Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 0.0e+00 1103.2 641 100.0
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 1.3e-221 773.5 648 74.1
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 4.8e-216 755.0 648 74.7
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 1.1e-212 743.8 645 72.4
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.4e-212 742.7 643 72.5
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 3.9e-210 735.3 649 72.7
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 1.3e-205 720.3 640 69.8
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.1e-204 717.2 646 71.8
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.6e-203 713.4 646 71.5
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 6.0e-203 711.4 643 70.1
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.0e-202 709.1 646 71.7
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 3.7e-200 702.2 646 70.1
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 3.2e-196 689.1 647 66.8
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 4.6e-195 685.3 693 63.9
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 2.3e-194 682.9 556 74.1
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 9.7e-193 677.6 646 69.0
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 2.8e-192 676.0 641 66.9
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.2e-189 666.4 646 68.9
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 8.5e-189 664.5 647 66.3
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 3.2e-188 662.5 652 67.8
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 4.2e-188 662.1 647 67.2
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 3.7e-184 649.0 566 66.6
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 5.3e-183 645.2 647 62.9
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 9.1e-183 644.4 646 65.3
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 1.5e-182 643.7 641 67.2
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 2.2e-181 639.8 658 67.8
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 2.2e-181 639.8 645 66.0
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 2.2e-181 639.8 641 66.9
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.9e-181 639.4 658 65.8
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 6.5e-181 638.3 649 65.8
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 6.5e-181 638.3 501 75.0
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 3.6e-179 632.5 570 68.8
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 3.6e-179 632.5 656 65.7
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 3.6e-179 632.5 646 65.0
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 2.0e-177 626.7 640 67.0
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.2e-176 623.2 654 63.8
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 1.8e-175 620.2 648 65.4
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 2.4e-175 619.8 648 63.4
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 3.1e-175 619.4 524 70.0
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 5.3e-175 618.6 647 61.5
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 1.5e-174 617.1 565 63.5
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 3.4e-174 615.9 648 61.0
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.3e-173 614.0 529 67.5
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 1.3e-173 614.0 646 65.2
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.7e-173 613.6 640 66.6
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 5.0e-173 612.1 649 65.6
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 8.5e-173 611.3 653 60.5
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 1.1e-172 610.9 650 62.9
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.1e-172 610.9 650 62.6
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 4.7e-171 605.5 655 61.4
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 8.0e-171 604.7 547 65.4
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.4e-170 604.0 652 65.3
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 2.3e-170 603.2 651 65.1
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 3.0e-170 602.8 666 64.3
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 5.2e-170 602.1 568 68.1
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 2.0e-169 600.1 648 64.5
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 2.8e-168 596.3 649 59.9
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 1.1e-167 594.3 518 69.5
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 4.5e-166 589.0 566 67.8
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 2.2e-165 586.6 673 57.9
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 3.8e-165 585.9 645 62.6
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 8.5e-165 584.7 646 63.0
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 2.5e-164 583.2 640 63.9
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 2.5e-164 583.2 580 62.2
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 7.2e-164 581.6 593 62.4
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 8.0e-163 578.2 695 59.0
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 8.8e-162 574.7 650 64.3
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 7.5e-161 571.6 651 62.4
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 2.8e-160 569.7 647 63.4
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 3.1e-159 566.2 675 58.8
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 5.3e-159 565.5 647 62.0
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.2e-158 564.3 649 56.2
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 2.2e-157 560.1 471 67.7
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 2.9e-157 559.7 550 66.9
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 2.0e-153 547.0 645 61.4
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.3e-152 544.3 474 69.4
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 6.3e-152 542.0 520 62.3
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.4e-151 540.0 500 66.8
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 4.1e-151 539.3 550 64.2
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 4.5e-150 535.8 547 60.1
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 5.9e-150 535.4 572 58.6
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 1.3e-149 534.3 589 60.1
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 3.6e-147 526.2 581 59.9
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 1.0e-146 524.6 651 58.1
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 1.5e-145 520.8 650 58.2
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 4.4e-145 519.2 655 55.7
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 3.1e-143 513.1 649 58.2
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 7.8e-142 508.4 668 56.7
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 2.1e-139 500.4 658 56.5
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 8.0e-139 498.4 521 60.5
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 8.9e-138 495.0 649 56.9
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 2.0e-137 493.8 486 60.7
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 5.8e-137 492.3 655 55.6
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 7.5e-137 491.9 370 77.0
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 9.8e-137 491.5 649 56.4
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 4.9e-136 489.2 710 51.3
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 6.4e-136 488.8 656 56.2
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 5.6e-132 475.7 646 55.0
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 3.1e-130 469.9 351 72.6
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 1.5e-129 467.6 652 55.7
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 3.4e-129 466.5 525 58.7
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 1.2e-126 458.0 482 59.1
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.5e-124 451.1 493 57.0
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 2.8e-123 446.8 639 52.7
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 8.9e-122 441.8 379 73.6
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 2.6e-121 440.3 665 53.1
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 3.4e-121 439.9 642 47.2
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 9.9e-121 438.3 379 73.1
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.3e-120 438.0 379 73.1
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.3e-120 438.0 379 73.1
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 3.2e-119 433.3 556 55.0
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 1.3e-117 427.9 656 51.4
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.1e-116 424.9 538 55.6
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 8.4e-104 382.1 314 76.8
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 8.7e-101 372.1 480 55.4
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 7.1e-95 352.4 345 57.7
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 1.5e-92 344.7 327 61.2
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 3.1e-90 337.0 532 47.2
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 6.9e-90 335.9 348 55.7
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.9e-88 329.7 470 50.9
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 1.9e-79 301.2 373 49.6
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 4.3e-76 290.0 481 42.6
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 1.4e-69 268.5 394 46.2
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 3.7e-67 260.4 550 38.5
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 3.0e-61 240.7 345 46.4
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 5.1e-61 240.0 551 39.6
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 9.1e-58 229.2 271 63.1
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 7.7e-57 226.1 321 45.2
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.8e-53 214.9 345 53.6
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 5.9e-49 199.9 169 66.9
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 6.8e-45 186.4 134 74.6
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 2.8e-43 181.0 185 58.9
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 1.5e-39 168.7 103 79.6
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 4.2e-31 140.6 282 35.5
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 5.2e-29 133.7 251 37.5
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.2e-27 128.3 255 38.0
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 4.6e-25 120.6 232 33.2
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 5.6e-23 113.6 155 53.5
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 4.4e-20 104.0 61 86.9
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 9.8e-20 102.8 234 53.4
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 2.2e-19 101.7 90 56.7
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 5.0e-16 90.5 162 53.7
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 5.0e-16 90.5 53 81.1
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.4e-13 82.4 139 56.1
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 3.7e-11 74.3 41 85.4
Ca_02964_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.1e-09 68.6 164 37.8
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 3.6e-06 57.8 43 65.1
Actinidia21317 Actinidia chinensis HOM05D004839 ORTHO05D006012 8.1e-06 56.6 39 71.8


User provided reference genes

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