Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 0.0e+00 1574.7 955 100.0
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 1.0e-294 1016.9 977 66.3
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 8.2e-289 997.3 973 66.9
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 9.1e-280 967.2 969 64.8
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 1.2e-276 956.8 979 63.7
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 1.2e-276 956.8 971 65.6
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 4.0e-275 951.8 968 63.3
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 1.1e-274 950.3 980 64.2
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 4.4e-274 948.3 968 66.0
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 5.7e-274 948.0 997 63.5
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 3.1e-272 942.2 972 65.3
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 5.3e-272 941.4 1002 61.1
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 9.1e-272 940.6 970 63.5
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 2.7e-271 939.1 970 65.3
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.2e-270 936.0 954 65.9
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 8.5e-270 934.1 971 61.3
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.6e-268 929.9 963 65.1
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 2.6e-266 922.5 995 62.6
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 5.7e-266 921.4 990 59.9
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 1.3e-265 920.2 1029 59.3
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.7e-265 919.8 993 62.4
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 2.2e-265 919.5 988 59.8
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 2.2e-265 919.5 996 62.3
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 2.8e-265 919.1 963 63.7
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 1.1e-264 917.1 961 61.3
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 5.4e-264 914.8 968 64.6
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 7.0e-264 914.4 988 60.9
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 7.7e-263 911.0 1039 57.8
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 5.5e-261 904.8 992 60.0
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 1.2e-260 903.7 978 62.3
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 1.6e-260 903.3 981 61.0
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 4.7e-260 901.7 999 60.6
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 1.8e-259 899.8 997 60.5
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 8.8e-259 897.5 1020 58.8
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.2e-258 897.1 964 61.5
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 4.4e-258 895.2 1055 58.6
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 5.7e-258 894.8 964 61.0
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 9.8e-258 894.0 964 62.7
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 3.7e-257 892.1 967 62.3
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 3.7e-257 892.1 993 59.0
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 4.9e-257 891.7 991 61.6
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.6e-255 886.7 981 62.3
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.9e-254 882.5 1010 59.2
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 3.8e-254 882.1 1019 58.8
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 1.5e-253 880.2 969 58.7
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 3.3e-253 879.0 984 58.6
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 7.3e-253 877.9 1004 60.1
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 9.5e-253 877.5 960 59.9
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 9.5e-253 877.5 1022 58.6
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 1.2e-252 877.1 961 60.2
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.2e-252 877.1 1038 57.3
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 1.2e-252 877.1 995 60.0
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 2.8e-252 875.9 1000 58.3
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.4e-251 873.6 1036 56.6
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 3.0e-251 872.5 1037 55.9
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 4.0e-251 872.1 964 59.1
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 1.5e-250 870.2 971 59.0
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.5e-250 870.2 1051 56.3
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 2.0e-250 869.8 1003 57.6
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 5.7e-250 868.2 979 57.7
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 7.5e-250 867.8 1011 57.1
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 1.3e-249 867.1 973 58.7
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 4.9e-249 865.1 974 58.8
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.8e-248 863.2 1020 56.0
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 3.2e-248 862.4 977 57.9
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 7.0e-248 861.3 1004 60.6
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 9.2e-248 860.9 1021 58.0
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 1.6e-247 860.1 982 59.8
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 2.0e-247 859.8 1004 58.5
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 3.5e-247 859.0 995 58.7
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 5.9e-247 858.2 972 61.0
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 7.8e-247 857.8 1160 54.2
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 1.0e-246 857.4 734 71.1
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 4.3e-245 852.0 1016 58.1
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 2.8e-244 849.4 1009 57.0
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 8.0e-244 847.8 1043 56.7
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.0e-243 847.4 1066 55.1
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 1.8e-243 846.7 977 57.0
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 3.4e-242 842.4 970 56.8
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 1.3e-241 840.5 971 61.3
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 4.9e-241 838.6 1006 57.3
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 8.3e-241 837.8 995 58.3
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 3.2e-240 835.9 1004 56.4
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 7.0e-240 834.7 990 56.8
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 4.6e-239 832.0 1023 56.4
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 3.0e-238 829.3 1025 54.7
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 3.9e-238 828.9 962 57.3
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 1.5e-237 827.0 972 58.6
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 2.5e-237 826.2 1022 56.8
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 3.3e-237 825.9 960 56.7
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 2.3e-235 819.7 1132 50.8
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 6.8e-235 818.1 1004 56.8
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 1.5e-234 817.0 1008 56.8
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 3.4e-234 815.8 1021 55.9
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 7.1e-232 808.1 1019 54.4
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 1.6e-231 807.0 981 57.2
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 3.5e-231 805.8 1024 55.6
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 1.7e-230 803.5 969 60.0
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 2.3e-230 803.1 977 56.6
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 9.5e-229 797.7 1015 54.0
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 1.2e-228 797.3 966 58.3
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 1.6e-228 797.0 1023 54.4
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 1.4e-227 793.9 994 55.2
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 6.8e-227 791.6 1148 49.4
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 1.3e-225 787.3 1029 55.2
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 8.4e-225 784.6 1022 53.9
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 1.4e-224 783.9 995 54.2
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 3.5e-223 779.2 1012 52.8
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 6.4e-217 758.4 956 56.5
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 1.9e-216 756.9 991 54.9
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 8.7e-214 748.0 981 53.8
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.3e-212 744.2 960 54.5
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 3.4e-210 736.1 989 51.7
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 1.3e-209 734.2 978 54.0
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 3.6e-204 716.1 1046 49.9
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 7.6e-202 708.4 1041 49.0
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 1.1e-195 688.0 998 52.3
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 7.4e-181 638.6 961 50.2
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 1.4e-176 624.4 1058 44.5
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 2.0e-162 577.4 881 50.1
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 1.3e-156 558.1 481 69.6
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 8.5e-153 545.4 1006 41.8
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 6.1e-151 539.3 972 44.1
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 8.8e-142 508.8 733 52.9
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 7.5e-141 505.8 549 61.2
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.8e-134 484.6 773 47.0
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 2.4e-123 447.6 950 40.3
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 9.6e-96 355.9 389 57.6
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 2.8e-95 354.4 1002 33.7
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 2.2e-76 291.6 501 46.3
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 8.2e-55 219.9 467 39.2
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 3.8e-52 211.1 315 50.5
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 6.5e-52 210.3 201 62.2
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 3.6e-50 204.5 163 73.6
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 1.4e-49 202.6 298 48.3
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 3.5e-37 161.4 381 38.3
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 5.5e-35 154.1 295 40.7
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 5.5e-35 154.1 488 32.6
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 4.0e-33 147.9 593 28.3
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 5.2e-33 147.5 435 34.3
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 1.2e-32 146.4 376 34.8
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 1.5e-32 146.0 120 73.3
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 2.0e-32 145.6 90 90.0
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 3.4e-32 144.8 163 58.9
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 4.1e-30 137.9 88 84.1
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 2.0e-29 135.6 136 59.6
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 1.5e-27 129.4 87 80.5
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 1.9e-27 129.0 362 36.7
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 5.5e-27 127.5 117 61.5
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 1.2e-26 126.3 427 33.0
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.2e-24 119.8 102 68.6
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 8.3e-23 113.6 101 67.3
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 5.4e-22 110.9 248 39.9
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 7.0e-22 110.5 161 48.4
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 6.6e-20 104.0 76 76.3
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 2.5e-19 102.1 63 84.1
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 4.7e-18 97.8 593 29.0
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 4.0e-17 94.7 76 75.0
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 8.9e-17 93.6 97 62.9
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.2e-16 93.2 631 24.2
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 3.4e-16 91.7 354 30.5
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 4.4e-16 91.3 73 72.6
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 7.5e-16 90.5 711 23.8
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 9.8e-16 90.1 63 82.5
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 2.4e-14 85.5 60 80.0
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.7e-13 82.0 233 36.1
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 2.3e-12 79.0 181 40.3
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 3.9e-12 78.2 72 66.7
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 5.6e-11 74.3 79 59.5
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 2.3e-09 68.9 71 64.8
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 2.3e-09 68.9 196 37.8
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 6.8e-09 67.4 45 80.0
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 2.4e-06 58.9 39 74.4
EL10Ac6g13433 Beta vulgaris HOM05D000200 ORTHO05D000262 3.2e-06 58.5 46 58.7
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 7.0e-06 57.4 83 43.4
unitig_52.g17084 Utricularia gibba HOM05D003521 ORTHO05D000476 9.2e-06 57.0 35 74.3


User provided reference genes

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