Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 2.0e-65 252.3 129 100.0
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 1.4e-55 219.5 129 86.8
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 3.9e-53 211.5 126 83.3
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.5e-52 209.5 125 83.2
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.5e-52 209.5 122 84.4
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.3e-52 208.4 122 83.6
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 4.4e-52 208.0 128 82.8
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 1.3e-51 206.5 123 82.9
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 2.8e-51 205.3 126 81.0
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 4.8e-51 204.5 122 82.8
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 6.3e-51 204.1 125 82.4
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 8.2e-51 203.8 125 80.0
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 1.1e-50 203.4 122 82.0
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 1.8e-50 202.6 124 80.6
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 7.0e-50 200.7 123 80.5
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 7.0e-50 200.7 122 79.5
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 7.0e-50 200.7 122 80.3
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 1.2e-49 199.9 125 80.8
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 1.6e-49 199.5 124 79.0
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.6e-49 198.7 123 78.0
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 3.5e-49 198.4 124 79.8
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 5.9e-49 197.6 125 80.0
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 7.7e-49 197.2 124 79.8
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 7.7e-49 197.2 122 77.9
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.0e-48 196.8 121 78.5
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 1.3e-48 196.4 127 75.6
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.7e-48 196.1 124 79.0
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 1.7e-48 196.1 122 77.0
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.2e-48 195.7 122 81.1
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 2.2e-48 195.7 124 79.0
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 2.2e-48 195.7 125 76.0
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 5.0e-48 194.5 122 76.2
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 6.5e-48 194.1 125 76.0
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 6.5e-48 194.1 122 76.2
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 8.5e-48 193.7 118 78.0
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 8.5e-48 193.7 122 76.2
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 8.5e-48 193.7 122 77.0
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 8.5e-48 193.7 124 75.8
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 8.5e-48 193.7 124 75.8
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 8.5e-48 193.7 124 75.8
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 8.5e-48 193.7 123 78.0
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.1e-47 193.4 123 77.2
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.1e-47 193.4 123 77.2
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 1.5e-47 193.0 127 72.4
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.5e-47 193.0 122 76.2
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 1.9e-47 192.6 122 75.4
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 1.9e-47 192.6 123 76.4
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 1.9e-47 192.6 122 76.2
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.9e-47 192.6 122 76.2
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 1.9e-47 192.6 123 77.2
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 2.5e-47 192.2 127 72.4
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 2.5e-47 192.2 123 76.4
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 4.2e-47 191.4 124 76.6
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 4.2e-47 191.4 124 76.6
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 5.5e-47 191.0 118 77.1
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 7.2e-47 190.7 126 73.0
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 7.2e-47 190.7 123 74.0
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.6e-46 189.5 123 75.6
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.1e-46 189.1 123 74.8
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.1e-46 189.1 123 74.8
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 2.1e-46 189.1 123 75.6
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 4.7e-46 188.0 122 76.2
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 4.7e-46 188.0 125 75.2
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 4.7e-46 188.0 127 70.9
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 4.7e-46 188.0 124 74.2
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 4.7e-46 188.0 127 69.3
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 6.1e-46 187.6 125 72.8
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 8.0e-46 187.2 125 74.4
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.0e-45 186.8 105 83.8
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 1.8e-45 186.0 114 79.8
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 2.3e-45 185.7 123 72.4
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 2.3e-45 185.7 122 73.8
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 2.3e-45 185.7 129 72.9
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.3e-45 185.7 123 73.2
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 3.0e-45 185.3 134 68.7
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 4.0e-45 184.9 122 73.8
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 5.2e-45 184.5 122 72.1
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 6.7e-45 184.1 122 76.2
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 1.2e-44 183.3 123 74.0
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 3.3e-44 181.8 120 71.7
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 4.4e-44 181.4 127 74.0
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 5.7e-44 181.0 143 67.8
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 7.5e-44 180.6 138 68.8
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 9.7e-44 180.3 121 74.4
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 9.7e-44 180.3 128 74.2
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 1.3e-43 179.9 125 73.6
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 1.7e-43 179.5 123 74.8
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 2.2e-43 179.1 125 72.0
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 2.2e-43 179.1 120 70.8
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 6.3e-43 177.6 127 70.9
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 8.2e-43 177.2 121 73.6
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 8.2e-43 177.2 120 70.0
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.1e-42 176.8 116 71.6
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 1.4e-42 176.4 117 76.9
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 1.4e-42 176.4 117 76.9
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 1.8e-42 176.0 128 69.5
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 1.8e-42 176.0 128 69.5
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 1.8e-42 176.0 128 69.5
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 1.8e-42 176.0 124 66.9
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 3.1e-42 175.3 111 77.5
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 3.1e-42 175.3 122 69.7
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 4.1e-42 174.9 128 68.8
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 4.1e-42 174.9 121 73.6
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 5.3e-42 174.5 121 69.4
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 5.3e-42 174.5 108 79.6
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 7.0e-42 174.1 121 76.0
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 9.1e-42 173.7 125 72.8
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 1.2e-41 173.3 119 73.9
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 1.6e-41 172.9 108 78.7
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 2.0e-41 172.6 120 70.8
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 2.7e-41 172.2 128 68.0
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 4.5e-41 171.4 99 80.8
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 5.9e-41 171.0 108 75.9
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 5.0e-40 167.9 97 80.4
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 1.5e-39 166.4 122 63.9
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 7.2e-39 164.1 117 72.6
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 7.2e-39 164.1 159 56.6
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 9.4e-39 163.7 164 58.5
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 9.4e-39 163.7 122 63.1
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 1.6e-38 162.9 102 74.5
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 4.7e-38 161.4 88 88.6
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 8.0e-38 160.6 156 56.4
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 8.8e-37 157.1 116 68.1
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.2e-36 156.8 162 52.5
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 1.5e-36 156.4 87 85.1
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.7e-35 152.9 93 78.5
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.7e-35 151.8 125 61.6
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.4e-34 149.8 110 62.7
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.8e-34 149.4 114 61.4
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.8e-34 149.4 105 64.8
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 5.4e-34 147.9 125 60.0
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 7.0e-34 147.5 109 60.6
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 2.7e-33 145.6 94 76.6
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 3.5e-33 145.2 125 65.6
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 7.7e-33 144.1 91 76.9
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 2.5e-31 139.0 99 63.6
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 7.2e-31 137.5 115 61.7
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 1.0e-29 133.7 91 70.3
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 6.8e-29 131.0 104 66.3
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 8.8e-29 130.6 122 56.6
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 5.7e-28 127.9 122 56.6
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 6.3e-27 124.4 77 83.1
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 6.3e-27 124.4 81 77.8
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 5.4e-26 121.3 78 76.9
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 2.0e-25 119.4 89 65.2
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 3.5e-25 118.6 69 82.6
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 4.5e-25 118.2 78 71.8
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.7e-24 116.3 63 84.1
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 2.3e-24 115.9 105 52.4
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.3e-21 105.9 95 55.8
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 1.3e-19 100.1 103 46.6
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 3.7e-19 98.6 95 49.5
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 2.0e-17 92.8 56 78.6
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 1.0e-16 90.5 122 43.4
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 3.0e-16 89.0 110 43.6
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.3e-15 85.5 70 60.0
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 4.4e-12 75.1 93 36.6
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 7.5e-12 74.3 45 73.3
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 9.2e-10 67.4 50 60.0
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 2.5e-07 59.3 94 30.9
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 2.1e-06 56.2 36 77.8


User provided reference genes

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