Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 9.8e-181 637.5 565 100.0
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 9.3e-115 418.3 334 80.2
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 1.1e-112 411.4 335 79.7
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 2.5e-112 410.2 334 79.6
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 3.3e-112 409.8 334 79.3
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 9.6e-112 408.3 335 79.1
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 5.3e-110 402.5 334 78.1
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 1.2e-109 401.4 334 78.4
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 1.1e-107 394.8 335 77.3
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.8e-105 387.5 336 75.6
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.8e-105 387.5 336 75.6
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 5.1e-105 386.0 334 76.0
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 6.7e-105 385.6 337 76.6
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 1.9e-104 384.0 334 74.3
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 1.9e-104 384.0 335 75.8
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 2.5e-104 383.6 319 78.4
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 2.2e-103 380.6 335 74.6
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 2.8e-103 380.2 337 74.8
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 3.7e-103 379.8 334 76.0
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 8.2e-103 378.6 337 74.5
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 3.1e-102 376.7 331 74.9
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 5.3e-102 375.9 318 77.4
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 5.3e-102 375.9 306 80.4
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 1.2e-101 374.8 337 73.6
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 2.6e-101 373.6 335 74.0
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 3.4e-101 373.2 296 76.4
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 3.4e-101 373.2 295 82.4
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 5.9e-101 372.5 335 74.0
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 7.6e-101 372.1 319 76.8
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 1.0e-100 371.7 336 73.8
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 1.3e-100 371.3 334 74.0
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 1.7e-100 370.9 335 74.0
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.7e-100 370.9 304 79.3
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 1.7e-100 370.9 334 73.1
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 8.5e-100 368.6 334 72.8
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.1e-99 368.2 304 78.9
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 1.4e-99 367.9 312 78.2
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 1.9e-99 367.5 334 74.3
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 1.9e-99 367.5 295 82.0
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.9e-99 367.5 334 74.9
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 2.5e-99 367.1 303 79.5
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 3.2e-99 366.7 335 72.8
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.6e-98 364.4 334 74.6
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.1e-98 364.0 334 74.6
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 2.7e-98 363.6 335 72.8
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 2.7e-98 363.6 334 74.6
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 3.6e-98 363.2 304 78.9
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 6.1e-98 362.5 295 81.7
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 7.9e-98 362.1 336 72.6
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.0e-97 361.7 295 81.7
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 2.3e-97 360.5 303 77.9
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 3.9e-97 359.8 295 81.4
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 5.1e-97 359.4 335 71.6
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 5.1e-97 359.4 334 73.1
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 2.5e-96 357.1 303 78.2
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 2.5e-96 357.1 344 72.1
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 3.3e-96 356.7 330 73.9
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 3.3e-96 356.7 303 77.9
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 7.4e-96 355.5 304 77.3
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 7.4e-96 355.5 294 79.6
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 7.4e-96 355.5 312 76.3
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 1.3e-95 354.8 292 80.8
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 1.1e-94 351.7 335 70.4
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 1.8e-94 350.9 306 76.5
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 3.1e-94 350.1 303 77.6
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 5.3e-94 349.4 334 69.5
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.2e-93 348.2 306 75.8
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 2.0e-93 347.4 302 75.2
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 5.9e-93 345.9 299 77.3
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 5.9e-93 345.9 324 72.2
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 5.9e-93 345.9 321 72.3
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 1.3e-92 344.7 296 77.4
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 3.8e-92 343.2 337 56.4
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 8.5e-92 342.0 315 73.3
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 8.5e-92 342.0 298 74.2
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 1.1e-91 341.7 308 74.0
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 7.2e-91 339.0 295 59.7
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.6e-90 337.8 338 63.6
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 4.7e-90 336.3 324 71.6
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 4.7e-90 336.3 304 66.4
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 4.7e-90 336.3 343 67.9
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 1.5e-88 331.3 318 70.4
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 3.3e-88 330.1 304 72.4
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 5.7e-88 329.3 335 69.6
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 5.7e-88 329.3 335 69.3
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 7.4e-88 328.9 335 68.7
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 1.3e-87 328.2 305 72.1
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 5.3e-86 322.8 317 69.4
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 6.9e-86 322.4 337 69.7
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 5.0e-84 316.2 335 67.8
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 9.4e-83 312.0 317 70.3
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 6.3e-79 299.3 293 74.1
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 4.1e-78 296.6 304 69.4
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 2.1e-74 284.3 292 71.2
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 6.7e-73 279.3 291 67.7
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 4.1e-70 270.0 283 71.4
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 2.5e-67 260.8 316 50.0
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 4.4e-64 250.0 211 84.8
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 6.5e-60 236.1 184 64.7
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.3e-55 221.9 136 75.7
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 5.0e-52 209.9 155 65.2
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 2.5e-51 207.6 196 83.2
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 7.3e-51 206.1 146 66.4
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.3e-41 174.5 123 70.7
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 1.2e-40 172.2 102 83.3
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 2.4e-38 164.5 101 81.2
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 1.9e-30 138.3 261 50.6
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 1.9e-30 138.3 262 47.7
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 8.6e-28 129.4 312 34.9
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 5.6e-27 126.7 266 44.4
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 3.4e-24 117.5 82 69.5
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 7.1e-22 109.8 73 75.3
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 3.0e-20 104.4 78 66.7
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 1.6e-18 98.6 109 55.0
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 8.7e-12 76.3 94 52.1
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 2.4e-06 58.2 90 36.7
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 3.2e-06 57.8 31 90.3
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 5.4e-06 57.0 113 25.7
MBI02_g40094_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D027104 9.3e-06 56.2 31 90.3


User provided reference genes

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