Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1430.2 730 100.0
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1186.4 749 81.7
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1182.9 749 81.6
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1176.8 724 83.7
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1175.6 732 82.4
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1175.2 696 85.8
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1173.7 723 83.0
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1171.4 707 83.9
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1169.8 694 85.3
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1168.3 733 81.7
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1166.4 678 85.7
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1165.6 739 82.1
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1161.7 728 82.1
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1160.6 679 85.7
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1159.4 733 81.9
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1159.1 714 82.4
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1157.5 661 87.0
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1157.5 659 87.7
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1156.0 724 82.0
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1155.6 729 80.4
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1154.8 714 82.8
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1154.4 710 83.1
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1153.3 724 81.9
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1152.9 731 80.7
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1151.3 698 82.4
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1150.6 733 80.9
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1148.7 733 80.4
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1147.9 715 81.5
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1146.3 734 79.7
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1145.6 692 82.9
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1144.8 695 82.7
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1142.5 693 83.1
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1139.8 645 87.9
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1138.6 655 86.3
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1138.6 702 81.3
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1138.6 679 83.1
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1137.9 693 82.0
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1134.4 712 81.3
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1134.0 718 80.4
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1132.9 722 79.1
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1132.5 731 81.0
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1132.1 681 84.0
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1131.3 662 84.9
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1128.6 713 80.1
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1128.2 674 84.1
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1126.3 707 79.8
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1126.3 758 77.6
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1125.5 659 84.7
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1122.1 642 86.8
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1120.5 758 77.3
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1114.4 779 75.0
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1114.4 779 75.0
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1112.1 652 85.6
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1107.0 655 84.4
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1105.9 714 79.6
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1099.7 753 75.8
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1097.0 682 81.4
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1096.6 695 80.3
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1095.5 649 82.7
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1095.1 695 80.3
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1094.3 703 79.7
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1093.6 715 78.7
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1092.4 706 80.0
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 0.0e+00 1088.9 936 64.7
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1087.8 698 79.5
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1087.0 740 76.4
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1087.0 732 77.0
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1087.0 649 81.7
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1086.6 721 77.8
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1085.9 697 79.8
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1085.9 697 79.8
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 0.0e+00 1083.9 709 78.7
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 0.0e+00 1083.6 699 79.7
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1079.7 662 80.4
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1078.9 657 82.6
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 0.0e+00 1078.5 695 79.7
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 6.0e-311 1070.5 710 78.2
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 3.2e-309 1064.7 723 77.7
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 2.7e-308 1061.6 758 73.2
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 9.0e-304 1046.6 657 80.1
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.8e-299 1032.3 756 72.8
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 4.3e-298 1027.7 785 70.7
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 5.3e-296 1020.8 662 79.9
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 3.6e-292 1008.1 658 76.0
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 5.7e-290 1000.7 638 76.6
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.4e-285 986.1 556 87.4
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 1.8e-280 969.1 651 73.9
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.0e-274 949.1 547 86.8
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 9.4e-269 930.2 562 84.5
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 4.7e-268 927.9 519 88.1
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 3.0e-267 925.2 602 75.2
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 2.6e-266 922.2 524 87.2
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 8.2e-265 917.1 559 83.7
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 3.1e-264 915.2 628 74.0
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 1.2e-263 913.3 527 86.0
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 2.7e-260 902.1 531 82.9
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 1.8e-256 889.4 640 69.7
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.0e-255 885.9 542 81.9
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 5.7e-250 867.8 604 73.5
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 2.0e-242 842.8 642 65.6
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 3.6e-236 822.0 455 89.0
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 8.9e-235 817.4 494 83.6
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 3.5e-223 778.9 612 64.7
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 6.8e-219 764.6 505 77.4
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 2.6e-194 682.9 386 85.8
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 6.0e-191 671.8 410 82.7
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 9.7e-181 637.9 414 76.1
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 5.9e-178 628.6 352 86.1
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 6.7e-174 615.1 401 76.6
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 5.0e-161 572.4 341 82.7
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.8e-148 530.0 447 64.9
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 2.7e-130 470.3 599 43.6
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 5.2e-126 456.1 631 40.6
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 3.9e-113 413.3 643 40.1
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 8.1e-111 405.6 371 61.2
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 5.4e-107 392.9 350 61.1
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 8.1e-103 379.0 483 44.1
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 1.2e-93 348.6 310 61.0
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 3.4e-93 347.1 229 77.3
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.6e-79 301.6 169 88.2
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 1.0e-73 282.3 161 84.5
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.7e-58 231.1 162 67.9
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 5.1e-57 226.9 196 59.7
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 1.2e-53 215.7 189 66.7
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 2.2e-47 194.9 114 85.1
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 8.0e-42 176.4 193 53.9
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 8.8e-41 172.9 184 49.5
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 8.8e-41 172.9 230 46.1
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 1.1e-38 166.0 143 60.8
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 5.0e-36 157.1 106 74.5
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 1.0e-33 149.4 138 60.9
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 1.5e-32 145.6 112 62.5
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 2.6e-32 144.8 83 85.5
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 5.7e-32 143.7 80 86.2
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 8.3e-31 139.8 95 68.4
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 7.7e-29 133.3 71 77.5
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 2.2e-28 131.7 97 73.2
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 7.2e-27 126.7 97 70.1
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 1.4e-25 122.5 90 71.1
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 2.8e-18 98.2 60 80.0
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 9.8e-16 89.7 47 78.7
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 2.4e-14 85.1 48 77.1
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 7.0e-14 83.6 143 37.8
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 7.8e-13 80.1 42 88.1
Cpa.g.c37459 Carica papaya HOM05D005018 ORTHO05D043556 9.2e-06 56.6 27 92.6


User provided reference genes

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