Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 6.6e-99 364.0 180 100.0
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 6.6e-99 364.0 180 100.0
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 6.9e-56 221.1 179 59.8
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 4.5e-55 218.4 178 59.6
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.3e-54 216.9 177 59.3
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.8e-54 215.3 174 56.9
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.9e-53 213.0 175 58.9
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 4.2e-53 211.8 176 58.0
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 1.2e-52 210.3 174 56.3
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 1.2e-52 210.3 176 57.4
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 1.6e-52 209.9 174 57.5
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 4.7e-52 208.4 176 58.5
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.4e-51 206.8 174 57.5
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 1.8e-51 206.5 170 57.6
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.8e-51 206.5 184 53.3
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.8e-51 206.5 184 53.3
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.8e-51 206.5 174 56.9
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 5.2e-51 204.9 177 57.1
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.2e-51 204.9 177 57.1
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 6.7e-51 204.5 177 57.1
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.7e-51 204.5 177 57.1
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.8e-51 204.1 177 57.1
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.1e-50 203.8 174 56.3
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 2.0e-50 203.0 180 54.4
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 2.0e-50 203.0 183 53.0
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 2.6e-50 202.6 195 51.8
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 3.3e-50 202.2 179 54.2
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 3.3e-50 202.2 175 57.1
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 4.4e-50 201.8 195 51.3
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 9.7e-50 200.7 170 58.2
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.3e-49 200.3 177 57.1
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.3e-49 200.3 173 57.2
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 3.7e-49 198.7 175 53.7
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.1e-48 197.2 173 54.9
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.6e-47 193.4 174 55.2
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.6e-47 193.4 173 53.8
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.6e-47 193.4 174 54.0
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.6e-47 193.4 180 51.7
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 2.6e-47 192.6 172 55.2
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 3.5e-47 192.2 172 55.2
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 4.5e-47 191.8 174 54.6
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 5.9e-47 191.4 178 52.8
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 5.9e-47 191.4 174 52.3
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 5.9e-47 191.4 175 53.7
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 7.7e-47 191.0 179 52.5
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.0e-46 190.7 172 56.4
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.3e-46 190.3 172 54.7
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.3e-46 190.3 176 51.7
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 2.2e-46 189.5 195 47.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 2.2e-46 189.5 171 53.2
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.8e-46 188.7 185 51.4
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 5.0e-46 188.3 172 54.1
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 5.0e-46 188.3 171 53.2
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 6.5e-46 188.0 177 55.4
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.1e-45 187.2 172 54.1
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 1.9e-45 186.4 174 50.0
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 2.5e-45 186.0 158 57.6
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.2e-45 185.7 182 50.0
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 7.2e-45 184.5 161 54.7
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 9.4e-45 184.1 173 52.6
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 1.6e-44 183.3 209 44.5
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 2.1e-44 183.0 159 54.7
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 3.6e-44 182.2 209 44.0
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 6.1e-44 181.4 162 56.8
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.0e-44 181.0 172 55.8
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.8e-43 179.9 158 56.3
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 3.0e-43 179.1 163 54.6
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 5.2e-43 178.3 176 51.1
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.2e-42 177.2 159 56.0
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.2e-42 177.2 159 56.6
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.5e-42 176.8 159 55.3
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.5e-42 176.8 159 55.3
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.5e-42 176.8 159 55.3
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.5e-42 176.8 159 55.3
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 1.5e-42 176.8 172 54.1
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.5e-42 176.8 174 51.1
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.5e-42 176.8 135 60.0
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.6e-42 176.0 178 50.6
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.6e-42 176.0 178 50.6
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.6e-42 176.0 129 62.0
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 3.3e-42 175.6 131 60.3
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 4.4e-42 175.3 134 61.2
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 5.7e-42 174.9 165 52.7
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 5.7e-42 174.9 163 52.8
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 7.5e-42 174.5 134 59.7
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 9.7e-42 174.1 159 54.1
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 1.7e-41 173.3 159 54.7
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 1.7e-41 173.3 159 54.7
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.7e-41 173.3 180 48.9
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 2.2e-41 172.9 159 56.0
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 2.2e-41 172.9 159 56.0
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 2.2e-41 172.9 159 56.0
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 2.2e-41 172.9 112 67.0
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 2.8e-41 172.6 164 53.7
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.8e-41 172.6 180 47.2
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.7e-41 172.2 113 64.6
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 3.7e-41 172.2 182 48.9
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.3e-41 171.4 113 66.4
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 8.2e-41 171.0 120 60.8
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.1e-40 170.6 160 53.1
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 1.4e-40 170.2 180 48.9
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.4e-40 170.2 182 50.0
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.4e-40 170.2 158 51.9
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.4e-40 170.2 180 48.9
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 5.3e-40 168.3 117 61.5
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.2e-39 167.2 142 54.9
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.6e-39 166.8 164 49.4
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.0e-38 164.1 176 46.0
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 1.3e-38 163.7 176 49.4
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 2.9e-38 162.5 142 50.7
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 2.9e-38 162.5 170 47.6
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 3.8e-38 162.2 130 56.9
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 6.5e-38 161.4 160 48.8
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 6.5e-38 161.4 120 58.3
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.5e-37 160.2 168 47.6
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 2.5e-37 159.5 133 51.9
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 2.5e-37 159.5 166 48.8
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 3.2e-37 159.1 165 49.1
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 5.5e-37 158.3 145 49.7
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 7.2e-37 157.9 148 52.0
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.4e-37 157.5 120 56.7
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.2e-36 157.1 174 44.8
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.1e-36 156.4 120 55.0
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.7e-36 156.0 175 45.1
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.7e-36 156.0 127 54.3
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 2.7e-36 156.0 138 51.4
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 8.0e-36 154.5 143 49.0
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.0e-35 154.1 120 56.7
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.3e-35 152.9 120 54.2
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.0e-35 152.5 145 51.0
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.6e-34 149.4 117 55.6
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.7e-33 146.7 183 45.4
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 2.2e-33 146.4 151 47.7
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 5.4e-32 141.7 120 50.8
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.2e-31 140.6 115 52.2
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.6e-31 140.2 158 48.7
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.6e-31 140.2 114 52.6
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 6.5e-30 134.8 145 47.6
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 6.5e-30 134.8 120 50.0
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.1e-29 134.0 122 49.2
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.5e-29 133.7 120 53.3
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.5e-29 133.7 110 51.8
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.5e-29 132.9 128 51.6
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 2.3e-27 126.3 95 57.9
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.5e-26 123.6 111 48.6
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.6e-26 122.9 96 58.3
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 4.4e-26 122.1 110 54.5
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 5.7e-26 121.7 118 44.9
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 5.7e-26 121.7 123 45.5
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 1.7e-25 120.2 112 49.1
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.2e-25 119.8 93 58.1
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 4.1e-24 115.5 118 49.2
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 2.7e-23 112.8 133 42.9
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.8e-23 111.3 107 48.6
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.0e-22 110.9 134 43.3
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.0e-22 110.9 134 43.3
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.9e-22 109.4 109 49.5
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.0e-22 108.6 84 57.1
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.5e-21 107.1 120 44.2
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.2e-20 104.0 121 43.8
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 6.1e-20 101.7 73 61.6
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.8e-19 100.1 130 43.8
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.7e-17 93.6 126 38.1
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.4e-16 88.6 77 50.6
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-15 87.0 74 51.4
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 6.6e-14 81.6 65 55.4
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 8.0e-12 74.7 100 37.0
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.1e-11 74.3 113 38.1
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.7e-09 67.0 99 39.4
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.4e-08 63.9 42 64.3
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 1.2e-07 60.8 72 43.1


User provided reference genes

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