Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.8e-279 965.3 491 100.0
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 1.9e-220 769.2 497 79.1
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.1e-201 706.8 508 74.2
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 9.3e-196 687.2 499 72.1
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 2.7e-195 685.6 496 72.0
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 2.3e-194 682.6 512 70.9
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 2.2e-192 676.0 499 72.1
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 8.2e-192 674.1 496 71.0
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 8.2e-192 674.1 500 70.6
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 1.8e-191 672.9 502 71.1
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 6.9e-191 671.0 512 69.3
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 2.6e-190 669.1 493 70.4
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 5.9e-190 667.9 515 69.3
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 5.9e-190 667.9 507 69.6
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 7.7e-190 667.5 491 72.3
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 7.7e-190 667.5 512 69.1
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 1.0e-189 667.2 495 71.5
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 5.0e-189 664.8 486 71.6
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.1e-188 663.7 505 68.3
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.9e-188 662.9 489 71.2
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 1.9e-188 662.9 512 68.8
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 3.2e-188 662.1 493 70.6
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 5.5e-188 661.4 448 75.2
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.6e-187 659.8 493 69.4
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.6e-187 659.8 493 70.4
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 1.0e-186 657.1 493 69.4
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 4.3e-185 651.7 486 71.6
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 5.7e-185 651.4 509 68.4
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.3e-184 650.2 546 63.4
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 3.7e-184 648.7 494 68.6
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 3.7e-184 648.7 505 69.1
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 1.8e-183 646.4 495 68.7
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 5.3e-183 644.8 493 69.4
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 2.0e-182 642.9 448 73.4
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 4.5e-182 641.7 493 70.2
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 4.5e-182 641.7 476 70.8
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 1.0e-181 640.6 510 67.5
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 2.5e-180 636.0 491 68.0
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 2.7e-179 632.5 525 65.9
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.3e-178 629.4 491 69.0
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 2.3e-178 629.4 492 67.1
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 2.3e-178 629.4 491 67.8
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 3.9e-178 628.6 509 65.8
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 6.7e-178 627.9 491 68.4
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 8.8e-178 627.5 491 68.4
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 2.0e-177 626.3 506 65.6
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 4.4e-177 625.2 491 68.6
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 5.7e-177 624.8 491 68.0
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 9.7e-177 624.0 491 68.4
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.3e-176 623.6 491 68.6
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 1.3e-176 623.6 489 67.1
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.3e-176 623.6 500 67.0
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 2.2e-176 622.9 509 66.2
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 3.7e-176 622.1 496 67.1
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 6.3e-176 621.3 398 77.6
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 6.3e-176 621.3 505 65.7
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.1e-175 620.5 498 65.1
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 7.0e-175 617.8 510 65.3
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.0e-173 614.0 471 69.2
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 1.0e-173 614.0 504 66.1
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 2.9e-173 612.5 506 65.0
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 1.1e-172 610.5 508 64.8
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.5e-172 609.4 496 66.1
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 2.5e-172 609.4 460 68.9
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 2.5e-172 609.4 473 68.7
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.2e-171 607.1 464 68.5
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 1.2e-171 607.1 474 67.9
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.6e-171 605.5 465 68.0
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 6.1e-171 604.7 438 71.2
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.4e-170 603.6 488 65.2
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 2.6e-169 599.4 494 64.8
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 1.7e-168 596.7 509 65.0
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 6.3e-168 594.7 441 68.9
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 3.1e-167 592.4 477 65.8
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 1.2e-166 590.5 411 72.7
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 1.1e-164 583.9 511 61.4
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.9e-164 583.2 500 64.0
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 3.2e-164 582.4 375 77.9
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 1.0e-162 577.4 417 70.7
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 1.6e-158 563.5 504 61.5
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 2.7e-158 562.8 508 61.2
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 4.5e-158 562.0 442 67.4
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.2e-157 559.7 555 57.1
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 2.9e-157 559.3 468 64.3
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 6.8e-154 548.1 431 66.1
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 3.1e-151 539.3 494 59.3
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 6.6e-149 531.6 497 60.6
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 8.6e-149 531.2 442 65.8
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 1.5e-148 530.4 357 73.1
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 1.5e-148 530.4 431 65.2
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.6e-147 526.9 414 66.4
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 1.3e-144 517.3 375 72.0
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 3.5e-134 482.6 403 61.3
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 1.6e-131 473.8 417 60.4
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.1e-130 471.1 450 57.1
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 1.8e-130 470.3 365 68.2
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 6.8e-130 468.4 354 65.8
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.6e-129 466.5 452 55.8
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 7.8e-126 454.9 431 58.5
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 1.2e-123 447.6 308 71.8
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 5.6e-116 422.2 340 61.5
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 6.2e-115 418.7 361 60.1
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 8.9e-114 414.8 366 61.5
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 6.2e-107 392.1 439 49.9
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 4.0e-106 389.4 407 51.8
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 3.4e-105 386.3 462 48.5
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.4e-103 380.2 450 49.6
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.6e-102 377.5 251 74.5
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.6e-102 375.9 399 51.4
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 5.6e-100 369.0 353 60.9
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.3e-99 367.9 272 70.2
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 1.1e-95 354.8 399 50.1
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 4.8e-83 312.8 333 52.6
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 2.2e-80 303.9 345 47.8
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.9e-71 274.2 277 53.4
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 1.6e-70 271.2 364 44.5
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 5.3e-66 256.1 481 36.2
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 5.5e-63 246.1 286 50.3
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 3.2e-55 220.3 530 30.9
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 2.0e-36 157.9 190 49.5
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 5.7e-36 156.4 135 63.7
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 2.0e-33 147.9 122 64.8
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 5.7e-28 129.8 129 56.6
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.8e-26 124.8 179 43.0
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 5.2e-21 106.7 135 51.9
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.9e-19 100.9 218 34.4
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 3.2e-18 97.4 109 53.2
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 9.2e-18 95.9 116 56.9
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.3e-16 91.3 198 33.8
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 5.0e-16 90.1 64 75.0
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.6e-16 89.4 88 52.3
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 2.9e-11 74.3 68 51.5
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 4.1e-10 70.5 128 39.1
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 5.4e-10 70.1 63 52.4
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 3.9e-08 63.9 268 24.3
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 1.5e-07 62.0 72 51.4


User provided reference genes

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