Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0288 Punica granatum HOM05D006285 ORTHO05D007249 2.3e-96 355.5 179 100.0
Cfa009427 Carpinus fangiana HOM05D006285 ORTHO05D007249 5.9e-39 164.9 187 51.9
CiPaw.05G103600 Carya illinoinensis HOM05D006285 ORTHO05D007249 2.9e-38 162.5 196 52.6
Haze_12478 Corylus avellana HOM05D006285 ORTHO05D007249 3.8e-38 162.2 187 51.3
Thecc.02G195800 Theobroma cacao HOM05D006285 ORTHO05D007249 3.8e-38 162.2 199 50.8
QL03p050117 Quercus lobata HOM05D006285 ORTHO05D007249 8.5e-38 161.0 197 50.3
CANSAT01G0254 Cannabis sativa HOM05D006285 ORTHO05D007249 1.4e-37 160.2 203 49.8
Gohir.D01G019500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 1.9e-37 159.8 195 50.8
Gorai.002G021800 Gossypium raimondii HOM05D006285 ORTHO05D007249 1.9e-37 159.8 195 50.8
CiPaw.06G107800 Carya illinoinensis HOM05D006285 ORTHO05D007249 4.2e-37 158.7 197 51.8
ClCG06G001800 Citrullus lanatus HOM05D006285 ORTHO05D007249 7.2e-37 157.9 187 51.9
Gohir.D02G174500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 2.7e-36 156.0 207 49.3
Gorai.005G196200 Gossypium raimondii HOM05D006285 ORTHO05D007249 3.6e-36 155.6 207 48.8
Potri.003G165000 Populus trichocarpa HOM05D006285 ORTHO05D007249 3.6e-36 155.6 198 51.0
Gohir.A03G151500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 7.9e-36 154.5 202 47.5
PGR057G0008 Punica granatum HOM05D006285 ORTHO05D007249 7.9e-36 154.5 196 49.5
PGR119G0305 Punica granatum HOM05D006285 ORTHO05D007249 7.9e-36 154.5 196 49.5
Manes.09G186200 Manihot esculenta HOM05D006285 ORTHO05D007249 1.0e-35 154.1 188 53.2
TWI18G1468 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 3.9e-35 152.1 193 47.7
Dinv19860 Davidia involucrata HOM05D006285 ORTHO05D007249 3.3e-34 149.1 204 48.0
CsaV3_6G007840 Cucumis sativus L. HOM05D006285 ORTHO05D007249 4.4e-34 148.7 187 50.3
Duzib052G0121 Durio zibethinus HOM05D006285 ORTHO05D007249 1.3e-33 147.1 195 48.2
COL.COLO4_20246 Corchorus olitorius HOM05D006285 ORTHO05D007249 1.7e-33 146.7 189 50.3
GSVIVG01000967001 Vitis vinifera HOM05D006285 ORTHO05D007249 2.8e-33 146.0 202 45.0
Duzib248G1203 Durio zibethinus HOM05D006285 ORTHO05D007249 2.0e-31 139.8 190 46.8
Sabra03G0120200 Salix brachista HOM05D006285 ORTHO05D007249 4.5e-31 138.7 216 45.4
THA.LOC104825472 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 4.5e-31 138.7 207 43.5
MELO3C022348.2 Cucumis melo HOM05D006285 ORTHO05D007249 5.9e-31 138.3 181 48.6
Prupe.1G218500 Prunus persica HOM05D006285 ORTHO05D007249 1.3e-30 137.1 220 41.4
Ciclev10032858m.g Citrus clementina HOM05D006285 ORTHO05D007249 8.5e-30 134.4 186 48.9
Peaxi162Scf00128g00175 Petunia axillaris HOM05D006285 ORTHO05D007249 3.2e-29 132.5 177 46.3
C03p06880 Brassica napus HOM05D006285 ORTHO05D007249 5.5e-29 131.7 195 42.1
BolC3t13190H Brassica oleracea HOM05D006285 ORTHO05D007249 5.5e-29 131.7 195 42.1
Actinidia30601 Actinidia chinensis HOM05D006285 ORTHO05D007249 9.4e-29 131.0 178 47.8
C02p05990 Brassica napus HOM05D006285 ORTHO05D007249 9.4e-29 131.0 196 42.9
CSS0034430 Camellia sinensis var. sinensis HOM05D006285 ORTHO05D007249 9.4e-29 131.0 210 41.4
Atru.chr11.2411 Acer truncatum HOM05D006285 ORTHO05D007249 2.1e-28 129.8 173 47.4
MSTRG.467 Avicennia marina HOM05D006285 ORTHO05D007249 3.6e-28 129.0 181 44.2
BolC2t06542H Brassica oleracea HOM05D006285 ORTHO05D007249 3.6e-28 129.0 196 42.3
Actinidia22128 Actinidia chinensis HOM05D006285 ORTHO05D007249 4.7e-28 128.6 174 46.0
AL6G23830 Arabidopsis lyrata HOM05D006285 ORTHO05D007249 4.7e-28 128.6 198 43.4
A03p05870 Brassica napus HOM05D006285 ORTHO05D007249 4.7e-28 128.6 195 41.5
BraA03t09926Z Brassica rapa HOM05D006285 ORTHO05D007249 4.7e-28 128.6 195 41.5
MD16G1127400 Malus domestica HOM05D006285 ORTHO05D007249 4.7e-28 128.6 209 43.5
TAR622G0521 Trochodendron aralioides HOM05D006285 ORTHO05D007249 4.7e-28 128.6 199 43.2
Sabra01G0044900 Salix brachista HOM05D006285 ORTHO05D007249 8.0e-28 127.9 181 49.2
Sed0027998 Sechium edule HOM05D006285 ORTHO05D007249 8.0e-28 127.9 188 45.7
Potri.001G062500 Populus trichocarpa HOM05D006285 ORTHO05D007249 1.0e-27 127.5 182 50.0
Sp6g30770 Schrenkiella parvula HOM05D006285 ORTHO05D007249 1.4e-27 127.1 196 41.8
Actinidia34008 Actinidia chinensis HOM05D006285 ORTHO05D007249 5.2e-27 125.2 207 42.0
C09p63860 Brassica napus HOM05D006285 ORTHO05D007249 5.2e-27 125.2 193 40.9
BolC9t59226H Brassica oleracea HOM05D006285 ORTHO05D007249 5.2e-27 125.2 197 40.6
MD13G1127100 Malus domestica HOM05D006285 ORTHO05D007249 5.2e-27 125.2 223 39.9
Actinidia09609 Actinidia chinensis HOM05D006285 ORTHO05D007249 6.7e-27 124.8 206 41.7
Aa31LG3G14440 Aethionema arabicum HOM05D006285 ORTHO05D007249 8.8e-27 124.4 182 43.4
BcaNung01167 Brassica carinata HOM05D006285 ORTHO05D007249 8.8e-27 124.4 187 43.9
BcaNung01870 Brassica carinata HOM05D006285 ORTHO05D007249 3.3e-26 122.5 189 42.3
BcaNung01871 Brassica carinata HOM05D006285 ORTHO05D007249 3.3e-26 122.5 189 42.3
THA.LOC104803190 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 4.4e-26 122.1 193 43.0
BcaC04g19135 Brassica carinata HOM05D006285 ORTHO05D007249 5.7e-26 121.7 196 40.8
PGSC0003DMG400006480 Solanum tuberosum HOM05D006285 ORTHO05D007249 7.4e-26 121.3 167 45.5
A02p01780 Brassica napus HOM05D006285 ORTHO05D007249 9.7e-26 120.9 189 40.2
A10p24990 Brassica napus HOM05D006285 ORTHO05D007249 9.7e-26 120.9 196 39.8
BraA10t44561Z Brassica rapa HOM05D006285 ORTHO05D007249 9.7e-26 120.9 196 39.8
BraA02t05154Z Brassica rapa HOM05D006285 ORTHO05D007249 1.7e-25 120.2 189 40.2
Thhalv10014724m.g Eutrema salsugineum HOM05D006285 ORTHO05D007249 1.7e-25 120.2 189 39.7
Aqoxy5G03206 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 6.3e-25 118.2 187 42.2
Eucgr.G01954 Eucalyptus grandis HOM05D006285 ORTHO05D007249 6.3e-25 118.2 168 44.0
Rhsim12G0098900 Rhododendron simsii HOM05D006285 ORTHO05D007249 1.1e-24 117.5 175 46.9
AT5G13220 Arabidopsis thaliana HOM05D006285 ORTHO05D007249 1.8e-24 116.7 190 41.6
Carub.0006s1139 Capsella rubella HOM05D006285 ORTHO05D007249 1.8e-24 116.7 202 38.1
CDE06G1494 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 1.2e-23 114.0 188 41.0
ATR0582G164 Amborella trichopoda HOM05D006285 ORTHO05D007249 1.6e-23 113.6 205 39.5
Oeu044502.1 Olea europaea HOM05D006285 ORTHO05D007249 1.6e-23 113.6 186 40.9
TAR374G0139 Trochodendron aralioides HOM05D006285 ORTHO05D007249 3.5e-23 112.5 192 41.1
MSTRG.8043 Avicennia marina HOM05D006285 ORTHO05D007249 1.3e-22 110.5 185 41.1
Gohir.A01G021000 Gossypium hirsutum HOM05D006285 ORTHO05D007249 2.2e-22 109.8 129 48.8
Manes.08G102800 Manihot esculenta HOM05D006285 ORTHO05D007249 4.7e-20 102.1 145 46.2
Rhsim12G0019500 Rhododendron simsii HOM05D006285 ORTHO05D007249 4.7e-20 102.1 141 48.9
PSO732G0051 Papaver somniferum HOM05D006285 ORTHO05D007249 8.0e-20 101.3 200 38.0
CsaV3_4G002460 Cucumis sativus L. HOM05D006285 ORTHO05D007249 3.0e-19 99.4 203 37.9
PSO675G2785 Papaver somniferum HOM05D006285 ORTHO05D007249 3.0e-19 99.4 204 37.3
PSO017G1512 Papaver somniferum HOM05D006285 ORTHO05D007249 5.2e-19 98.6 218 36.2
HanXRQChr06g0175041 Helianthus annuus HOM05D006285 ORTHO05D007249 6.8e-19 98.2 177 38.4
Sc04g0010480 Simmondsia chinensis HOM05D006285 ORTHO05D007249 6.8e-19 98.2 177 36.7
Cpa.g.sc207.10 Carica papaya HOM05D006285 ORTHO05D007249 8.8e-19 97.8 176 40.9
TWI36G1029 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 1.5e-18 97.1 171 39.8
EL10Ac6g13588 Beta vulgaris HOM05D006285 ORTHO05D007249 2.6e-18 96.3 194 38.1
PSO478G0022 Papaver somniferum HOM05D006285 ORTHO05D007249 1.7e-17 93.6 231 32.5
CARHR200230 Cardamine hirsuta HOM05D006285 ORTHO05D007249 1.1e-16 90.9 159 40.3
Migut.K01038 Erythranthe guttata HOM05D006285 ORTHO05D007249 1.4e-16 90.5 160 38.8
Eucgr.B03545 Eucalyptus grandis HOM05D006285 ORTHO05D007249 1.4e-16 90.5 198 36.9
FvH4_4g23000 Fragaria vesca HOM05D006285 ORTHO05D007249 1.4e-16 90.5 210 35.7
ECA233G3183 Erigeron canadensis HOM05D006285 ORTHO05D007249 2.4e-16 89.7 162 38.9
MELO3C017797.2 Cucumis melo HOM05D006285 ORTHO05D007249 5.4e-16 88.6 199 35.2
Oeu019430.1 Olea europaea HOM05D006285 ORTHO05D007249 7.0e-16 88.2 165 38.2
RcHm_v2.0_Chr4g0429271 Rosa chinensis HOM05D006285 ORTHO05D007249 1.2e-15 87.4 213 35.2
CAN.G1179.3 Capsicum annuum HOM05D006285 ORTHO05D000105 2.7e-15 86.3 84 59.5
HanXRQChr17g0540471 Helianthus annuus HOM05D006285 ORTHO05D007249 3.5e-15 85.9 186 37.6
ECA246G0706 Erigeron canadensis HOM05D006285 ORTHO05D007249 4.5e-15 85.5 216 32.4
MBI07_g36277_MAGBIO Magnolia biondii HOM05D006285 ORTHO05D007249 1.3e-14 84.0 166 38.0
Lsat_1_v5_gn_3_31461 Lactuca sativa HOM05D006285 ORTHO05D007249 1.7e-14 83.6 181 39.8
Ah.03g135710 Amaranthus hybridus HOM05D000002 ORTHO05D000047 3.8e-14 82.4 135 42.2
Nn4g22189 Nelumbo nucifera HOM05D006285 ORTHO05D007249 6.5e-14 81.6 142 42.3
CDE02G4729 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 8.5e-14 81.3 141 39.0
FAN17G1869 Fragaria x ananassa HOM05D006285 ORTHO05D007249 8.5e-14 81.3 203 35.5
HPP92_023090 Vanilla planifolia HOM05D006285 ORTHO05D007249 8.5e-14 81.3 174 33.3
Nn3g16318 Nelumbo nucifera HOM05D006285 ORTHO05D007249 3.2e-13 79.3 145 37.9
Oeu055473.1 Olea europaea HOM05D006285 ORTHO05D007249 4.2e-13 79.0 173 33.5
FAN07G2449 Fragaria x ananassa HOM05D006285 ORTHO05D007249 5.5e-13 78.6 203 35.0
Sc11g0000190 Simmondsia chinensis HOM05D006285 ORTHO05D007249 7.2e-13 78.2 143 42.7
HanXRQChr08g0210081 Helianthus annuus HOM05D006285 ORTHO05D007249 1.2e-12 77.4 157 35.7
FAN12G2625 Fragaria x ananassa HOM05D006285 ORTHO05D007249 2.1e-12 76.6 200 34.5
ECA236G0223 Erigeron canadensis HOM05D001047 ORTHO05D000768 2.3e-11 73.2 125 40.0
Os04g0395800 Oryza sativa ssp. japonica HOM05D006285 ORTHO05D007249 3.0e-11 72.8 74 51.4
Sopen01g005240 Solanum pennellii HOM05D015436 ORTHO05D018126 6.8e-11 71.6 80 47.5
SalBow2G0692 Salvia bowleyana HOM05D006285 ORTHO05D007249 8.8e-11 71.2 121 34.7
vmacro16080 Vaccinium macrocarpon HOM05D006285 ORTHO05D007249 1.2e-10 70.9 170 32.4
Zm00001eb084980 Zea mays HOM05D006285 ORTHO05D007249 5.7e-10 68.6 89 43.8
SEGI_34216 Sequoiadendron giganteum HOM05D012961 ORTHO05D000768 7.5e-10 68.2 242 25.2
SEGI_20867 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 1.3e-09 67.4 187 30.5
BcaB01g05368 Brassica carinata HOM05D006285 ORTHO05D007249 1.7e-09 67.0 110 39.1
Sopen01g005260 Solanum pennellii HOM05D015436 ORTHO05D018126 1.7e-09 67.0 76 46.1
HanXRQChr04g0125901 Helianthus annuus HOM05D001047 ORTHO05D000768 1.1e-08 64.3 89 40.4
Aqoxy3G01789 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 1.4e-08 63.9 75 50.7
Zm00001eb005990 Zea mays HOM05D001047 ORTHO05D000768 1.4e-08 63.9 78 46.2
Oeu003277.1 Olea europaea HOM05D006285 ORTHO05D007249 1.2e-07 60.8 180 31.7
RcHm_v2.0_Chr2g0146371 Rosa chinensis HOM05D001047 ORTHO05D000768 1.2e-07 60.8 91 40.7
AUR62028862 Chenopodium quinoa HOM05D006285 ORTHO05D007249 1.6e-07 60.5 92 39.1
Nitab4.5_0000343g0360 Nicotiana tabacum HOM05D001047 ORTHO05D000768 1.6e-07 60.5 111 37.8
SEGI_13039 Sequoiadendron giganteum HOM05D012961 ORTHO05D007249 2.7e-07 59.7 221 26.2
Solyc01g009740.3 Solanum lycopersicum HOM05D015436 ORTHO05D018126 3.5e-07 59.3 72 51.4
arahy.Tifrunner.gnm1.ann1.76C240 Arachis hypogaea HOM05D001047 ORTHO05D000768 4.5e-07 58.9 104 39.4
FAN02G1879 Fragaria x ananassa HOM05D001047 ORTHO05D000768 4.5e-07 58.9 116 33.6
SEGI_26161 Sequoiadendron giganteum HOM05D012961 ORTHO05D000768 4.5e-07 58.9 222 28.8
Sopen01g045960 Solanum pennellii HOM05D001047 ORTHO05D000768 4.5e-07 58.9 102 37.3
SEGI_09469 Sequoiadendron giganteum HOM05D012961 ORTHO05D000768 5.9e-07 58.5 219 27.9
FAN09G2579 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.0e-06 57.8 94 37.2
Os03g0181100 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 1.0e-06 57.8 73 43.8
HanXRQChr10g0311841 Helianthus annuus HOM05D001047 ORTHO05D000768 1.3e-06 57.4 91 44.0
Lsat_1_v5_gn_8_85820 Lactuca sativa HOM05D001047 ORTHO05D000768 1.3e-06 57.4 121 34.7
SEGI_07840 Sequoiadendron giganteum HOM05D012961 ORTHO05D007249 1.3e-06 57.4 216 26.4
FAN14G3719 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.7e-06 57.0 86 39.5
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 2.3e-06 56.6 91 40.7
DCAR_011935 Daucus carota HOM05D001047 ORTHO05D000768 2.3e-06 56.6 182 29.7
FvH4_6g35140 Fragaria vesca HOM05D001047 ORTHO05D000768 2.3e-06 56.6 91 38.5
SalBow5G2121 Salvia bowleyana HOM05D001047 ORTHO05D000768 2.3e-06 56.6 104 38.5
Gohir.A08G246300 Gossypium hirsutum HOM05D001047 ORTHO05D000768 2.9e-06 56.2 133 34.6
Sed0011504 Sechium edule HOM05D001047 ORTHO05D000768 2.9e-06 56.2 83 42.2
SEGI_19168 Sequoiadendron giganteum HOM05D001047 ORTHO05D000768 2.9e-06 56.2 113 39.8
Solyc12g049400.2 Solanum lycopersicum HOM05D001047 ORTHO05D000768 2.9e-06 56.2 91 41.8
Sopen12g023880 Solanum pennellii HOM05D001047 ORTHO05D000768 2.9e-06 56.2 91 41.8
Zm00001eb006000 Zea mays HOM05D001047 ORTHO05D000768 2.9e-06 56.2 100 39.0
ClCG07G011740 Citrullus lanatus HOM05D006285 ORTHO05D007249 3.8e-06 55.8 85 42.4
Lalb_Chr13g0299341 Lupinus albus HOM05D001047 ORTHO05D000768 3.8e-06 55.8 101 36.6
PGR044G1306 Punica granatum HOM05D001047 ORTHO05D000768 3.8e-06 55.8 147 31.3
SEGI_23736 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 3.8e-06 55.8 91 38.5
PGSC0003DMG400004367 Solanum tuberosum HOM05D001047 ORTHO05D000768 3.8e-06 55.8 106 35.8
unitig_8.g4682 Utricularia gibba HOM05D001047 ORTHO05D000768 3.8e-06 55.8 93 40.9
DCAR_028473 Daucus carota HOM05D001047 ORTHO05D000768 5.0e-06 55.5 93 38.7
PGR142G0888 Punica granatum HOM05D001047 ORTHO05D000768 5.0e-06 55.5 202 30.2
CAN.G2125.1 Capsicum annuum HOM05D001047 ORTHO05D000768 6.6e-06 55.1 110 35.5
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 6.6e-06 55.1 90 41.1
Lj4g0027094 Lotus japonicus HOM05D001047 ORTHO05D000768 6.6e-06 55.1 107 35.5
Migut.M00900 Erythranthe guttata HOM05D002924 ORTHO05D003122 8.6e-06 54.7 117 33.3
Gohir.A06G078400 Gossypium hirsutum HOM05D001047 ORTHO05D000768 8.6e-06 54.7 145 29.7
Gohir.D06G077500 Gossypium hirsutum HOM05D001047 ORTHO05D000768 8.6e-06 54.7 145 29.7
Gorai.004G285100 Gossypium raimondii HOM05D001047 ORTHO05D000768 8.6e-06 54.7 114 34.2
Gorai.010G090600 Gossypium raimondii HOM05D001047 ORTHO05D000768 8.6e-06 54.7 145 29.7


User provided reference genes

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