Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 0.0e+00 1768.8 918 100.0
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 9.6e-295 1016.9 939 61.2
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 1.1e-287 993.4 955 58.8
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.5e-287 993.0 958 59.4
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 2.0e-284 982.6 964 58.6
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 8.4e-283 977.2 960 57.8
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.2e-282 975.3 966 59.1
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.8e-280 969.5 950 58.0
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 4.3e-279 964.9 961 58.3
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 4.8e-278 961.4 958 57.6
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 4.1e-277 958.4 953 58.0
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.0e-276 956.1 958 57.4
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 8.5e-275 950.7 949 58.0
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.1e-274 950.3 950 57.2
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 2.5e-274 949.1 958 57.7
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 3.2e-274 948.7 959 57.5
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 1.6e-273 946.4 960 57.1
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 4.3e-271 938.3 1032 55.5
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 2.2e-270 936.0 953 56.7
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 1.5e-268 929.9 945 56.8
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 2.0e-268 929.5 941 57.9
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 3.8e-267 925.2 954 56.8
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 6.1e-265 917.9 926 56.3
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 3.0e-264 915.6 942 56.9
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 9.7e-263 910.6 1007 53.6
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 2.8e-262 909.1 946 55.4
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 2.8e-262 909.1 1006 53.9
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.4e-261 906.7 956 55.1
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.5e-260 903.3 1012 53.2
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 2.6e-260 902.5 938 56.1
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.2e-259 899.4 947 56.0
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 5.5e-258 894.8 945 54.7
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 8.0e-257 891.0 1007 52.6
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 6.7e-256 887.9 848 61.2
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.5e-255 886.7 953 55.3
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.3e-255 885.6 1030 51.8
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 3.7e-254 882.1 968 54.3
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 3.1e-253 879.0 952 54.4
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 1.0e-248 864.0 968 53.6
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 1.4e-248 863.6 1005 52.0
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 7.5e-247 857.8 943 54.1
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.7e-246 856.7 938 53.3
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 4.1e-245 852.0 853 58.3
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 2.0e-244 849.7 917 55.4
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 3.5e-244 849.0 921 53.3
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 2.1e-241 839.7 853 59.2
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 5.7e-239 831.6 956 52.4
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 5.7e-239 831.6 852 57.2
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.7e-238 828.9 959 52.8
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 7.0e-237 824.7 903 54.4
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.2e-236 823.9 930 51.2
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 1.6e-236 823.5 941 51.2
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 3.3e-234 815.8 932 51.8
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 8.0e-225 784.6 1096 45.9
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 8.9e-224 781.2 928 50.1
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.5e-223 780.4 941 50.4
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 9.8e-223 777.7 943 50.4
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 4.9e-222 775.4 970 50.5
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.4e-221 773.9 953 49.5
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 2.7e-220 769.6 946 49.8
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 4.6e-220 768.8 973 47.9
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 2.3e-219 766.5 1001 48.8
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.0e-219 766.1 951 49.4
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 8.6e-219 764.6 964 47.9
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.9e-218 763.5 925 51.1
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 2.1e-217 760.0 962 47.7
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 4.4e-215 752.3 945 48.3
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 5.8e-215 751.9 978 47.4
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.2e-212 744.2 942 48.5
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 3.5e-212 742.7 773 54.9
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 6.6e-211 738.4 820 52.3
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.2e-209 734.2 771 55.9
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 3.4e-207 726.1 1032 46.4
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 8.3e-206 721.5 964 46.7
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 1.9e-205 720.3 987 46.4
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 3.0e-203 713.0 803 53.3
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 8.1e-201 704.9 939 45.6
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.3e-198 697.6 957 45.8
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.1e-197 694.5 948 45.7
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.9e-194 683.7 913 47.0
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 2.1e-193 680.2 932 46.2
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 1.3e-190 671.0 1021 41.8
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.9e-189 667.2 949 45.4
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.6e-188 664.1 1052 42.3
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 1.6e-188 664.1 919 45.6
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.6e-188 664.1 906 45.6
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 1.1e-186 657.9 1001 43.0
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 5.6e-186 655.6 921 44.3
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 9.6e-186 654.8 920 44.7
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 1.5e-183 647.5 929 44.8
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 6.4e-182 642.1 918 44.7
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 1.4e-181 641.0 925 44.1
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.9e-181 640.6 914 43.7
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 4.2e-181 639.4 955 43.1
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 9.3e-181 638.3 914 43.3
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 3.5e-180 636.3 926 43.2
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 3.5e-180 636.3 922 43.6
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 1.0e-179 634.8 913 43.2
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 2.3e-179 633.6 931 43.2
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 2.3e-179 633.6 565 62.5
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 3.9e-179 632.9 927 44.0
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 5.1e-179 632.5 926 43.1
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 2.0e-175 620.5 589 58.1
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 2.6e-175 620.2 909 43.7
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 2.2e-174 617.1 611 56.6
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 3.0e-171 606.7 559 59.2
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 3.4e-167 593.2 947 42.1
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 1.3e-161 574.7 995 41.1
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 3.2e-157 560.1 837 44.9
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.1e-156 557.4 696 49.0
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 2.5e-149 533.9 925 40.1
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.6e-138 497.3 583 51.8
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 2.6e-138 497.3 770 43.1
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 4.5e-135 486.5 754 43.0
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 3.8e-134 483.4 931 37.6
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 8.8e-131 472.2 769 40.2
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 6.3e-129 466.1 383 64.8
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 6.3e-129 466.1 1003 35.6
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 4.5e-127 459.9 548 48.2
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 2.1e-124 451.1 488 51.6
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.8e-123 448.0 523 49.3
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 2.0e-122 444.5 772 39.1
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 3.1e-120 437.2 796 38.4
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 3.6e-116 423.7 1005 32.0
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 5.2e-115 419.9 1018 31.8
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 1.5e-114 418.3 531 48.4
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 2.9e-113 414.1 418 55.5
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 1.4e-112 411.8 795 37.5
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 7.5e-106 389.4 557 42.9
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.1e-101 375.6 335 57.9
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 2.5e-101 374.4 726 37.7
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-96 359.0 1055 29.2
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.6e-95 355.1 1028 30.8
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 3.4e-90 337.4 618 40.1
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 4.0e-83 313.9 287 58.5
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.9e-78 297.4 267 61.0
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 2.4e-72 278.1 256 59.0
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 2.5e-69 268.1 332 48.8
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 7.4e-69 266.5 634 32.5
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 6.2e-68 263.5 237 57.4
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 2.0e-58 231.9 380 42.4
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 4.5e-58 230.7 356 44.1
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 5.8e-58 230.3 458 38.0
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.6e-52 212.2 344 41.9
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.7e-52 211.1 186 61.3
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 3.4e-50 204.5 398 39.9
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 1.0e-49 203.0 386 38.1
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 7.2e-48 196.8 229 49.8
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 4.8e-44 184.1 330 40.0
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 4.5e-42 177.6 203 49.3
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.2e-39 169.5 295 44.1
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 7.4e-37 160.2 538 29.6
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 4.1e-35 154.5 227 44.5
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 4.5e-34 151.0 184 47.3
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.3e-33 149.4 148 53.4
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 1.9e-32 145.6 133 59.4
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.4e-30 139.4 219 46.1
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 5.7e-29 134.0 194 43.3
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 8.5e-25 120.2 99 65.7
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.1e-24 119.8 152 48.7
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 1.6e-23 115.9 151 45.7
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 3.0e-22 111.7 171 45.0
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 6.7e-22 110.5 297 34.7
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 3.5e-18 98.2 87 60.9
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 5.9e-18 97.4 144 41.0
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 1.3e-17 96.3 162 38.9
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 2.2e-17 95.5 139 41.0
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 1.6e-15 89.4 85 58.8
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 1.6e-15 89.4 74 60.8
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.7e-15 88.6 75 54.7
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 3.6e-15 88.2 95 48.4
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 4.7e-15 87.8 73 60.3
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.4e-14 86.3 113 42.5
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.2e-13 83.2 185 34.1
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 1.8e-11 75.9 198 32.3
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.4e-11 75.5 116 39.7
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 4.1e-11 74.7 81 42.0
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 9.5e-08 63.5 185 34.1
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 2.8e-07 62.0 98 39.8
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 4.0e-06 58.2 50 60.0


User provided reference genes

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