Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 0.0e+00 1580.8 809 100.0
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 1.1e-311 1073.2 813 70.4
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 3.2e-310 1068.1 819 70.1
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 5.5e-310 1067.4 821 70.2
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 2.1e-309 1065.4 813 69.7
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 2.0e-304 1048.9 823 69.4
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.0e-304 1048.9 817 69.8
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.6e-304 1048.5 815 69.3
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.5e-303 1043.9 816 69.4
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 5.5e-302 1040.8 822 69.2
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.6e-301 1039.3 813 69.5
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 3.3e-299 1031.6 814 67.4
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 9.7e-299 1030.0 821 69.1
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 3.7e-298 1028.1 821 68.5
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 1.0e-295 1020.0 813 67.8
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 1.0e-295 1020.0 816 67.0
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.0e-295 1020.0 827 65.8
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 6.5e-295 1017.3 829 65.9
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.4e-294 1016.1 832 67.2
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 4.2e-294 1014.6 814 65.8
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 5.5e-294 1014.2 817 67.2
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.8e-292 1009.2 819 67.9
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 2.0e-291 1005.7 820 66.6
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 7.4e-291 1003.8 817 66.1
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 7.4e-291 1003.8 814 66.7
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.7e-290 1002.7 818 67.7
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.4e-289 999.6 818 65.2
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 3.4e-288 995.0 813 66.9
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 1.0e-287 993.4 821 65.9
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 7.2e-286 987.3 839 65.1
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.3e-284 982.2 805 66.7
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 2.2e-282 975.7 829 64.1
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 6.3e-282 974.2 806 66.3
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 7.0e-281 970.7 858 63.1
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.2e-280 969.9 818 65.2
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 1.7e-279 966.1 792 67.9
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.7e-279 966.1 821 65.4
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.9e-279 965.3 853 63.8
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 8.0e-277 957.2 817 63.9
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.4e-276 956.4 820 63.9
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 4.0e-276 954.9 724 70.7
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 6.7e-276 954.1 820 63.8
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 3.3e-275 951.8 813 64.8
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 3.4e-267 925.2 817 62.5
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 7.0e-265 917.5 834 61.9
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 3.5e-264 915.2 722 69.4
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 7.7e-264 914.1 837 60.9
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.7e-263 912.9 831 61.0
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 5.0e-263 911.4 839 61.6
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 3.2e-262 908.7 826 61.5
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.2e-261 906.7 826 61.5
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 3.4e-259 898.7 816 61.4
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 4.9e-258 894.8 871 58.0
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 4.3e-254 881.7 817 60.5
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 2.2e-250 869.4 862 58.0
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 4.1e-249 865.1 827 60.9
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.0e-247 860.5 837 60.5
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.5e-246 856.7 827 60.1
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.1e-245 852.8 823 59.3
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 3.4e-243 845.5 846 57.1
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 4.4e-243 845.1 834 58.0
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 1.3e-242 843.6 874 56.6
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 9.2e-241 837.4 813 59.3
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 6.0e-240 834.7 778 59.9
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 2.3e-239 832.8 981 52.7
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 4.3e-238 828.6 910 55.4
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 3.6e-237 825.5 779 62.1
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 6.2e-237 824.7 831 56.7
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 1.4e-236 823.5 806 57.2
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 2.0e-235 819.7 816 57.2
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 4.4e-235 818.5 824 56.2
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 7.5e-235 817.8 929 53.5
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 7.3e-230 801.2 833 57.3
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 1.2e-229 800.4 919 53.3
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 2.6e-227 792.7 703 65.0
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 4.4e-227 792.0 927 52.3
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.4e-225 786.9 823 57.0
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 1.9e-222 776.5 831 56.8
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 3.3e-222 775.8 927 52.2
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 6.4e-218 761.5 907 53.1
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 8.4e-218 761.1 910 53.4
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 7.1e-217 758.1 919 52.6
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 1.6e-216 756.9 911 52.9
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 1.3e-215 753.8 817 54.7
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 6.6e-215 751.5 541 72.8
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 2.5e-214 749.6 557 71.1
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 7.3e-214 748.0 929 50.5
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 9.0e-212 741.1 820 54.3
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 4.9e-210 735.3 785 56.3
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.9e-210 735.3 818 53.2
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 7.1e-209 731.5 804 52.7
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.8e-207 726.9 817 51.0
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 2.5e-206 723.0 1055 46.2
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.4e-204 716.5 830 53.4
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 3.1e-204 716.1 818 52.9
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 2.2e-202 709.9 470 79.4
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 4.9e-202 708.8 802 52.9
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 1.1e-201 707.6 761 54.7
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.4e-201 706.4 631 63.9
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.7e-197 692.6 800 52.9
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 2.4e-196 689.9 813 51.4
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 4.0e-196 689.1 818 51.6
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 1.2e-195 687.6 842 51.9
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.4e-193 680.6 905 48.6
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 9.3e-193 677.9 919 49.0
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 3.0e-191 672.9 820 51.5
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.4e-175 620.9 416 75.7
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 5.0e-170 602.4 379 79.7
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 1.6e-168 597.4 362 81.5
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 4.7e-168 595.9 342 84.8
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 6.1e-168 595.5 1089 39.5
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.1e-166 591.3 668 53.3
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 4.8e-165 585.9 361 80.3
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 2.0e-158 563.9 804 46.3
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 3.1e-148 530.0 361 73.4
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 5.4e-148 529.3 406 66.7
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 4.5e-147 526.2 450 63.8
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 1.3e-146 524.6 608 51.0
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 1.0e-143 515.0 383 69.5
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 2.0e-142 510.8 343 72.6
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.3e-141 508.1 415 66.7
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 7.8e-139 498.8 506 54.7
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.2e-136 491.5 353 68.0
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.2e-136 491.5 674 47.6
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 1.8e-135 487.6 384 65.9
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 8.6e-130 468.8 320 74.4
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 1.5e-129 468.0 383 60.8
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 3.6e-128 463.4 298 77.5
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 8.9e-127 458.8 374 65.0
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.0e-122 445.3 429 53.6
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 8.6e-122 442.2 455 57.1
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 8.1e-120 435.6 437 53.3
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.4e-119 434.9 469 54.2
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.4e-116 424.9 277 76.9
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.0e-114 417.2 437 50.8
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 5.6e-113 412.9 728 39.0
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 4.4e-110 403.3 553 46.7
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 5.1e-106 389.8 454 48.9
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 7.6e-102 375.9 461 48.8
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.2e-101 374.4 244 81.1
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 3.8e-101 373.6 462 51.9
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 7.1e-100 369.4 446 49.6
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 3.0e-98 364.0 465 50.1
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.5e-97 361.7 610 39.7
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 7.3e-97 359.4 364 57.4
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.9e-95 352.8 351 57.5
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 1.6e-91 341.7 579 46.5
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 1.6e-91 341.7 429 48.3
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.0e-87 327.0 480 47.9
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.6e-83 313.5 188 82.4
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 1.6e-80 305.1 417 47.7
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.5e-78 298.5 411 41.1
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 6.5e-77 293.1 473 46.3
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.1e-75 288.1 271 59.0
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 4.3e-73 280.4 195 69.2
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.9e-68 265.0 181 70.7
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.8e-63 248.4 464 41.2
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 6.5e-61 240.0 314 41.1
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 1.4e-60 238.8 444 35.6
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 1.5e-57 228.8 181 66.3
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 1.8e-55 221.9 187 62.6
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.8e-55 221.9 151 74.2
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 4.1e-47 194.1 389 33.7
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.1e-44 186.0 101 90.1
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 3.6e-43 181.0 638 30.1
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 1.4e-42 179.1 148 61.5
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 1.8e-42 178.7 215 49.3
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 5.2e-34 150.6 85 82.4
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 5.4e-23 114.0 64 82.8
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 7.0e-23 113.6 65 83.1
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 1.2e-22 112.8 140 49.3
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.9e-21 108.2 186 41.4
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 8.0e-19 100.1 64 75.0
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 8.0e-19 100.1 96 56.2
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.1e-15 87.8 60 66.7
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 1.6e-11 75.9 52 69.2
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.8e-11 75.1 39 92.3
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 1.8e-10 72.4 59 62.7
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.5e-09 67.0 53 67.9
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 8.3e-08 63.5 32 84.4
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 8.3e-08 63.5 56 60.7
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 1.1e-07 63.2 82 53.7


User provided reference genes

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