Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 0.0e+00 1273.5 932 100.0
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 1.4e-192 677.6 881 61.2
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 1.2e-178 631.3 972 53.7
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 5.5e-173 612.5 888 53.9
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 4.0e-171 606.3 875 56.2
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 4.5e-167 592.8 889 53.7
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 5.9e-167 592.4 882 57.3
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 3.3e-165 586.6 873 55.9
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 1.2e-164 584.7 906 52.9
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 1.2e-164 584.7 843 57.3
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 3.7e-161 573.2 885 55.9
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 4.1e-160 569.7 885 52.7
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 2.3e-158 563.9 796 60.6
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 1.2e-156 558.1 876 54.2
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 1.4e-155 554.7 939 52.5
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 3.1e-155 553.5 885 57.9
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 2.0e-154 550.8 893 53.5
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 1.3e-153 548.1 904 53.5
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.7e-153 547.7 872 46.7
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 8.3e-153 545.4 869 57.0
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.7e-150 537.7 817 54.3
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 3.9e-150 536.6 928 52.8
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.9e-150 536.6 891 51.5
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 1.1e-147 528.5 891 54.2
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 2.3e-147 527.3 877 49.7
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 2.3e-147 527.3 885 56.3
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 4.0e-147 526.6 866 54.2
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 6.8e-147 525.8 883 48.9
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 8.9e-147 525.4 955 50.9
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.2e-146 525.0 890 51.3
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 5.8e-146 522.7 888 51.6
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 3.7e-145 520.0 910 49.3
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.9e-145 519.6 896 53.0
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 8.3e-145 518.8 885 50.6
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 1.1e-144 518.5 964 56.4
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 1.4e-144 518.1 795 58.9
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.4e-144 518.1 793 57.5
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 5.4e-144 516.2 793 56.5
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 5.4e-144 516.2 945 46.5
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 7.1e-144 515.8 940 50.0
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 9.2e-144 515.4 812 53.0
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 6.0e-143 512.7 848 52.7
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 6.0e-143 512.7 900 52.9
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 6.0e-143 512.7 927 49.4
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 1.3e-142 511.5 963 49.2
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.3e-142 511.5 891 50.7
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.3e-142 511.5 811 53.9
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 1.5e-141 508.1 1001 47.3
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.5e-141 508.1 965 52.8
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 1.5e-141 508.1 811 53.8
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 9.5e-141 505.4 1019 49.1
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 9.5e-141 505.4 883 50.6
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.6e-140 504.6 796 53.8
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 2.1e-140 504.2 804 56.7
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 8.1e-140 502.3 917 52.2
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 6.8e-139 499.2 885 52.2
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.3e-137 495.0 804 54.2
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 4.9e-137 493.0 880 54.9
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 1.9e-136 491.1 797 55.8
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 3.5e-135 486.9 807 53.5
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 6.0e-135 486.1 837 51.3
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.0e-134 485.3 901 50.4
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 1.5e-133 481.5 950 49.3
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 3.3e-133 480.3 805 55.9
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 7.3e-133 479.2 800 53.0
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 1.6e-132 478.0 882 51.1
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 6.2e-132 476.1 935 48.6
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 6.2e-132 476.1 863 47.9
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 2.4e-131 474.2 791 55.9
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 2.4e-131 474.2 886 49.0
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 5.3e-131 473.0 883 45.9
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 9.9e-130 468.8 800 51.9
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.3e-129 468.4 792 54.5
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 1.3e-129 468.4 938 46.8
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 1.7e-129 468.0 782 53.2
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 1.1e-128 465.3 794 56.0
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.9e-128 464.5 793 52.2
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 4.2e-128 463.4 794 48.4
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 6.0e-127 459.5 815 54.0
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 3.0e-126 457.2 890 51.7
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 3.9e-126 456.8 780 54.5
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.3e-124 451.8 848 53.1
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 1.6e-124 451.4 876 48.2
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 6.2e-124 449.5 884 48.5
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 5.3e-123 446.4 854 51.5
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 6.9e-123 446.0 881 46.0
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 3.4e-122 443.7 871 40.2
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 3.8e-121 440.3 879 47.8
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 4.9e-121 439.9 847 51.1
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 6.4e-121 439.5 893 47.4
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 1.1e-120 438.7 894 47.1
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 4.2e-120 436.8 874 51.4
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 3.5e-119 433.7 882 48.6
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 6.0e-119 433.0 888 49.8
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.0e-118 432.2 891 47.1
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 9.6e-117 425.6 789 53.2
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 3.7e-116 423.7 879 47.3
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 6.2e-116 422.9 870 47.5
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 4.5e-114 416.8 825 47.5
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 4.5e-114 416.8 825 47.5
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 1.3e-113 415.2 745 46.3
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 2.2e-113 414.5 796 53.5
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 4.2e-112 410.2 798 46.6
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 4.2e-112 410.2 900 46.1
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 5.5e-112 409.8 885 47.9
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 1.3e-110 405.2 727 50.6
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 1.8e-110 404.8 856 45.8
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.1e-109 402.1 863 44.5
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.3e-109 400.6 873 47.2
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.3e-108 398.7 790 45.9
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 2.4e-107 394.4 872 50.1
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 5.3e-107 393.3 792 49.4
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.0e-94 352.4 819 47.1
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 8.5e-89 332.8 808 39.0
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 1.9e-88 331.6 871 42.9
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 9.4e-88 329.3 718 52.9
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 3.0e-86 324.3 927 40.5
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 7.0e-83 313.2 265 66.0
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 1.5e-80 305.4 850 45.6
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 4.7e-79 300.4 283 62.9
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 7.4e-77 293.1 844 41.8
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 3.5e-74 284.3 769 42.8
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.9e-72 278.5 328 52.1
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 3.6e-71 274.2 313 54.6
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 1.2e-63 249.2 290 50.7
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.6e-61 241.5 256 53.1
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.2e-55 222.6 240 55.0
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 2.8e-55 221.5 299 46.2
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.7e-55 220.7 252 52.8
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 5.4e-51 207.2 310 43.2
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 2.5e-48 198.4 851 34.5
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.7e-47 194.1 317 42.0
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 6.0e-42 177.2 267 43.8
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 1.7e-41 175.6 158 62.7
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 1.4e-38 166.0 130 63.1
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 3.9e-25 121.3 71 84.5
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 5.6e-24 117.5 169 42.0
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 1.8e-22 112.5 71 80.3
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 3.9e-17 94.7 183 40.4
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 3.3e-16 91.7 134 40.3
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 3.3e-16 91.7 133 40.6
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 5.3e-14 84.3 104 39.4
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 5.3e-14 84.3 123 45.5
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 8.4e-12 77.0 115 38.3
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 4.2e-11 74.7 73 52.1
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 4.2e-11 74.7 146 32.9
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 3.6e-07 61.6 55 60.0
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.6e-07 61.6 42 73.8
PSO339G1828 Papaver somniferum HOM05D031134 ORTHO05D301998 1.4e-06 59.7 229 30.6
PSO339G4348 Papaver somniferum HOM05D031134 ORTHO05D302392 1.4e-06 59.7 229 30.6
PSO339G5906 Papaver somniferum HOM05D031134 ORTHO05D302295 1.4e-06 59.7 229 30.6
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 2.4e-06 58.9 132 38.6


User provided reference genes

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