Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001882 Solanum tuberosum HOM05D000084 ORTHO05D002966 1.0e-55 220.3 152 100.0
Solyc04g056280.4 Solanum lycopersicum HOM05D000084 ORTHO05D002966 5.0e-55 218.0 152 99.3
Sopen04g025170 Solanum pennellii HOM05D000084 ORTHO05D002966 5.0e-55 218.0 152 99.3
CAN.G18.9 Capsicum annuum HOM05D000084 ORTHO05D002966 8.5e-47 190.7 152 68.4
Peaxi162Scf01101g00007 Petunia axillaris HOM05D000084 ORTHO05D002966 1.1e-46 190.3 154 77.3
Nitab4.5_0000083g0230 Nicotiana tabacum HOM05D000084 ORTHO05D002966 1.3e-42 176.8 154 74.0
Nitab4.5_0001929g0060 Nicotiana tabacum HOM05D000084 ORTHO05D002966 4.7e-37 158.3 150 67.3
Actinidia20014 Actinidia chinensis HOM05D000084 ORTHO05D002966 2.4e-33 146.0 156 54.5
Actinidia06566 Actinidia chinensis HOM05D000084 ORTHO05D002966 2.0e-32 142.9 156 52.6
Dinv21902 Davidia involucrata HOM05D000084 ORTHO05D002966 1.3e-31 140.2 156 51.3
Lj2C549T2 Lonicera japonica HOM05D000084 ORTHO05D002966 2.1e-29 132.9 156 53.2
Hma1.2p1_1841F.1_g304980 Hydrangea macrophylla HOM05D000084 ORTHO05D002966 3.6e-29 132.1 158 51.9
Ciclev10025386m.g Citrus clementina HOM05D000084 ORTHO05D002966 1.4e-28 130.2 152 57.2
QL06p049339 Quercus lobata HOM05D000084 ORTHO05D002966 1.8e-28 129.8 156 49.4
CiPaw.04G100300 Carya illinoinensis HOM05D000084 ORTHO05D002966 2.0e-27 126.3 156 47.4
CiPaw.03G142400 Carya illinoinensis HOM05D000084 ORTHO05D002966 3.4e-27 125.6 155 48.4
CSS0036261 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D002966 4.4e-27 125.2 158 59.5
Hma1.2p1_1428F.1_g282931 Hydrangea macrophylla HOM05D000084 ORTHO05D002966 7.5e-27 124.4 158 50.6
Haze_24924 Corylus avellana HOM05D000084 ORTHO05D002966 1.7e-26 123.2 156 47.4
Cfa002654 Carpinus fangiana HOM05D000084 ORTHO05D002966 9.1e-25 117.5 155 47.1
MBI02_g35767_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D002966 2.9e-23 112.5 156 53.2
Oeu053548.1 Olea europaea HOM05D000084 ORTHO05D002966 1.5e-22 110.2 154 50.6
TAR633G2569 Trochodendron aralioides HOM05D000084 ORTHO05D002966 3.2e-22 109.0 157 48.4
TAR633G2722 Trochodendron aralioides HOM05D000084 ORTHO05D002966 3.2e-22 109.0 157 48.4
Aqoxy6G00785 Aquilegia oxysepala HOM05D000084 ORTHO05D002966 9.5e-22 107.5 156 50.6
Nn2g14696 Nelumbo nucifera HOM05D000084 ORTHO05D002966 9.5e-22 107.5 156 51.9
Lalb_Chr10g0106011 Lupinus albus HOM05D000084 ORTHO05D002966 8.0e-21 104.4 157 48.4
Glyma.02G276000 Glycine max HOM05D000084 ORTHO05D002966 1.4e-20 103.6 159 49.7
vmacro12960 Vaccinium macrocarpon HOM05D000084 ORTHO05D002966 6.8e-20 101.3 159 45.3
TPR.G34633 Trifolium pratense HOM05D000084 ORTHO05D002966 8.8e-20 100.9 164 50.0
ATR0763G285 Amborella trichopoda HOM05D000084 ORTHO05D002966 2.0e-19 99.8 166 44.6
Eucgr.J00650 Eucalyptus grandis HOM05D000084 ORTHO05D002966 2.0e-19 99.8 161 49.7
ECA232G4799 Erigeron canadensis HOM05D000307 ORTHO05D000166 2.6e-19 99.4 164 44.5
Rhsim10G0163300 Rhododendron simsii HOM05D000084 ORTHO05D002966 3.4e-19 99.0 159 43.4
Gohir.D08G168400 Gossypium hirsutum HOM05D000084 ORTHO05D002966 9.8e-19 97.4 158 55.7
Gorai.004G175700 Gossypium raimondii HOM05D000084 ORTHO05D002966 9.8e-19 97.4 158 55.7
Migut.H02355 Erythranthe guttata HOM05D000084 ORTHO05D002966 1.3e-18 97.1 164 47.0
Thhalv10013327m.g Eutrema salsugineum HOM05D000084 ORTHO05D002966 2.2e-18 96.3 157 44.6
CSS0001448 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D002966 2.8e-18 95.9 163 51.5
CSS0029019 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D002966 2.8e-18 95.9 163 51.5
CARHR203030 Cardamine hirsuta HOM05D000084 ORTHO05D002966 2.8e-18 95.9 157 43.9
TAR381G1381 Trochodendron aralioides HOM05D000084 ORTHO05D002966 2.8e-18 95.9 155 52.3
Eucgr.I00437 Eucalyptus grandis HOM05D000084 ORTHO05D002966 4.9e-18 95.1 161 41.6
Gohir.A08G147200 Gossypium hirsutum HOM05D000084 ORTHO05D002966 4.9e-18 95.1 158 54.4
MSTRG.23346 Avicennia marina HOM05D000084 ORTHO05D002966 6.3e-18 94.7 155 46.5
Sc16g0010790 Simmondsia chinensis HOM05D000084 ORTHO05D002966 1.1e-17 94.0 154 53.2
BcaB08g37122 Brassica carinata HOM05D000084 ORTHO05D002966 1.8e-17 93.2 155 43.9
HanXRQChr11g0322641 Helianthus annuus HOM05D000084 ORTHO05D002966 3.1e-17 92.4 164 42.1
COL.COLO4_16719 Corchorus olitorius HOM05D000084 ORTHO05D002966 5.4e-17 91.7 159 49.1
Potri.012G003700 Populus trichocarpa HOM05D000084 ORTHO05D002966 9.2e-17 90.9 156 50.6
CDE04G3298 Ceratophyllum demersum HOM05D000084 ORTHO05D002966 1.6e-16 90.1 149 44.3
Glyma.20G048000 Glycine max HOM05D000084 ORTHO05D002966 2.0e-16 89.7 164 54.9
MD04G1037600 Malus domestica HOM05D000084 ORTHO05D002966 4.5e-16 88.6 158 51.9
BcaC04g19317 Brassica carinata HOM05D000084 ORTHO05D002966 5.9e-16 88.2 156 47.4
C09p67150 Brassica napus HOM05D000084 ORTHO05D002966 7.8e-16 87.8 156 46.8
Sp6g33160 Schrenkiella parvula HOM05D000084 ORTHO05D002966 7.8e-16 87.8 156 40.4
BolC9t59486H Brassica oleracea HOM05D000084 ORTHO05D002966 1.0e-15 87.4 156 46.8
Hma1.2p1_1711F.1_g298740 Hydrangea macrophylla HOM05D000084 ORTHO05D002966 1.0e-15 87.4 151 48.3
Cc01_g07380 Coffea canephora HOM05D000084 ORTHO05D002966 1.3e-15 87.0 157 43.3
Thecc.03G323000 Theobroma cacao HOM05D000084 ORTHO05D002966 3.8e-15 85.5 158 48.1
Sabra12G0018600 Salix brachista HOM05D000084 ORTHO05D002966 5.0e-15 85.1 155 49.0
Aa31LG1G16950 Aethionema arabicum HOM05D000084 ORTHO05D002966 1.5e-14 83.6 147 47.6
Carub.0006s0873 Capsella rubella HOM05D000084 ORTHO05D002966 1.5e-14 83.6 158 48.7
LjContig00564g0016380 Lotus japonicus HOM05D000084 ORTHO05D002966 2.5e-14 82.8 158 51.9
A10p27300 Brassica napus HOM05D000084 ORTHO05D002966 3.3e-14 82.4 156 46.8
BraA10t44781Z Brassica rapa HOM05D000084 ORTHO05D002966 3.3e-14 82.4 156 46.8
Sed0008748 Sechium edule HOM05D000084 ORTHO05D002966 3.3e-14 82.4 160 46.9
Manes.12G153600 Manihot esculenta HOM05D000084 ORTHO05D002966 4.3e-14 82.0 156 46.8
Prupe.6G187600 Prunus persica HOM05D000084 ORTHO05D002966 4.3e-14 82.0 153 40.5
GSVIVG01002637001 Vitis vinifera HOM05D000084 ORTHO05D002966 4.3e-14 82.0 66 63.6
Ca_04724_v3 Cicer arietinum L. HOM05D000084 ORTHO05D002966 9.5e-14 80.9 161 44.7
Lsat_1_v5_gn_0_33100 Lactuca sativa HOM05D000084 ORTHO05D002966 9.5e-14 80.9 164 42.7
Medtr3g040520 Medicago truncatula HOM05D000084 ORTHO05D002966 9.5e-14 80.9 156 47.4
TWI74G1406 Tripterygium wilfordii HOM05D000084 ORTHO05D002966 1.2e-13 80.5 154 51.9
MSTRG.12418 Avicennia marina HOM05D000084 ORTHO05D002966 1.6e-13 80.1 157 49.0
Duzib205G0192 Durio zibethinus HOM05D000084 ORTHO05D002966 2.1e-13 79.7 175 45.1
Phvul.006G020500 Phaseolus vulgaris HOM05D000084 ORTHO05D002966 2.1e-13 79.7 163 51.5
CsaV3_3G042560 Cucumis sativus L. HOM05D000084 ORTHO05D002966 3.6e-13 79.0 157 45.9
ClCG02G024190 Citrullus lanatus HOM05D000084 ORTHO05D002966 4.7e-13 78.6 157 42.0
Prupe.1G186900 Prunus persica HOM05D000084 ORTHO05D002966 6.1e-13 78.2 158 56.3
Sed0026973 Sechium edule HOM05D000084 ORTHO05D002966 6.1e-13 78.2 160 60.6
CANSAT01G2864 Cannabis sativa HOM05D000084 ORTHO05D002966 1.4e-12 77.0 129 48.8
AT5G64960 Arabidopsis thaliana HOM05D000084 ORTHO05D002966 2.3e-12 76.3 155 47.1
TWI53G0036 Tripterygium wilfordii HOM05D000084 ORTHO05D002966 3.0e-12 75.9 154 50.0
AL6G20770 Arabidopsis lyrata HOM05D000084 ORTHO05D002966 4.0e-12 75.5 153 39.9
AL8G42460 Arabidopsis lyrata HOM05D000084 ORTHO05D002966 4.0e-12 75.5 156 47.4
AT5G10270 Arabidopsis thaliana HOM05D000084 ORTHO05D002966 5.2e-12 75.1 157 41.4
Sabra06G0018100 Salix brachista HOM05D000084 ORTHO05D002966 6.8e-12 74.7 159 50.9
DCAR_014220 Daucus carota HOM05D000084 ORTHO05D002966 1.2e-11 73.9 166 45.8
Zm00001eb215750 Zea mays HOM05D000084 ORTHO05D002966 3.4e-11 72.4 97 55.7
AUR62028402 Chenopodium quinoa HOM05D000084 ORTHO05D002966 1.3e-10 70.5 154 40.9
SGA_v2.0_scaffold79G25528 Striga asiatica HOM05D000084 ORTHO05D002966 1.3e-10 70.5 158 43.0
FvH4_1g20740 Fragaria vesca HOM05D000084 ORTHO05D002966 1.7e-10 70.1 143 39.2
A02p43590 Brassica napus HOM05D000084 ORTHO05D002966 2.9e-10 69.3 150 40.7
SGA_v2.0_scaffold54G19502 Striga asiatica HOM05D000084 ORTHO05D002966 2.9e-10 69.3 161 47.8
ClCG10G014100 Citrullus lanatus HOM05D000084 ORTHO05D002966 3.7e-10 68.9 158 50.6
MD15G1318300 Malus domestica HOM05D000084 ORTHO05D002966 3.7e-10 68.9 151 37.1
Duzib068G1001 Durio zibethinus HOM05D000084 ORTHO05D002966 4.9e-10 68.6 158 45.6
RcHm_v2.0_Chr4g0407881 Rosa chinensis HOM05D000084 ORTHO05D002966 4.9e-10 68.6 157 51.6
Lj6g0002935 Lotus japonicus HOM05D000084 ORTHO05D002966 8.3e-10 67.8 156 60.3
BcaB07g29766 Brassica carinata HOM05D000084 ORTHO05D002966 1.1e-09 67.4 150 44.7
FAN23G2188 Fragaria x ananassa HOM05D000084 ORTHO05D002966 1.1e-09 67.4 143 38.5
FAN26G0180 Fragaria x ananassa HOM05D000084 ORTHO05D002966 1.1e-09 67.4 143 38.5
RcHm_v2.0_Chr2g0113361 Rosa chinensis HOM05D000084 ORTHO05D002966 1.1e-09 67.4 141 39.0
Hund07402 Selenicereus undatus HOM05D000084 ORTHO05D002966 1.1e-09 67.4 155 58.1
Potri.006G024600 Populus trichocarpa HOM05D000084 ORTHO05D002966 1.4e-09 67.0 159 46.5
PGR119G0324 Punica granatum HOM05D000084 ORTHO05D002966 1.4e-09 67.0 165 47.9
ECA232G3278 Erigeron canadensis HOM05D000084 ORTHO05D002966 1.8e-09 66.6 70 54.3
Medtr3g040810 Medicago truncatula HOM05D000084 ORTHO05D002966 1.8e-09 66.6 162 50.0
EL10Ac8g18878 Beta vulgaris HOM05D000084 ORTHO05D002966 2.4e-09 66.2 153 44.4
FAN28G2260 Fragaria x ananassa HOM05D000084 ORTHO05D002966 2.4e-09 66.2 143 37.8
MELO3C009967.2 Cucumis melo HOM05D000084 ORTHO05D002966 4.1e-09 65.5 157 58.6
Oeu058844.1 Olea europaea HOM05D000084 ORTHO05D002966 4.1e-09 65.5 153 43.1
Psat2g073000 Pisum sativum HOM05D000084 ORTHO05D002966 4.1e-09 65.5 177 45.8
BraA02t09286Z Brassica rapa HOM05D000084 ORTHO05D002966 7.0e-09 64.7 150 42.7
FvH4_4g11370 Fragaria vesca HOM05D000084 ORTHO05D002966 9.2e-09 64.3 157 51.0
Os01g0958000 Oryza sativa ssp. japonica HOM05D000084 ORTHO05D002966 9.2e-09 64.3 105 43.8
THA.LOC104798934 Tarenaya hassleriana HOM05D000084 ORTHO05D002966 9.2e-09 64.3 136 47.1
Lj2A947T46 Lonicera japonica HOM05D000084 ORTHO05D002966 1.2e-08 63.9 109 48.6
PGR119G0247 Punica granatum HOM05D000084 ORTHO05D002966 1.2e-08 63.9 165 50.9
GSVIVG01037432001 Vitis vinifera HOM05D000084 ORTHO05D002966 1.2e-08 63.9 154 34.4
Actinidia12281 Actinidia chinensis HOM05D000084 ORTHO05D002966 1.6e-08 63.5 156 47.4
unitig_27.g25355 Utricularia gibba HOM05D000084 ORTHO05D002966 3.5e-08 62.4 100 46.0
Nn3g18501 Nelumbo nucifera HOM05D000084 ORTHO05D002966 4.6e-08 62.0 66 59.1
Ah.14g084410 Amaranthus hybridus HOM05D000084 ORTHO05D002966 5.9e-08 61.6 158 47.5
BolC1t03952H Brassica oleracea HOM05D000084 ORTHO05D002966 7.8e-08 61.2 159 35.2
arahy.Tifrunner.gnm1.ann1.07543H Arachis hypogaea HOM05D000084 ORTHO05D002966 1.3e-07 60.5 134 63.4
arahy.Tifrunner.gnm1.ann1.IJVD3H Arachis hypogaea HOM05D000084 ORTHO05D002966 1.3e-07 60.5 134 63.4
Lj2A940T49 Lonicera japonica HOM05D000084 ORTHO05D002966 1.3e-07 60.5 162 50.0
BolC2t12439H Brassica oleracea HOM05D000084 ORTHO05D002966 1.7e-07 60.1 153 45.1
FAN07G0194 Fragaria x ananassa HOM05D000084 ORTHO05D002966 1.7e-07 60.1 157 49.7
Sp2g28050 Schrenkiella parvula HOM05D000084 ORTHO05D002966 1.7e-07 60.1 170 41.2
Cpa.g.sc34.212 Carica papaya HOM05D000084 ORTHO05D002966 2.3e-07 59.7 99 44.4
AUR62039760 Chenopodium quinoa HOM05D000084 ORTHO05D002966 3.0e-07 59.3 154 46.8
Hund16291 Selenicereus undatus HOM05D000084 ORTHO05D002966 3.0e-07 59.3 154 33.8
Carub.0008s2579 Capsella rubella HOM05D000084 ORTHO05D002966 5.0e-07 58.5 163 47.2
Aa31LG3G16880 Aethionema arabicum HOM05D000084 ORTHO05D002966 6.6e-07 58.2 147 40.8
Dinv04285 Davidia involucrata HOM05D000084 ORTHO05D002966 6.6e-07 58.2 157 43.9
PSO447G0390 Papaver somniferum HOM05D000084 ORTHO05D002966 6.6e-07 58.2 100 45.0
Actinidia22480 Actinidia chinensis HOM05D000084 ORTHO05D002966 8.6e-07 57.8 152 51.3
CARHR293810 Cardamine hirsuta HOM05D000084 ORTHO05D002966 8.6e-07 57.8 167 47.3
TAR625G1469 Trochodendron aralioides HOM05D000084 ORTHO05D002966 2.5e-06 56.2 154 48.7
BcaC03g18295 Brassica carinata HOM05D000084 ORTHO05D002966 3.3e-06 55.8 151 43.0
SEGI_11471 Sequoiadendron giganteum HOM05D000084 ORTHO05D002966 3.3e-06 55.8 66 53.0
SEGI_13097 Sequoiadendron giganteum HOM05D000084 ORTHO05D002966 3.3e-06 55.8 66 53.0
C01p39970 Brassica napus HOM05D000084 ORTHO05D002966 4.3e-06 55.5 159 34.6
Atru.chr4.3079 Acer truncatum HOM05D000084 ORTHO05D002966 5.6e-06 55.1 161 48.4
Thhalv10023419m.g Eutrema salsugineum HOM05D000084 ORTHO05D002966 5.6e-06 55.1 157 35.7
EL10Ac4g10050 Beta vulgaris HOM05D000084 ORTHO05D002966 9.5e-06 54.3 153 40.5
Lalb_Chr17g0347661 Lupinus albus HOM05D000084 ORTHO05D002966 9.5e-06 54.3 157 33.8


User provided reference genes

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