Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 5.6e-192 674.1 336 100.0
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 3.8e-140 501.9 336 74.7
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 2.1e-138 496.1 336 73.8
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 3.0e-137 492.3 336 73.5
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 3.2e-131 472.2 331 70.4
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 4.7e-130 468.4 336 70.8
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 1.0e-129 467.2 338 70.1
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 8.8e-129 464.2 334 69.8
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 1.1e-128 463.8 338 70.4
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 2.0e-128 463.0 359 66.0
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 3.3e-128 462.2 333 70.0
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 9.7e-128 460.7 330 69.4
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 2.2e-127 459.5 337 67.7
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 2.2e-127 459.5 336 68.2
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.8e-127 459.1 334 68.9
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 1.1e-126 457.2 336 68.2
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.4e-126 456.1 334 68.6
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 3.1e-126 455.7 336 68.2
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 4.1e-126 455.3 330 69.4
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 7.0e-126 454.5 340 67.9
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 7.0e-126 454.5 336 68.2
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 9.1e-126 454.1 337 68.0
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.6e-125 453.4 336 67.9
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 1.6e-125 453.4 336 67.6
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 2.6e-125 452.6 332 66.9
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 3.5e-125 452.2 336 67.0
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 1.0e-124 450.7 336 69.3
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 1.0e-124 450.7 333 67.0
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 2.9e-124 449.1 334 67.4
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 3.8e-124 448.7 333 69.7
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 3.8e-124 448.7 333 66.4
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 3.8e-124 448.7 334 68.0
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 6.5e-124 448.0 330 67.6
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 1.9e-123 446.4 333 69.1
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 3.2e-123 445.7 348 66.1
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 5.5e-123 444.9 335 67.2
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 5.5e-123 444.9 333 69.4
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 9.4e-123 444.1 333 66.1
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 1.6e-122 443.4 332 67.2
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.6e-122 443.4 333 67.0
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 2.1e-122 443.0 332 66.9
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 8.0e-122 441.0 335 67.8
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 1.0e-121 440.7 336 68.2
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 1.8e-121 439.9 333 66.1
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 1.8e-121 439.9 336 65.2
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 5.2e-121 438.3 336 65.8
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 8.8e-121 437.6 333 66.1
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 1.5e-120 436.8 336 64.9
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 7.5e-120 434.5 375 60.3
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 7.5e-120 434.5 333 64.6
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 3.7e-119 432.2 347 63.4
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 4.8e-119 431.8 331 64.4
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 4.8e-119 431.8 333 67.0
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.8e-118 429.9 333 65.8
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.2e-117 427.2 330 63.6
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 3.5e-117 425.6 336 64.0
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 3.8e-116 422.2 336 65.2
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 3.8e-116 422.2 335 62.1
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 6.5e-116 421.4 338 65.1
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 6.5e-116 421.4 338 65.1
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 2.5e-115 419.5 337 62.6
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 4.2e-115 418.7 331 63.1
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 5.5e-115 418.3 334 63.8
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 2.3e-113 412.9 323 67.5
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 2.0e-112 409.8 336 62.5
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 7.5e-112 407.9 336 62.8
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.8e-110 403.3 333 64.3
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 1.3e-108 397.1 342 60.2
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 2.5e-107 392.9 332 62.7
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 4.2e-107 392.1 332 62.7
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 4.2e-107 392.1 293 67.9
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 1.4e-105 387.1 336 60.1
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 4.0e-105 385.6 336 59.8
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 6.8e-105 384.8 336 59.2
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 6.8e-105 384.8 336 59.2
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 1.2e-104 384.0 336 59.5
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 2.6e-104 382.9 331 60.1
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 3.4e-104 382.5 336 58.3
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 3.7e-103 379.0 336 58.6
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 3.7e-103 379.0 339 56.9
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 1.4e-102 377.1 332 57.8
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 9.2e-102 374.4 330 58.2
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 8.6e-100 367.9 333 59.5
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 1.5e-99 367.1 336 56.0
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 1.9e-99 366.7 328 57.0
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 3.3e-99 365.9 336 56.5
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 3.3e-99 365.9 355 54.9
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 4.7e-98 362.1 331 55.0
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 4.0e-97 359.0 336 56.2
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 1.2e-96 357.5 328 56.7
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 2.0e-93 346.7 316 58.2
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 2.7e-93 346.3 336 54.8
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 3.9e-92 342.4 340 53.8
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 8.9e-89 331.3 303 61.4
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 2.1e-85 320.1 245 68.6
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.2e-82 310.8 360 46.4
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 1.4e-78 297.4 339 51.3
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 2.1e-77 293.5 245 62.0
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 1.6e-74 283.9 275 56.0
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 6.8e-73 278.5 339 47.2
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 2.6e-64 250.0 462 35.7
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 9.9e-64 248.1 313 46.0
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 2.2e-63 246.9 169 73.4
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 1.3e-55 221.1 339 38.6
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 1.3e-55 221.1 335 39.4
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 9.6e-51 204.9 190 55.3
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 9.6e-51 204.9 170 64.7
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 6.9e-49 198.7 150 64.0
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.4e-38 164.5 178 47.2
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 1.9e-38 164.1 178 53.9
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 5.5e-38 162.5 148 54.1
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 3.0e-36 156.8 147 54.4
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.9e-35 154.1 132 56.8
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 1.4e-30 137.9 151 47.7
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 3.6e-29 133.3 81 71.6
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 2.5e-22 110.5 72 76.4
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 6.7e-20 102.4 63 74.6
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 2.2e-18 97.4 132 41.7
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 3.7e-18 96.7 133 45.1
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 4.2e-14 83.2 57 59.6
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 6.1e-13 79.3 58 65.5
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 9.1e-09 65.5 78 44.9
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 1.2e-08 65.1 81 45.7
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 2.0e-08 64.3 63 55.6
Ca_29090_v3 Cicer arietinum L. HOM05D000582 ORTHO05D034183 3.2e-06 57.0 114 30.7


User provided reference genes

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