Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001413 Solanum tuberosum HOM05D003321 ORTHO05D394828 3.2e-118 429.1 341 100.0
PGSC0003DMG400018099 Solanum tuberosum HOM05D003321 ORTHO05D005161 3.8e-63 246.1 448 53.3
Solyc02g087710.3 Solanum lycopersicum HOM05D003321 ORTHO05D005161 8.5e-63 245.0 448 53.3
Sopen02g032440 Solanum pennellii HOM05D003321 ORTHO05D005161 8.5e-63 245.0 448 53.3
PGSC0003DMG400001414 Solanum tuberosum HOM05D003321 ORTHO05D005161 8.5e-63 245.0 448 53.3
CAN.G206.123 Capsicum annuum HOM05D003321 ORTHO05D005161 3.2e-62 243.0 447 53.0
Nitab4.5_0003314g0110 Nicotiana tabacum HOM05D003321 ORTHO05D005161 9.1e-57 224.9 446 51.8
Peaxi162Scf00129g00539 Petunia axillaris HOM05D003321 ORTHO05D005161 9.1e-57 224.9 409 45.2
Nitab4.5_0009739g0020 Nicotiana tabacum HOM05D003321 ORTHO05D005161 2.7e-56 223.4 460 50.7
Manes.15G172400 Manihot esculenta HOM05D003321 ORTHO05D005161 5.0e-47 192.6 285 44.6
Manes.15G176600 Manihot esculenta HOM05D003321 ORTHO05D005161 5.0e-47 192.6 285 44.6
CDE05G0865 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 1.1e-46 191.4 263 47.5
CiPaw.03G029600 Carya illinoinensis HOM05D003321 ORTHO05D005161 1.9e-46 190.7 285 45.6
Haze_14579 Corylus avellana HOM05D003321 ORTHO05D005161 1.9e-46 190.7 285 44.6
Ciclev10011266m.g Citrus clementina HOM05D003321 ORTHO05D005161 2.5e-46 190.3 285 45.3
Lju41A25T61 Lonicera japonica HOM05D003321 ORTHO05D005161 2.5e-46 190.3 285 45.3
GSVIVG01011349001 Vitis vinifera HOM05D003321 ORTHO05D005161 7.2e-46 188.7 285 45.3
CiPaw.04G019600 Carya illinoinensis HOM05D003321 ORTHO05D005161 9.5e-46 188.3 285 44.6
QL02p080714 Quercus lobata HOM05D003321 ORTHO05D005161 9.5e-46 188.3 285 45.6
Nn4g23059 Nelumbo nucifera HOM05D003321 ORTHO05D005161 1.2e-45 188.0 286 44.4
Atru.chr8.1903 Acer truncatum HOM05D003321 ORTHO05D005161 1.6e-45 187.6 285 44.2
Dinv33721 Davidia involucrata HOM05D003321 ORTHO05D005161 1.6e-45 187.6 285 44.2
TAR622G1354 Trochodendron aralioides HOM05D003321 ORTHO05D005161 2.1e-45 187.2 285 44.2
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 4.7e-45 186.0 285 43.9
Medtr1g022345 Medicago truncatula HOM05D003321 ORTHO05D005161 4.7e-45 186.0 285 44.6
TPR.G20170 Trifolium pratense HOM05D003321 ORTHO05D005161 4.7e-45 186.0 286 44.4
VMungo0464G0737 Vigna mungo HOM05D003321 ORTHO05D005161 4.7e-45 186.0 285 44.2
TWI34G1126 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 6.1e-45 185.7 285 43.9
CSS0001778 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 1.0e-44 184.9 285 43.9
Glyma.03G031900 Glycine max HOM05D003321 ORTHO05D005161 1.0e-44 184.9 285 43.5
RhsimUnG0055900 Rhododendron simsii HOM05D003321 ORTHO05D005161 1.0e-44 184.9 285 43.9
HanXRQChr16g0519581 Helianthus annuus HOM05D003321 ORTHO05D005161 1.4e-44 184.5 285 43.2
ClCG10G014840 Citrullus lanatus HOM05D003321 ORTHO05D005161 1.8e-44 184.1 285 43.9
MELO3C009890.2 Cucumis melo HOM05D003321 ORTHO05D005161 1.8e-44 184.1 285 43.9
Actinidia06077 Actinidia chinensis HOM05D003321 ORTHO05D005161 2.3e-44 183.7 285 43.2
Actinidia23569 Actinidia chinensis HOM05D003321 ORTHO05D005161 2.3e-44 183.7 285 43.2
Medtr5g082570 Medicago truncatula HOM05D003321 ORTHO05D005161 2.3e-44 183.7 285 44.2
Phvul.004G026200 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 2.3e-44 183.7 285 43.9
Thecc.04G075500 Theobroma cacao HOM05D003321 ORTHO05D005161 2.3e-44 183.7 285 43.9
DCAR_011159 Daucus carota HOM05D003321 ORTHO05D005161 4.0e-44 183.0 285 43.5
Sed0022026 Sechium edule HOM05D003321 ORTHO05D005161 4.0e-44 183.0 285 43.9
COL.COLO4_25165 Corchorus olitorius HOM05D003321 ORTHO05D005161 5.2e-44 182.6 285 43.2
CsaV3_3G041690 Cucumis sativus L. HOM05D003321 ORTHO05D005161 5.2e-44 182.6 285 43.5
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 5.2e-44 182.6 285 43.2
Ca_05956_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 6.8e-44 182.2 285 44.2
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 6.8e-44 182.2 285 42.8
Hma1.2p1_0247F.1_g101800 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 6.8e-44 182.2 433 33.9
Prupe.3G271500 Prunus persica HOM05D003321 ORTHO05D005161 6.8e-44 182.2 285 43.5
TPR.G38431 Trifolium pratense HOM05D003321 ORTHO05D005161 6.8e-44 182.2 268 45.1
CANSAT64G1196 Cannabis sativa HOM05D003321 ORTHO05D005161 8.8e-44 181.8 285 43.5
Lj2g0024928 Lotus japonicus HOM05D003321 ORTHO05D005161 8.8e-44 181.8 282 44.0
Duzib264G0140 Durio zibethinus HOM05D003321 ORTHO05D005161 1.2e-43 181.4 285 43.2
unitig_899.g15507 Utricularia gibba HOM05D003321 ORTHO05D005161 1.2e-43 181.4 179 58.1
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 1.5e-43 181.0 283 42.0
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 1.5e-43 181.0 283 42.0
Ca_13366_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 1.5e-43 181.0 285 43.5
MSTRG.3218 Avicennia marina HOM05D003321 ORTHO05D005161 2.0e-43 180.6 283 44.2
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 2.0e-43 180.6 283 41.7
Eucgr.I01920 Eucalyptus grandis HOM05D003321 ORTHO05D005161 2.0e-43 180.6 284 43.0
Gohir.A11G069100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 2.0e-43 180.6 285 43.2
Gohir.D11G073100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 2.0e-43 180.6 285 43.2
Gorai.007G078500 Gossypium raimondii HOM05D003321 ORTHO05D005161 2.0e-43 180.6 285 43.2
Lj2g0002473 Lotus japonicus HOM05D003321 ORTHO05D005161 2.0e-43 180.6 285 43.2
Lsat_1_v5_gn_4_46121 Lactuca sativa HOM05D003321 ORTHO05D005161 2.6e-43 180.3 286 42.3
Nitab4.5_0000564g0350 Nicotiana tabacum HOM05D003321 ORTHO05D005161 2.6e-43 180.3 258 50.4
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 3.4e-43 179.9 283 41.7
ECA234G3709 Erigeron canadensis HOM05D003321 ORTHO05D005161 3.4e-43 179.9 285 42.5
RcHm_v2.0_Chr2g0169081 Rosa chinensis HOM05D003321 ORTHO05D005161 3.4e-43 179.9 286 43.0
TWI60G1051 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 3.4e-43 179.9 283 43.5
arahy.Tifrunner.gnm1.ann1.QM6JB0 Arachis hypogaea HOM05D003321 ORTHO05D005161 4.4e-43 179.5 286 42.7
arahy.Tifrunner.gnm1.ann1.T0AAPV Arachis hypogaea HOM05D003321 ORTHO05D005161 4.4e-43 179.5 286 42.7
Oeu037176.3 Olea europaea HOM05D003321 ORTHO05D005161 5.7e-43 179.1 285 42.1
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 5.7e-43 179.1 284 43.3
EL10Ac5g10521 Beta vulgaris HOM05D003321 ORTHO05D005161 7.5e-43 178.7 177 58.8
Lalb_Chr06g0175461 Lupinus albus HOM05D003321 ORTHO05D005161 7.5e-43 178.7 285 43.5
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 7.5e-43 178.7 284 43.7
Lsat_1_v5_gn_2_88641 Lactuca sativa HOM05D003321 ORTHO05D005161 9.8e-43 178.3 286 42.7
Lalb_Chr02g0159551 Lupinus albus HOM05D003321 ORTHO05D005161 9.8e-43 178.3 285 43.5
SalBow1G0468 Salvia bowleyana HOM05D003321 ORTHO05D005161 1.7e-42 177.6 289 42.6
Ah.11g050340 Amaranthus hybridus HOM05D003321 ORTHO05D005161 2.2e-42 177.2 177 57.6
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 2.2e-42 177.2 283 41.3
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 2.2e-42 177.2 283 41.3
MD17G1047600 Malus domestica HOM05D003321 ORTHO05D005161 2.2e-42 177.2 286 43.4
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 2.8e-42 176.8 173 58.4
PSO591G0346 Papaver somniferum HOM05D003321 ORTHO05D005161 4.9e-42 176.0 175 57.7
PSO832G3448 Papaver somniferum HOM05D003321 ORTHO05D005161 4.9e-42 176.0 175 57.7
AUR62032308 Chenopodium quinoa HOM05D003321 ORTHO05D005161 6.3e-42 175.6 177 57.1
SGA_v2.0_scaffold205G41764 Striga asiatica HOM05D003321 ORTHO05D005161 6.3e-42 175.6 179 56.4
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 8.3e-42 175.3 286 42.0
VMungo1127G1679 Vigna mungo HOM05D003321 ORTHO05D005161 8.3e-42 175.3 285 42.5
ATR1120G139 Amborella trichopoda HOM05D003321 ORTHO05D005161 1.1e-41 174.9 179 55.9
AUR62011989 Chenopodium quinoa HOM05D003321 ORTHO05D005161 1.1e-41 174.9 177 56.5
Migut.H00892 Erythranthe guttata HOM05D003321 ORTHO05D005161 1.1e-41 174.9 179 56.4
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 1.1e-41 174.9 308 40.3
Sabra17G0069700 Salix brachista HOM05D003321 ORTHO05D005161 1.1e-41 174.9 281 43.1
Aqoxy3G03281 Aquilegia oxysepala HOM05D003321 ORTHO05D005161 1.4e-41 174.5 175 56.6
Lj7A400T32 Lonicera japonica HOM05D003321 ORTHO05D005161 1.4e-41 174.5 286 42.3
Phvul.011G212400 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 2.4e-41 173.7 285 42.1
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 3.1e-41 173.3 285 41.1
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 3.1e-41 173.3 175 56.0
Migut.K01331 Erythranthe guttata HOM05D003321 ORTHO05D005161 4.1e-41 172.9 178 55.6
FAN02G3930 Fragaria x ananassa HOM05D003321 ORTHO05D005161 4.1e-41 172.9 178 56.2
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 4.1e-41 172.9 285 42.5
Hund09520 Selenicereus undatus HOM05D003321 ORTHO05D005161 4.1e-41 172.9 174 58.6
Sc17g0001240 Simmondsia chinensis HOM05D003321 ORTHO05D005161 4.1e-41 172.9 285 42.5
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 5.4e-41 172.6 285 40.7
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 7.0e-41 172.2 285 41.1
FAN14G0823 Fragaria x ananassa HOM05D003321 ORTHO05D005161 7.0e-41 172.2 178 55.6
MD09G1047500 Malus domestica HOM05D003321 ORTHO05D005161 7.0e-41 172.2 286 43.0
Potri.017G078500 Populus trichocarpa HOM05D003321 ORTHO05D005161 7.0e-41 172.2 281 42.0
Potri.004G124000 Populus trichocarpa HOM05D003321 ORTHO05D005161 9.2e-41 171.8 281 42.3
FvH4_6g49210 Fragaria vesca HOM05D003321 ORTHO05D005161 1.2e-40 171.4 178 55.6
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 1.6e-40 171.0 285 41.1
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 1.6e-40 171.0 285 40.7
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 1.6e-40 171.0 285 40.7
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 1.6e-40 171.0 285 40.7
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 1.6e-40 171.0 285 40.7
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 1.6e-40 171.0 177 56.5
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 2.0e-40 170.6 269 41.6
Os01g0184900 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 2.0e-40 170.6 274 42.3
FAN09G2305 Fragaria x ananassa HOM05D003321 ORTHO05D005161 3.5e-40 169.9 178 55.6
FAN05G4145 Fragaria x ananassa HOM05D003321 ORTHO05D005161 4.5e-40 169.5 175 56.0
Zm00001eb337810 Zea mays HOM05D003321 ORTHO05D005161 7.8e-40 168.7 161 59.0
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 2.9e-39 166.8 175 54.3
SEGI_27754 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 2.9e-39 166.8 175 54.9
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 6.6e-39 165.6 175 53.7
FAN09G2289 Fragaria x ananassa HOM05D003321 ORTHO05D005161 8.6e-39 165.2 176 54.5
FAN14G5472 Fragaria x ananassa HOM05D003321 ORTHO05D005161 8.6e-39 165.2 176 54.5
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 1.1e-38 164.9 285 40.0
SEGI_13423 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 1.9e-38 164.1 177 54.8
Os05g0182600 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 4.3e-38 162.9 161 56.5
PSO384G3545 Papaver somniferum HOM05D003321 ORTHO05D005161 7.3e-38 162.2 176 54.0
MBI17_g17503_MAGBIO Magnolia biondii HOM05D003321 ORTHO05D005161 9.5e-38 161.8 176 54.0
HPP92_017969 Vanilla planifolia HOM05D003321 ORTHO05D005161 1.6e-37 161.0 288 41.3
Pp3c9_4400 Physcomitrium patens HOM05D003321 ORTHO05D005161 1.2e-35 154.8 179 50.3
Mapoly0030s0009 Marchantia polymorpha HOM05D003321 ORTHO05D005161 2.6e-35 153.7 164 53.0
ECA238G2291 Erigeron canadensis HOM05D003321 ORTHO05D005161 4.4e-35 152.9 286 38.8
Thhalv10008631m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 4.4e-35 152.9 173 50.9
Rhsim05G0106500 Rhododendron simsii HOM05D003321 ORTHO05D005161 4.4e-35 152.9 214 44.9
Zm00001eb282920 Zea mays HOM05D003321 ORTHO05D005161 7.5e-35 152.1 161 53.4
Lj1g0009615 Lotus japonicus HOM05D003321 ORTHO05D005161 2.2e-34 150.6 164 54.9
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 1.8e-33 147.5 179 49.7
SGA_v2.0_scaffold205G41773 Striga asiatica HOM05D003321 ORTHO05D005161 1.8e-33 147.5 164 53.0
vmacro05729 Vaccinium macrocarpon HOM05D003321 ORTHO05D005161 7.0e-33 145.6 284 38.7
AagrBONN_evm.TU.Sc2ySwM_362.1279 Anthoceros agrestis HOM05D003321 ORTHO05D005161 8.6e-31 138.7 179 48.6
Oeu033336.1 Olea europaea HOM05D003321 ORTHO05D005161 1.2e-29 134.8 204 44.6
Glyma.13G064800 Glycine max HOM05D003321 ORTHO05D005161 2.8e-29 133.7 255 39.6
SMO356G0125 Selaginella moellendorffii HOM05D003321 ORTHO05D005161 1.3e-26 124.8 177 46.3
Cc07_g03060 Coffea canephora HOM05D003321 ORTHO05D005161 1.4e-25 121.3 128 57.8
Sopen02g032430 Solanum pennellii HOM05D003321 ORTHO05D051122 9.5e-22 108.6 86 70.9
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 2.6e-19 100.5 174 42.0
Lsat_1_v5_gn_5_101681 Lactuca sativa HOM05D003321 ORTHO05D000541 5.8e-19 99.4 104 53.8
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 2.9e-18 97.1 189 36.5
Aqoxy3G00239 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 1.4e-17 94.7 156 41.0
HanXRQChr04g0102631 Helianthus annuus HOM05D003321 ORTHO05D019677 5.4e-17 92.8 109 45.9
Cre01.g029450 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D005161 9.2e-17 92.0 192 32.3
TAR371G0510 Trochodendron aralioides HOM05D003321 ORTHO05D414592 2.1e-16 90.9 137 43.1
Aqoxy3G03302 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 3.5e-16 90.1 106 46.2
HanXRQChr06g0173771 Helianthus annuus HOM05D003321 ORTHO05D019677 1.0e-15 88.6 88 51.1
PRCOL_00006095 Prasinoderma coloniale HOM05D003321 ORTHO05D005161 3.9e-15 86.7 165 32.1
Cfa007905 Carpinus fangiana HOM05D003321 ORTHO05D005161 1.1e-14 85.1 60 76.7
HanXRQChr01g0022931 Helianthus annuus HOM05D003321 ORTHO05D019677 1.2e-13 81.6 79 49.4
CDE05G3094 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 1.1e-12 78.6 193 33.7
HanXRQChr11g0334501 Helianthus annuus HOM05D003321 ORTHO05D019677 1.4e-12 78.2 70 52.9
HanXRQChr15g0486151 Helianthus annuus HOM05D003321 ORTHO05D019677 1.4e-12 78.2 70 52.9
Solyc02g087680.1 Solanum lycopersicum HOM05D003321 ORTHO05D051122 8.9e-12 75.5 43 81.4
MCO12G387 Micromonas commoda HOM05D003321 ORTHO05D005161 1.1e-09 68.6 161 28.6
Hma1.2p1_0105F.1_g050590 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 1.9e-09 67.8 85 47.1
Cc07_g03050 Coffea canephora HOM05D003321 ORTHO05D005161 7.1e-09 65.9 148 33.8
Cfa021690 Carpinus fangiana HOM05D003321 ORTHO05D005161 1.1e-06 58.5 171 27.5


User provided reference genes

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