-41 172.9 285 40.7
SHI01957 Sapria himalayana HOM05D003609 ORTHO05D004185 5.4e-41 172.2 259 42.5
Peaxi162Scf00296g01317 Petunia axillaris HOM05D003609 ORTHO05D004185 2.1e-37 160.2 265 40.4
arahy.Tifrunner.gnm1.ann1.92D3LZ Arachis hypogaea HOM05D003609 ORTHO05D004185 2.0e-35 153.7 279 38.0
CBR_g19725 Chara braunii HOM05D003609 ORTHO05D004185 7.1e-33 145.2 202 43.6
MCO15G425 Micromonas commoda HOM05D003609 ORTHO05D004185 3.0e-31 139.8 280 36.1
CARHR131210 Cardamine hirsuta HOM05D003609 ORTHO05D004185 2.5e-30 136.7 276 37.7
Migut.J01122 Erythranthe guttata HOM05D003609 ORTHO05D004185 7.3e-30 135.2 277 33.9
CAN.G17306.1 Capsicum annuum HOM05D003609 ORTHO05D004185 3.7e-26 122.9 102 64.7
PRCOL_00006815 Prasinoderma coloniale HOM05D003609 ORTHO05D004185 9.2e-25 118.2 310 30.3
CAN.G17019.1 Capsicum annuum HOM05D003609 ORTHO05D004185 1.2e-24 117.9 100 61.0
BolC3t17691H Brassica oleracea HOM05D003609 ORTHO05D004185 6.6e-23 112.1 267 31.8
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 9.6e-22 108.2 143 44.8
AagrBONN_evm.TU.Sc2ySwM_228.4774 Anthoceros agrestis HOM05D003609 ORTHO05D004185 2.4e-20 103.6 189 37.0
Actinidia23239 Actinidia chinensis HOM05D003609 ORTHO05D004185 1.4e-17 94.4 194 38.1
AL5G26110 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 3.0e-15 86.7 232 29.3
Carub.0006s3125 Capsella rubella HOM05D003609 ORTHO05D004185 1.2e-11 74.7 131 38.2
CDE01G0609 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 2.2e-10 70.5 80 47.5
Haze_26269 Corylus avellana HOM05D003609 ORTHO05D004185 1.1e-09 68.2 197 27.9
Glyma.12G078402 Glycine max HOM05D003609 ORTHO05D004185 7.1e-09 65.5 140 35.0
Lsat_1_v5_gn_8_16520 Lactuca sativa HOM05D003609 ORTHO05D004185 1.3e-07 61.2 64 56.2


User provided reference genes

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