Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 6.7e-174 614.0 330 100.0
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 2.3e-134 482.6 308 80.5
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 6.4e-132 474.6 324 76.5
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.1e-131 473.8 325 75.7
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 5.4e-131 471.5 306 78.8
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.1e-131 471.1 325 75.4
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.0e-130 468.0 325 74.5
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 6.6e-129 464.5 326 74.5
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.9e-128 463.0 326 73.9
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 4.3e-128 461.8 309 77.0
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 7.3e-128 461.1 309 76.1
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.2e-127 460.3 334 72.8
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.2e-127 460.3 326 73.3
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.6e-127 459.9 326 73.3
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 2.4e-126 456.1 312 75.0
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.1e-126 455.7 306 75.5
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 1.5e-125 453.4 309 76.1
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 2.0e-125 453.0 308 75.3
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 4.4e-125 451.8 310 76.5
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 5.8e-125 451.4 302 76.5
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 5.8e-125 451.4 328 72.9
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 3.8e-124 448.7 302 75.5
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 4.9e-124 448.4 308 75.3
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.1e-123 447.2 284 78.2
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.4e-123 446.0 307 75.6
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 3.2e-123 445.7 309 75.1
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.2e-123 445.3 295 75.9
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 7.1e-123 444.5 302 74.8
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 1.6e-122 443.4 308 74.7
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 6.0e-122 441.4 326 71.5
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 7.8e-122 441.0 324 72.8
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 1.0e-121 440.7 328 70.7
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.0e-121 440.7 324 71.0
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.3e-121 440.3 294 75.5
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 2.3e-121 439.5 285 77.2
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 5.1e-121 438.3 326 70.9
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.1e-120 437.2 324 72.2
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.1e-120 437.2 320 71.2
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 3.3e-120 435.6 309 73.1
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 3.3e-120 435.6 322 70.8
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 7.3e-120 434.5 335 69.3
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 9.6e-120 434.1 304 73.7
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 9.6e-120 434.1 322 70.5
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 1.3e-119 433.7 327 71.9
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.6e-119 433.3 310 72.3
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 1.6e-119 433.3 328 69.8
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 4.8e-119 431.8 308 72.4
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 4.8e-119 431.8 315 71.1
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 6.2e-119 431.4 310 70.6
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.4e-118 430.3 290 73.8
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.1e-118 429.1 308 70.1
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 4.0e-118 428.7 322 69.3
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 4.0e-118 428.7 325 69.8
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 5.3e-118 428.3 309 72.2
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 5.3e-118 428.3 287 75.6
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 1.5e-117 426.8 314 70.7
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 2.6e-117 426.0 308 71.1
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.4e-117 425.6 308 70.8
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 4.4e-117 425.2 308 70.8
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.4e-117 425.2 308 70.8
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.4e-117 425.2 308 70.8
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 4.4e-117 425.2 284 77.5
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 7.6e-117 424.5 308 71.1
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 9.9e-117 424.1 287 73.2
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 1.3e-116 423.7 294 73.8
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.2e-116 422.9 308 70.5
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 4.9e-116 421.8 308 69.2
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 8.4e-116 421.0 302 72.2
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 1.1e-115 420.6 354 66.1
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 1.4e-115 420.2 328 68.0
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 2.4e-115 419.5 328 69.2
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 4.2e-115 418.7 304 70.4
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 4.2e-115 418.7 282 73.8
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 5.4e-115 418.3 307 70.4
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 7.1e-115 417.9 303 70.6
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 2.1e-114 416.4 308 70.1
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.1e-114 416.4 365 63.0
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 2.7e-114 416.0 312 68.9
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 3.5e-114 415.6 308 69.8
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 6.0e-114 414.8 316 68.0
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 7.8e-114 414.5 324 67.0
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 1.7e-113 413.3 310 69.7
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.1e-112 410.6 309 68.9
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-112 410.6 308 69.2
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.1e-112 410.6 308 69.2
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 1.9e-112 409.8 283 72.1
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 3.3e-112 409.1 312 68.3
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 7.3e-112 407.9 308 68.8
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 1.3e-111 407.1 308 69.5
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 1.4e-110 403.7 308 68.5
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 1.4e-110 403.7 308 68.2
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.4e-110 403.7 308 68.8
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.4e-110 403.7 319 67.7
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 1.8e-110 403.3 314 68.2
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 3.1e-110 402.5 308 67.9
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 3.1e-110 402.5 308 67.9
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 5.3e-110 401.7 314 68.5
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 6.9e-110 401.4 391 59.1
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 9.0e-110 401.0 310 67.4
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.2e-109 400.6 310 65.8
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.0e-109 399.8 314 66.2
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 4.5e-109 398.7 285 68.4
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 5.8e-109 398.3 308 67.5
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 7.6e-109 397.9 309 66.3
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.7e-108 396.7 303 69.6
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 4.9e-108 395.2 308 66.9
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 4.9e-108 395.2 308 67.2
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 4.9e-108 395.2 322 65.2
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 6.4e-108 394.8 311 67.5
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 1.9e-107 393.3 308 66.9
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 2.4e-107 392.9 308 66.6
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 5.4e-107 391.7 295 66.4
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 9.3e-107 391.0 300 70.3
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.7e-106 389.4 249 77.5
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 6.0e-106 388.3 302 68.9
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.3e-105 387.1 307 66.8
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 2.3e-105 386.3 313 65.8
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 1.5e-104 383.6 329 64.4
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 2.8e-103 379.4 283 66.8
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 3.7e-103 379.0 288 65.6
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-102 377.1 325 62.5
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 1.0e-100 370.9 405 52.1
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.5e-99 366.3 384 56.2
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 4.2e-99 365.5 345 59.4
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 8.7e-97 357.8 312 63.1
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 9.0e-94 347.8 316 62.0
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 1.0e-92 344.4 311 57.9
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 7.1e-91 338.2 309 60.5
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 1.0e-89 334.3 326 59.5
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 5.0e-84 315.5 313 56.5
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-83 314.3 308 58.4
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.4e-83 313.9 285 58.2
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 1.9e-83 313.5 311 55.3
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 1.6e-82 310.5 312 56.7
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.4e-78 297.4 314 52.9
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 3.8e-76 289.3 287 55.7
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 4.7e-74 282.3 248 58.9
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 2.6e-69 266.5 271 55.4
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 1.7e-68 263.8 295 51.5
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 2.7e-66 256.5 220 65.5
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 1.8e-65 253.8 167 75.4
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 8.8e-65 251.5 256 57.8
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 6.3e-63 245.4 316 48.7
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.4e-62 243.4 171 70.2
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 5.0e-60 235.7 237 58.2
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 2.2e-55 220.3 148 70.3
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.7e-53 211.8 139 79.9
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.5e-51 205.7 192 64.6
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 1.6e-50 204.1 176 65.3
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 5.0e-44 182.6 302 40.4
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.4e-41 174.5 161 62.1
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 6.6e-36 155.6 160 58.8
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 4.7e-34 149.4 357 35.6
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 1.5e-32 144.4 138 61.6
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 7.5e-32 142.1 106 71.7
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 5.0e-28 129.4 299 34.4
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 4.1e-22 109.8 73 67.1
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.3e-20 104.0 79 62.0
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 6.6e-20 102.4 99 58.6
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 4.3e-19 99.8 69 68.1
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 5.2e-17 92.8 89 56.2
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 4.1e-14 83.2 61 70.5
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 7.3e-11 72.4 67 55.2
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 1.6e-10 71.2 52 65.4
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 4.7e-10 69.7 38 92.1
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 6.2e-10 69.3 45 66.7
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 2.0e-08 64.3 84 45.2
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 7.6e-08 62.4 105 44.8
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 9.3e-06 55.5 81 43.2


User provided reference genes

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