Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 3.6e-169 598.2 314 100.0
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 2.5e-162 575.5 314 95.5
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 7.4e-162 573.9 314 95.5
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 8.5e-134 480.7 310 82.3
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.4e-107 393.7 405 58.5
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 5.0e-102 375.2 322 67.1
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 2.8e-100 369.4 260 76.2
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.6e-95 353.6 312 60.3
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 1.6e-92 343.6 309 59.2
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 2.3e-91 339.7 316 57.9
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 1.5e-90 337.0 309 58.6
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 1.5e-90 337.0 309 57.3
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 2.0e-87 326.6 313 56.9
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 6.6e-86 321.6 308 58.1
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 8.6e-86 321.2 293 56.3
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.5e-85 320.5 313 55.3
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.9e-85 320.1 293 56.3
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 2.5e-85 319.7 300 58.3
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 2.1e-84 316.6 313 51.4
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 2.8e-84 316.2 316 55.7
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.4e-83 313.9 309 54.4
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 1.4e-83 313.9 314 54.1
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 1.4e-83 313.9 304 54.6
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 4.0e-83 312.4 312 55.1
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 5.2e-83 312.0 230 65.7
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 4.9e-81 305.4 314 57.0
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 2.4e-80 303.1 314 54.8
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 2.4e-80 303.1 313 55.0
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.4e-80 303.1 325 58.8
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 2.7e-79 299.7 309 54.7
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 3.5e-79 299.3 309 54.4
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 4.6e-79 298.9 313 54.3
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 6.0e-79 298.5 312 51.0
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 7.8e-79 298.1 313 54.3
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.9e-77 293.5 314 52.5
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 2.5e-77 293.1 311 52.4
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 1.6e-76 290.4 307 52.8
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 2.8e-76 289.7 321 52.0
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 1.4e-75 287.3 306 51.6
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 3.4e-74 282.7 312 49.7
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 9.9e-74 281.2 320 49.1
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.7e-73 279.3 297 59.9
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 3.7e-73 279.3 394 43.4
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 4.9e-73 278.9 325 49.5
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 1.4e-72 277.3 312 49.4
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.4e-72 277.3 310 50.3
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 1.9e-72 276.9 306 52.3
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 2.4e-72 276.6 319 49.5
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 3.2e-72 276.2 308 50.0
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 1.3e-70 270.8 314 49.4
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 3.9e-70 269.2 308 51.0
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 8.6e-70 268.1 315 48.9
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 7.3e-69 265.0 310 50.3
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 8.1e-68 261.5 311 47.9
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 1.4e-67 260.8 290 52.4
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 1.8e-67 260.4 284 51.8
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 5.2e-67 258.8 318 49.4
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 6.8e-67 258.5 283 52.3
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 2.0e-66 256.9 307 49.5
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 3.4e-66 256.1 311 47.9
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 7.6e-66 255.0 313 46.6
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 1.3e-65 254.2 310 47.7
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 8.4e-65 251.5 282 50.4
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 8.4e-65 251.5 269 53.2
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 1.9e-64 250.4 276 50.4
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 4.2e-64 249.2 282 55.3
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 7.1e-64 248.4 312 45.5
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 2.1e-63 246.9 314 45.2
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 2.7e-63 246.5 313 46.0
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 6.0e-63 245.4 307 47.6
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 7.8e-63 245.0 311 45.3
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 3.9e-62 242.7 293 48.8
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 6.6e-62 241.9 233 51.9
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 7.3e-61 238.4 311 44.7
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 1.6e-60 237.3 311 45.0
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 6.2e-60 235.3 311 46.9
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 6.2e-60 235.3 311 46.9
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 6.9e-59 231.9 285 46.7
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 3.4e-58 229.6 307 41.4
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 4.4e-58 229.2 301 44.5
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 5.8e-58 228.8 306 43.8
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 2.2e-57 226.9 317 47.0
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 4.9e-57 225.7 313 43.5
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 1.1e-56 224.6 311 42.1
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.9e-56 223.8 307 40.7
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 2.4e-56 223.4 220 52.7
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 7.1e-56 221.9 248 52.8
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 7.1e-56 221.9 313 43.5
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 3.5e-55 219.5 272 46.7
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 6.0e-55 218.8 275 48.0
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 1.0e-54 218.0 272 46.0
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 2.3e-54 216.9 216 52.3
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 3.9e-54 216.1 216 52.3
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 6.6e-54 215.3 306 42.8
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 1.9e-53 213.8 319 42.6
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 9.6e-53 211.5 289 44.6
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 4.8e-52 209.1 283 48.1
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 1.1e-51 208.0 316 41.8
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 1.8e-51 207.2 317 41.6
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 5.3e-51 205.7 314 41.1
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 4.9e-49 199.1 280 43.9
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 8.4e-49 198.4 274 43.8
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 2.1e-47 193.7 254 48.0
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 1.1e-43 181.4 222 43.7
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 3.1e-43 179.9 131 63.4
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 1.0e-41 174.9 304 38.5
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 8.4e-41 171.8 307 38.8
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 1.4e-40 171.0 122 64.8
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 1.9e-37 160.6 246 42.7
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 1.9e-37 160.6 182 51.6
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 5.0e-33 146.0 250 39.6
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 5.5e-32 142.5 192 42.2
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 3.3e-29 133.3 105 58.1
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 3.3e-29 133.3 303 33.3
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 4.1e-27 126.3 205 43.9
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 2.0e-26 124.0 100 62.0
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 1.0e-25 121.7 262 30.9
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 1.3e-25 121.3 120 49.2
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 4.6e-23 112.8 310 31.6
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 4.8e-20 102.8 292 30.1
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 8.2e-20 102.1 64 76.6
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 8.2e-20 102.1 64 76.6
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 1.0e-17 95.1 92 55.4
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 6.5e-17 92.4 315 29.5
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 1.4e-11 74.7 64 56.2
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 3.8e-09 66.6 154 29.2
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 5.5e-08 62.8 140 32.1
TAR636G2555 Trochodendron aralioides HOM05D005876 ORTHO05D007326 2.7e-07 60.5 118 39.8


User provided reference genes

Program Settings