Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 6.0e-149 531.2 347 100.0
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 5.7e-115 418.3 345 79.1
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 2.8e-114 416.0 339 79.4
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 4.2e-110 402.1 341 76.8
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 7.2e-110 401.4 341 83.0
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 4.7e-109 398.7 348 79.3
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 2.0e-107 393.3 340 80.9
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 5.7e-107 391.7 351 75.5
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 2.8e-106 389.4 341 76.0
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 8.3e-106 387.9 339 79.6
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 1.8e-105 386.7 347 80.1
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 1.6e-104 383.6 359 68.0
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 4.5e-104 382.1 339 79.4
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 5.0e-103 378.6 337 78.0
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.2e-101 374.0 339 77.9
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 2.1e-101 373.2 345 79.4
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 2.8e-101 372.9 339 77.9
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 2.8e-101 372.9 345 79.1
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 1.0e-100 370.9 325 79.7
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 1.8e-100 370.2 338 77.8
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 3.0e-100 369.4 350 70.6
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 3.0e-100 369.4 338 77.8
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 5.2e-100 368.6 338 78.1
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 8.9e-100 367.9 336 77.7
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.5e-99 367.1 350 70.6
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.0e-99 366.7 350 70.3
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 9.8e-99 364.4 344 76.5
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 2.2e-98 363.2 338 78.1
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 6.3e-98 361.7 346 76.9
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 1.1e-97 360.9 344 76.7
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 7.0e-97 358.2 339 76.7
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 9.2e-97 357.8 344 75.0
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.6e-96 357.1 338 76.0
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 2.0e-96 356.7 345 75.1
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 3.5e-96 355.9 348 75.6
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 4.5e-96 355.5 348 75.9
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 1.0e-95 354.4 338 76.3
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.0e-95 354.4 338 76.6
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 2.3e-95 353.2 349 76.2
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 3.9e-95 352.4 346 72.5
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 2.5e-94 349.7 338 75.7
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 2.5e-94 349.7 344 74.7
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 3.3e-94 349.4 346 51.7
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 3.3e-94 349.4 338 76.3
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 3.3e-94 349.4 344 74.7
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 5.6e-94 348.6 338 76.0
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 3.6e-93 345.9 346 75.7
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 8.0e-93 344.7 338 75.4
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 1.8e-92 343.6 339 73.5
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 3.1e-92 342.8 340 73.2
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 4.0e-92 342.4 340 75.3
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 8.9e-92 341.3 339 74.9
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 1.2e-91 340.9 346 74.3
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 1.2e-91 340.9 342 70.8
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 2.6e-91 339.7 342 75.4
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 2.6e-91 339.7 340 75.0
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 3.4e-91 339.3 350 68.0
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 3.4e-91 339.3 343 72.0
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 5.8e-91 338.6 340 73.8
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 2.2e-90 336.7 338 74.9
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 2.9e-90 336.3 337 54.6
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 3.7e-90 335.9 340 73.2
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 4.9e-90 335.5 339 71.1
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 8.3e-90 334.7 342 73.1
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 8.3e-90 334.7 342 72.8
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 1.1e-89 334.3 345 73.9
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 1.4e-89 334.0 344 70.9
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 1.9e-89 333.6 343 70.8
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 9.2e-89 331.3 338 73.7
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 1.6e-88 330.5 344 69.2
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 1.6e-88 330.5 341 73.3
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 2.0e-88 330.1 339 74.3
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 2.7e-88 329.7 345 71.9
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 6.0e-88 328.6 343 70.0
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 6.0e-88 328.6 345 73.0
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 7.8e-88 328.2 344 72.4
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 1.3e-87 327.4 349 71.6
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 1.7e-87 327.0 342 72.5
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 6.6e-87 325.1 332 72.6
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 1.9e-86 323.6 345 71.9
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 3.3e-86 322.8 344 69.8
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 4.3e-86 322.4 345 72.2
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 4.3e-86 322.4 370 67.6
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 7.3e-86 321.6 345 72.5
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 9.5e-86 321.2 343 72.3
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 1.6e-85 320.5 341 63.9
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 8.0e-85 318.2 340 71.5
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 2.3e-84 316.6 339 69.6
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 2.6e-83 313.2 336 72.6
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 5.8e-83 312.0 355 59.4
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 7.5e-83 311.6 345 70.1
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 3.0e-79 299.7 338 61.5
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 6.6e-79 298.5 336 70.8
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 2.1e-77 293.5 340 65.3
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 2.8e-77 293.1 273 82.8
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 6.2e-77 292.0 343 68.8
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 4.6e-72 275.8 344 64.5
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 7.8e-72 275.0 280 50.0
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 7.8e-72 275.0 347 60.2
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 7.8e-72 275.0 347 60.2
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 1.0e-71 274.6 349 59.9
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 1.0e-71 274.6 352 45.5
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 1.3e-71 274.2 347 61.1
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 3.0e-71 273.1 345 67.2
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 5.1e-71 272.3 349 59.6
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 4.3e-70 269.2 478 50.8
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 3.6e-69 266.2 343 55.1
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 3.6e-69 266.2 272 79.8
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 1.4e-68 264.2 339 67.8
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 3.4e-67 259.6 378 54.0
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 4.9e-66 255.8 314 67.8
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 1.4e-65 254.2 341 66.3
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 2.1e-61 240.4 344 62.2
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 8.1e-61 238.4 270 77.0
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 2.9e-58 229.9 348 60.6
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 3.2e-57 226.5 361 53.5
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 9.6e-54 214.9 277 56.0
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 9.6e-54 214.9 346 57.5
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 9.3e-49 198.4 249 75.5
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 5.1e-47 192.6 108 78.7
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 1.3e-45 188.0 353 46.5
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 1.5e-43 181.0 249 62.7
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 2.9e-42 176.8 279 50.2
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 3.8e-42 176.4 107 71.0
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 1.1e-41 174.9 107 75.7
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 8.7e-39 165.2 289 63.7
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 8.7e-39 165.2 104 73.1
Solyc09g009410.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 3.3e-38 163.3 354 44.4
DCAR_009162 Daucus carota HOM05D004768 ORTHO05D005812 4.3e-38 162.9 109 65.1
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 2.0e-35 154.1 299 49.2
Cre08.g374400 Chlamydomonas reinhardtii HOM05D004768 ORTHO05D005812 5.8e-35 152.5 468 39.1
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 2.2e-34 150.6 343 32.1
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 8.4e-34 148.7 141 51.8
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 1.9e-33 147.5 105 69.5
Potri.001G221150 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.5e-30 137.9 73 78.1
AagrBONN_evm.TU.Sc2ySwM_344.3396 Anthoceros agrestis HOM05D004768 ORTHO05D005812 3.8e-26 123.2 154 40.9
BcaC07g37166 Brassica carinata HOM05D004768 ORTHO05D005812 4.2e-25 119.8 271 63.5
MCO12G400 Micromonas commoda HOM05D004768 ORTHO05D005812 4.5e-19 99.8 351 44.7
SHI23990 Sapria himalayana HOM05D000002 ORTHO05D000001 2.9e-18 97.1 57 71.9
CARHR114770 Cardamine hirsuta HOM05D004768 ORTHO05D005812 7.2e-17 92.4 69 62.3
Nn2g14155 Nelumbo nucifera HOM05D004768 ORTHO05D005812 2.1e-16 90.9 49 83.7
DCAR_020750 Daucus carota HOM05D004768 ORTHO05D005812 7.9e-16 89.0 99 43.4
SalBow1G7826 Salvia bowleyana HOM05D004768 ORTHO05D005812 5.1e-15 86.3 339 27.1
Aa31LG7G14190 Aethionema arabicum HOM05D004768 ORTHO05D005812 2.0e-14 84.3 102 48.0
CBR_g39931 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-13 80.5 109 41.3
SalBow3G0715 Salvia bowleyana HOM05D004768 ORTHO05D005812 8.2e-13 79.0 87 49.4
SalBow1G3573 Salvia bowleyana HOM05D004768 ORTHO05D005812 7.0e-12 75.9 78 46.2
Oeu009219.1 Olea europaea HOM05D004768 ORTHO05D005812 9.1e-12 75.5 178 55.6
BcaC01g04899 Brassica carinata HOM05D004768 ORTHO05D005812 7.7e-11 72.4 45 71.1
BolC3t15591H Brassica oleracea HOM05D000416 ORTHO05D000322 7.7e-11 72.4 45 71.1
Potri.014G136700 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.7e-10 71.2 44 77.3
PRCOL_00001375 Prasinoderma coloniale HOM05D004768 ORTHO05D005812 1.7e-10 71.2 313 35.5
Glyma.19G194908 Glycine max HOM05D004768 ORTHO05D005812 1.5e-09 68.2 35 77.1
SHI23981 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-07 61.6 226 36.7
CANSAT56G1114 Cannabis sativa HOM05D002302 ORTHO05D002728 4.0e-07 60.1 89 33.7
SGA_v2.0_scaffold214G42258 Striga asiatica HOM05D002634 ORTHO05D003100 4.0e-07 60.1 115 36.5
Migut.C00519 Erythranthe guttata HOM05D002634 ORTHO05D003100 8.8e-07 58.9 112 38.4
Solyc12g088620.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.0e-06 57.8 116 34.5
Solyc12g088570.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.6e-06 57.4 117 35.0
FAN26G3045 Fragaria x ananassa HOM05D002302 ORTHO05D002728 3.3e-06 57.0 90 32.2
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 3.3e-06 57.0 115 34.8
FvH4_1g07500 Fragaria vesca HOM05D002302 ORTHO05D002728 4.4e-06 56.6 90 32.2
FAN19G1641 Fragaria x ananassa HOM05D002302 ORTHO05D002728 4.4e-06 56.6 90 32.2
FAN23G0029 Fragaria x ananassa HOM05D002302 ORTHO05D002728 4.4e-06 56.6 90 32.2
FAN28G2043 Fragaria x ananassa HOM05D002302 ORTHO05D002728 4.4e-06 56.6 90 32.2
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 4.4e-06 56.6 120 30.8
Thhalv10025026m.g Eutrema salsugineum HOM05D002302 ORTHO05D002728 5.7e-06 56.2 89 33.7
Lalb_Chr08g0245421 Lupinus albus HOM05D002634 ORTHO05D003100 5.7e-06 56.2 106 34.9
Sopen12g030510 Solanum pennellii HOM05D002634 ORTHO05D003100 5.7e-06 56.2 118 33.9
arahy.Tifrunner.gnm1.ann1.14B96B Arachis hypogaea HOM05D004768 ORTHO05D005812 7.5e-06 55.8 43 55.8
Cfa022323 Carpinus fangiana HOM05D002568 ORTHO05D125017 7.5e-06 55.8 85 40.0
Oeu011602.1 Olea europaea HOM05D002634 ORTHO05D003100 7.5e-06 55.8 102 34.3


User provided reference genes

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