Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 0.0e+00 1095.5 585 100.0
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 3.3e-91 340.1 642 43.3
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 1.4e-84 318.2 654 41.7
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 2.0e-83 314.3 582 43.6
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 3.0e-76 290.4 636 41.7
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 2.2e-74 284.3 677 37.5
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 7.0e-73 279.3 623 41.4
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 2.0e-72 277.7 689 36.7
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 2.0e-72 277.7 609 40.9
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.7e-72 277.3 622 40.7
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 7.7e-72 275.8 641 39.5
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 1.3e-71 275.0 633 40.1
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 5.0e-71 273.1 621 38.8
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 1.1e-70 271.9 549 42.6
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 2.7e-69 267.3 468 42.3
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.6e-69 266.9 623 39.2
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 2.6e-67 260.8 565 39.5
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 2.2e-66 257.7 636 37.4
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 3.7e-66 256.9 538 40.1
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 2.4e-65 254.2 603 39.5
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 2.4e-65 254.2 650 38.8
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 4.1e-65 253.4 635 38.9
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 1.3e-63 248.4 628 36.8
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 6.6e-63 246.1 551 39.2
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 1.5e-62 245.0 620 38.9
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 2.5e-62 244.2 711 34.2
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 3.3e-62 243.8 634 37.5
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 5.2e-60 236.5 626 37.7
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 6.8e-60 236.1 707 36.2
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 6.8e-60 236.1 632 36.6
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 1.5e-59 235.0 641 36.2
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 2.6e-59 234.2 603 35.3
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 1.3e-58 231.9 589 36.3
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 8.3e-58 229.2 619 33.8
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 1.1e-57 228.8 619 36.7
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 1.4e-57 228.4 657 37.3
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 4.1e-57 226.9 604 37.1
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 7.0e-57 226.1 637 38.3
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 9.2e-57 225.7 637 35.6
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 3.5e-56 223.8 629 37.0
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 4.5e-56 223.4 678 32.7
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 5.0e-55 219.9 640 36.7
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 7.3e-54 216.1 461 37.1
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 4.7e-53 213.4 647 34.8
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 2.0e-51 208.0 624 34.9
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 2.0e-51 208.0 614 37.3
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 5.8e-51 206.5 649 33.3
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 1.3e-50 205.3 637 36.1
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 8.3e-50 202.6 594 33.0
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.4e-49 201.1 610 34.1
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.6e-48 198.4 523 36.1
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 4.6e-48 196.8 614 37.3
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 4.6e-48 196.8 582 35.6
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.3e-47 195.3 600 35.7
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 1.5e-46 191.8 644 31.8
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 3.3e-46 190.7 498 36.3
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 4.3e-46 190.3 604 34.9
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 9.5e-46 189.1 322 43.8
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 9.5e-46 189.1 322 43.8
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.2e-45 188.7 332 43.1
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 2.1e-45 188.0 342 39.5
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 8.0e-45 186.0 327 41.0
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 1.1e-44 185.7 566 34.5
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 4.0e-44 183.7 301 46.8
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 1.3e-42 178.7 538 35.9
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 8.3e-42 176.0 528 32.8
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 8.3e-42 176.0 600 32.5
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 1.4e-41 175.3 318 43.4
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 1.4e-41 175.3 509 33.4
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 1.9e-41 174.9 570 31.8
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 2.4e-41 174.5 601 34.3
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 3.2e-41 174.1 544 32.5
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 4.1e-41 173.7 602 34.2
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 1.2e-40 172.2 322 42.2
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 2.1e-40 171.4 615 31.1
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 7.8e-40 169.5 581 31.0
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 1.3e-39 168.7 584 34.6
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 2.3e-39 167.9 318 38.1
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 3.9e-39 167.2 579 32.8
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 3.9e-39 167.2 579 32.8
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 5.1e-39 166.8 613 33.9
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 2.5e-38 164.5 643 29.2
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 3.3e-38 164.1 613 33.9
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 4.3e-38 163.7 586 31.4
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 1.6e-37 161.8 491 33.6
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 2.1e-37 161.4 593 31.5
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 4.7e-37 160.2 392 33.9
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 6.2e-37 159.8 609 31.4
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 2.0e-35 154.8 583 28.6
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 7.6e-35 152.9 306 37.3
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.2e-34 151.4 595 32.3
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 7.1e-33 146.4 624 32.9
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 3.5e-32 144.1 345 31.9
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 6.0e-32 143.3 499 30.9
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 7.8e-32 142.9 597 29.8
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.3e-31 142.1 602 28.1
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 1.3e-31 142.1 602 30.9
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 2.3e-31 141.4 552 31.9
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 6.6e-31 139.8 596 30.2
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 8.6e-31 139.4 602 32.2
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 1.5e-30 138.7 621 32.4
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 1.9e-30 138.3 605 30.2
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 5.6e-30 136.7 327 37.6
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 8.1e-29 132.9 809 26.5
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 3.1e-28 131.0 597 30.2
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 2.9e-26 124.4 143 46.2
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 8.4e-26 122.9 612 29.4
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 4.2e-25 120.6 375 29.9
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.1e-24 118.2 499 27.3
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 6.0e-24 116.7 213 41.8
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 1.0e-23 115.9 487 29.4
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 8.7e-23 112.8 645 26.2
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 8.1e-21 106.3 338 29.9
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 2.4e-20 104.8 158 48.1
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.5e-19 102.1 592 27.2
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 5.8e-19 100.1 372 29.8
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 1.7e-15 88.6 221 34.8
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 4.3e-14 84.0 644 25.5
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 5.6e-14 83.6 316 30.1
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 5.6e-14 83.6 76 63.2
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 3.6e-13 80.9 180 33.3
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.4e-12 79.0 446 26.5
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 1.2e-11 75.9 194 31.4
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 2.0e-11 75.1 173 31.8
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 5.8e-11 73.6 340 25.6
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 9.9e-11 72.8 509 24.8
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 1.3e-10 72.4 565 23.7
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 6.4e-10 70.1 220 30.5
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 6.4e-10 70.1 245 28.2
SGA_v2.0_scaffold121G33034 Striga asiatica HOM05D005642 ORTHO05D006672 6.4e-10 70.1 206 27.7
Sopen05g033570 Solanum pennellii HOM05D003044 ORTHO05D001869 1.4e-09 68.9 392 29.3
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 1.2e-08 65.9 466 28.3
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 1.6e-08 65.5 255 32.5
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 2.1e-08 65.1 402 27.4
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 2.1e-08 65.1 255 32.5
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 4.6e-08 63.9 286 34.6
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 1.3e-07 62.4 530 23.2
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 2.3e-07 61.6 417 26.4
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 3.0e-07 61.2 249 28.1
Potri.010G244700 Populus trichocarpa HOM05D003044 ORTHO05D001869 5.1e-07 60.5 261 26.8
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 6.7e-07 60.1 252 28.2
Cc06_g08320 Coffea canephora HOM05D006756 ORTHO05D001869 8.7e-07 59.7 259 26.6
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 2.5e-06 58.2 55 54.5
Atru.chr7.1133 Acer truncatum HOM05D006756 ORTHO05D001869 4.3e-06 57.4 250 27.6
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 4.3e-06 57.4 261 26.1
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 4.3e-06 57.4 433 27.7
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 5.6e-06 57.0 408 27.7
Actinidia21975 Actinidia chinensis HOM05D006756 ORTHO05D001869 7.4e-06 56.6 236 28.0
Lsat_1_v5_gn_8_21821 Lactuca sativa HOM05D003044 ORTHO05D001869 7.4e-06 56.6 262 29.8


User provided reference genes

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