Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 0.0e+00 1945.2 980 100.0
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 0.0e+00 1757.3 982 90.8
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 0.0e+00 1440.6 1022 74.9
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 0.0e+00 1398.3 1018 72.9
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 0.0e+00 1144.4 1029 63.3
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 0.0e+00 1103.2 622 89.7
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.9e-299 1030.8 1014 59.1
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.6e-162 576.2 1082 38.1
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 6.0e-162 575.9 1089 38.4
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 2.3e-161 573.9 1027 38.9
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 3.9e-153 546.6 1058 38.6
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.9e-153 546.6 1158 35.1
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 3.7e-143 513.5 1099 34.3
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.1e-142 511.9 1069 35.5
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.8e-142 511.1 1143 33.9
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 1.7e-140 504.6 1043 35.5
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 5.0e-140 503.1 1091 35.3
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 9.4e-139 498.8 1071 34.0
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 4.7e-138 496.5 1084 34.2
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 3.9e-137 493.4 1111 34.0
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 3.3e-136 490.3 1060 35.9
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 3.3e-136 490.3 1068 34.8
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 6.3e-135 486.1 1123 33.7
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.5e-133 480.3 1052 33.4
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.0e-132 478.8 1047 34.7
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.9e-132 477.2 1022 34.2
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.1e-131 475.3 1064 33.3
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 2.3e-129 467.6 1052 34.4
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 2.2e-127 461.1 1096 32.8
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 4.8e-127 459.9 1068 34.2
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 9.1e-126 455.7 1062 34.5
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 4.5e-125 453.4 1029 35.3
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.3e-124 451.8 1055 33.5
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.7e-124 451.4 553 51.4
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 5.0e-124 449.9 1022 33.3
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 2.3e-121 441.0 1004 33.9
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 3.0e-121 440.7 1035 33.1
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.2e-120 438.7 1099 32.5
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 2.6e-120 437.6 1096 31.6
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.3e-119 435.3 1084 33.2
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 2.8e-119 434.1 1058 33.1
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.7e-119 433.7 1083 33.3
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.2e-117 428.7 1038 34.8
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 7.7e-117 426.0 1041 34.4
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.0e-116 425.6 1067 33.6
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.0e-116 425.6 1141 31.8
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.3e-116 425.2 1150 31.3
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.1e-115 422.2 1077 32.8
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.1e-114 417.9 1139 31.6
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.2e-112 412.1 1024 31.8
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.4e-112 410.6 1085 32.8
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.3e-111 408.7 1022 31.6
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 4.1e-110 403.7 1040 32.2
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 5.4e-110 403.3 1058 31.2
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 4.5e-109 400.2 1047 31.8
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 7.8e-109 399.4 1018 33.4
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 1.7e-108 398.3 1077 30.9
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.9e-108 397.1 484 52.9
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 9.5e-107 392.5 1104 30.9
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.6e-106 391.7 1115 30.9
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 4.7e-106 390.2 977 32.9
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 1.8e-105 388.3 1130 30.1
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 3.1e-105 387.5 1061 30.7
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 4.0e-105 387.1 988 32.6
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 4.0e-105 387.1 997 33.2
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 4.9e-103 380.2 1004 32.9
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 3.5e-101 374.0 1047 30.4
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 5.0e-100 370.2 1043 30.3
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 4.3e-99 367.1 1148 31.9
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 2.8e-98 364.4 984 31.6
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 2.3e-97 361.3 1030 30.8
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 5.2e-97 360.1 836 34.6
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 6.8e-97 359.8 1070 30.4
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 1.7e-95 355.1 1053 30.4
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 7.8e-93 346.3 575 39.8
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.0e-92 345.9 955 30.8
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.7e-92 345.1 890 31.3
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 3.9e-92 344.0 1037 31.1
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 6.6e-92 343.2 984 31.4
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 4.7e-90 337.0 983 30.6
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.1e-89 335.9 985 30.4
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.2e-88 332.4 987 31.5
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 2.9e-87 327.8 1034 29.9
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 1.4e-86 325.5 1051 30.5
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 5.1e-84 317.0 691 35.6
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 2.5e-83 314.7 778 35.3
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.2e-79 301.6 752 32.7
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 3.9e-76 290.8 960 29.2
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 5.1e-76 290.4 960 29.5
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 5.6e-75 287.0 810 32.6
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 1.6e-74 285.4 809 32.4
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.6e-74 285.4 1019 28.9
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 2.1e-74 285.0 810 32.3
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 2.7e-69 268.1 686 30.8
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 4.6e-69 267.3 871 29.3
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.2e-63 248.4 995 28.1
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.0e-60 239.6 1044 25.8
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.5e-59 235.0 172 72.1
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 4.2e-54 217.6 853 28.4
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.1e-53 215.3 315 41.6
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 8.7e-52 209.9 540 31.1
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 4.3e-51 207.6 961 27.2
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.2e-48 199.5 235 49.8
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.0e-48 198.7 561 30.1
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 6.5e-47 193.7 985 26.0
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 4.6e-45 187.6 289 38.8
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 6.3e-42 177.2 160 56.9
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 2.6e-40 171.8 419 33.2
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 2.6e-40 171.8 748 25.9
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.9e-38 165.6 316 34.8
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 2.3e-36 158.7 208 44.7
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 8.2e-34 150.2 166 50.0
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.1e-33 149.8 136 58.8
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.0e-32 145.6 135 54.8
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 5.9e-32 144.1 690 23.8
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 1.0e-31 143.3 169 47.3
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 2.9e-31 141.7 168 46.4
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 3.8e-31 141.4 642 27.3
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 2.5e-30 138.7 113 58.4
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 2.1e-29 135.6 167 46.1
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 4.7e-29 134.4 714 23.9
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 7.4e-27 127.1 741 25.1
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.3e-26 126.3 680 26.2
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 4.5e-24 117.9 129 46.5
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 7.7e-24 117.1 713 25.4
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 2.9e-23 115.2 964 23.1
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 8.5e-23 113.6 726 25.6
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.6e-21 109.4 681 22.8
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 8.0e-21 107.1 746 24.1
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 3.3e-19 101.7 284 27.5
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 4.4e-19 101.3 140 39.3
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.8e-17 95.9 304 27.6
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.2e-15 89.0 295 26.1
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 3.8e-15 88.2 81 53.1
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 2.5e-14 85.5 58 65.5
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.2e-13 83.2 481 23.7
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 6.1e-13 80.9 129 41.1
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 4.4e-11 74.7 392 26.0
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 1.8e-09 69.3 265 28.3
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 1.6e-08 66.2 279 26.9
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 1.3e-07 63.2 417 24.5
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 8.5e-07 60.5 63 44.4
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 1.5e-06 59.7 63 44.4


User provided reference genes

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