Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0168 Punica granatum HOM05D000880 ORTHO05D007053 1.5e-256 889.0 448 100.0
PGR044G2013 Punica granatum HOM05D000880 ORTHO05D007053 3.3e-91 339.7 475 48.2
Gohir.A11G114100 Gossypium hirsutum HOM05D000880 ORTHO05D007053 1.4e-81 307.8 470 46.2
Gorai.007G127700 Gossypium raimondii HOM05D000880 ORTHO05D007053 7.0e-81 305.4 470 46.0
CiPaw.08G094700 Carya illinoinensis HOM05D000880 ORTHO05D007053 1.6e-80 304.3 481 44.3
Atru.chr5.1139 Acer truncatum HOM05D000880 ORTHO05D007053 2.0e-80 303.9 470 45.1
Cfa005905 Carpinus fangiana HOM05D000880 ORTHO05D007053 2.0e-80 303.9 480 44.0
Haze_04945 Corylus avellana HOM05D000880 ORTHO05D007053 1.0e-79 301.6 476 44.5
COL.COLO4_23337 Corchorus olitorius HOM05D000880 ORTHO05D007053 1.7e-79 300.8 485 44.9
Thecc.01G301400 Theobroma cacao HOM05D000880 ORTHO05D007053 2.9e-79 300.1 476 44.5
GSVIVG01028027001 Vitis vinifera HOM05D000880 ORTHO05D007053 8.5e-79 298.5 469 43.7
RcHm_v2.0_Chr6g0294121 Rosa chinensis HOM05D000880 ORTHO05D007053 1.5e-78 297.7 472 44.1
Manes.05G061800 Manihot esculenta HOM05D000880 ORTHO05D007053 2.5e-78 297.0 475 43.2
Prupe.8G262200 Prunus persica HOM05D000880 ORTHO05D007053 9.4e-78 295.0 472 43.9
DCAR_018329 Daucus carota HOM05D000880 ORTHO05D007053 1.2e-77 294.7 482 42.5
Glyma.02G017400 Glycine max HOM05D000880 ORTHO05D007053 1.2e-77 294.7 474 43.5
QL12p028391 Quercus lobata HOM05D000880 ORTHO05D007053 2.1e-77 293.9 484 43.8
Ca_10329_v3 Cicer arietinum L. HOM05D000880 ORTHO05D007053 6.1e-77 292.4 473 42.9
VMungo0720G1277 Vigna mungo HOM05D000880 ORTHO05D007053 8.0e-77 292.0 472 42.8
Hund05431 Selenicereus undatus HOM05D000880 ORTHO05D007053 1.0e-76 291.6 474 42.8
Glyma.10G017800 Glycine max HOM05D000880 ORTHO05D007053 1.4e-76 291.2 475 43.6
TWI59G0706 Tripterygium wilfordii HOM05D000880 ORTHO05D007053 1.4e-76 291.2 474 42.6
Rhsim13G0009800 Rhododendron simsii HOM05D000880 ORTHO05D007053 1.8e-76 290.8 471 43.3
Ciclev10018978m.g Citrus clementina HOM05D000880 ORTHO05D007053 2.3e-76 290.4 472 44.1
Actinidia01490 Actinidia chinensis HOM05D000880 ORTHO05D007053 4.0e-76 289.7 473 42.9
CSS0009761 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D007053 4.0e-76 289.7 473 43.6
Eucgr.K03489 Eucalyptus grandis HOM05D000880 ORTHO05D007053 4.0e-76 289.7 470 43.2
MD03G1288900 Malus domestica HOM05D000880 ORTHO05D007053 8.8e-76 288.5 469 43.5
EL10Ac7g17514 Beta vulgaris HOM05D000880 ORTHO05D007053 1.2e-75 288.1 484 42.6
Lj5g0001867 Lotus japonicus HOM05D000880 ORTHO05D007053 1.5e-75 287.7 477 43.4
Cpa.g.sc9.255 Carica papaya HOM05D000880 ORTHO05D007053 2.6e-75 287.0 453 44.4
Lalb_Chr02g0146401 Lupinus albus HOM05D000880 ORTHO05D007053 7.5e-75 285.4 474 41.6
MBI14_g32928_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D007053 7.5e-75 285.4 472 44.1
FvH4_2g25810 Fragaria vesca HOM05D000880 ORTHO05D007053 9.7e-75 285.0 472 42.2
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 9.7e-75 285.0 472 42.2
Gorai.004G090500 Gossypium raimondii HOM05D000880 ORTHO05D007053 9.7e-75 285.0 476 41.0
Aqoxy2G02934 Aquilegia oxysepala HOM05D000880 ORTHO05D007053 1.3e-74 284.6 467 43.0
Phvul.007G147200 Phaseolus vulgaris HOM05D000880 ORTHO05D007053 1.3e-74 284.6 468 42.9
Dinv02562 Davidia involucrata HOM05D000880 ORTHO05D007053 1.7e-74 284.3 481 43.0
Sc05g0003770 Simmondsia chinensis HOM05D000880 ORTHO05D007053 1.7e-74 284.3 491 42.4
Potri.014G128400 Populus trichocarpa HOM05D000880 ORTHO05D007053 2.2e-74 283.9 472 42.2
arahy.Tifrunner.gnm1.ann1.VZZJ8Q Arachis hypogaea HOM05D000880 ORTHO05D007053 2.8e-74 283.5 498 42.2
Ah.15g093160 Amaranthus hybridus HOM05D000880 ORTHO05D007053 3.7e-74 283.1 461 43.6
MSTRG.9184 Avicennia marina HOM05D000880 ORTHO05D007053 4.8e-74 282.7 481 42.8
TPR.G33956 Trifolium pratense HOM05D000880 ORTHO05D007053 8.3e-74 282.0 475 41.3
Thhalv10010145m.g Eutrema salsugineum HOM05D000880 ORTHO05D007053 1.4e-73 281.2 474 42.6
vmacro02446 Vaccinium macrocarpon HOM05D000880 ORTHO05D007053 1.4e-73 281.2 487 41.3
Migut.D00148 Erythranthe guttata HOM05D000880 ORTHO05D007053 3.1e-73 280.0 484 42.6
Medtr1g088410 Medicago truncatula HOM05D000880 ORTHO05D007053 3.1e-73 280.0 473 41.2
Dinv33058 Davidia involucrata HOM05D000880 ORTHO05D007053 4.1e-73 279.6 475 41.7
SalBow3G0448 Salvia bowleyana HOM05D000880 ORTHO05D007053 4.1e-73 279.6 469 43.9
Solyc09g075190.3 Solanum lycopersicum HOM05D000880 ORTHO05D007053 4.1e-73 279.6 484 42.6
Sopen09g030010 Solanum pennellii HOM05D000880 ORTHO05D007053 5.3e-73 279.3 484 42.6
PSO384G2678 Papaver somniferum HOM05D000880 ORTHO05D007053 7.0e-73 278.9 474 41.8
Lalb_Chr21g0309241 Lupinus albus HOM05D000880 ORTHO05D007053 9.1e-73 278.5 479 41.1
PSO339G1812 Papaver somniferum HOM05D000880 ORTHO05D007053 1.2e-72 278.1 472 41.3
THA.LOC104802176 Tarenaya hassleriana HOM05D000880 ORTHO05D007053 1.2e-72 278.1 474 41.8
Hma1.2p1_0491F.1_g164650 Hydrangea macrophylla HOM05D000880 ORTHO05D007053 1.6e-72 277.7 284 56.3
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.0e-72 277.3 454 42.1
CAN.G472.10 Capsicum annuum HOM05D000880 ORTHO05D007053 2.7e-72 276.9 479 42.2
Psat6g165160 Pisum sativum HOM05D000880 ORTHO05D007053 2.7e-72 276.9 478 41.8
Carub.0005s2034 Capsella rubella HOM05D000880 ORTHO05D007053 3.5e-72 276.6 474 42.4
AT3G53760 Arabidopsis thaliana HOM05D000880 ORTHO05D007053 5.9e-72 275.8 474 41.8
AL5G34740 Arabidopsis lyrata HOM05D000880 ORTHO05D007053 1.0e-71 275.0 474 41.6
ClCG03G013010 Citrullus lanatus HOM05D000880 ORTHO05D007053 1.0e-71 275.0 476 41.4
BcaB01g00245 Brassica carinata HOM05D000880 ORTHO05D007053 1.7e-71 274.2 474 42.0
A09p46740 Brassica napus HOM05D000880 ORTHO05D007053 1.7e-71 274.2 474 42.0
BraA09t40136Z Brassica rapa HOM05D000880 ORTHO05D007053 1.7e-71 274.2 474 42.0
MELO3C026912.2 Cucumis melo HOM05D000880 ORTHO05D007053 1.7e-71 274.2 480 41.9
Aa31LG10G9270 Aethionema arabicum HOM05D000880 ORTHO05D007053 2.2e-71 273.9 475 40.8
arahy.Tifrunner.gnm1.ann1.JXQ8LX Arachis hypogaea HOM05D000880 ORTHO05D007053 2.9e-71 273.5 324 52.2
BcaC07g39735 Brassica carinata HOM05D000880 ORTHO05D007053 3.8e-71 273.1 469 42.0
Oeu054121.1 Olea europaea HOM05D000880 ORTHO05D007053 3.8e-71 273.1 492 41.1
CARHR163650 Cardamine hirsuta HOM05D000880 ORTHO05D007053 5.0e-71 272.7 469 41.4
Cc01_g20910 Coffea canephora HOM05D000880 ORTHO05D007053 5.0e-71 272.7 481 42.6
Sp5g08620 Schrenkiella parvula HOM05D000880 ORTHO05D007053 6.5e-71 272.3 476 43.5
CsaV3_1G043050 Cucumis sativus L. HOM05D000880 ORTHO05D007053 8.5e-71 271.9 479 41.5
BolC8t50508H Brassica oleracea HOM05D000880 ORTHO05D007053 1.1e-70 271.6 474 41.8
C08p29070 Brassica napus HOM05D000880 ORTHO05D007053 1.5e-70 271.2 474 41.6
TAR365G0367 Trochodendron aralioides HOM05D000880 ORTHO05D007053 1.9e-70 270.8 305 53.1
HPP92_007056 Vanilla planifolia HOM05D000880 ORTHO05D007053 4.2e-70 269.6 476 41.0
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 6.1e-69 265.8 458 41.3
Peaxi162Scf00001g42030 Petunia axillaris HOM05D000880 ORTHO05D007053 6.1e-69 265.8 477 41.3
Zm00001eb282720 Zea mays HOM05D000880 ORTHO05D007053 1.2e-67 261.5 477 40.9
CDE01G0629 Ceratophyllum demersum HOM05D000880 ORTHO05D007053 4.4e-67 259.6 465 41.7
Lsat_1_v5_gn_8_164240 Lactuca sativa HOM05D000880 ORTHO05D007053 7.5e-67 258.8 462 40.0
HanXRQChr04g0114151 Helianthus annuus HOM05D000880 ORTHO05D007053 1.3e-66 258.1 456 40.8
Nitab4.5_0002433g0080 Nicotiana tabacum HOM05D000880 ORTHO05D007053 4.1e-65 253.1 480 39.6
Os05g0154500 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D007053 9.1e-65 251.9 473 40.0
ATR0057G121 Amborella trichopoda HOM05D000880 ORTHO05D007053 7.7e-64 248.8 504 36.7
ECA236G1870 Erigeron canadensis HOM05D000880 ORTHO05D007053 7.7e-64 248.8 462 39.8
unitig_32.g10658 Utricularia gibba HOM05D000880 ORTHO05D007053 2.5e-62 243.8 449 39.6
Sed0026689 Sechium edule HOM05D000880 ORTHO05D007053 3.3e-62 243.4 468 40.2
Gohir.A08G076500 Gossypium hirsutum HOM05D000880 ORTHO05D007053 7.2e-62 242.3 442 41.4
PGSC0003DMG400031813 Solanum tuberosum HOM05D000880 ORTHO05D007053 3.6e-61 240.0 319 47.6
Mapoly0009s0235 Marchantia polymorpha HOM05D000880 ORTHO05D007053 1.0e-55 221.9 489 37.8
MD11G1309000 Malus domestica HOM05D000880 ORTHO05D007053 1.1e-54 218.4 448 39.1
Lsat_1_v5_gn_9_43261 Lactuca sativa HOM05D000880 ORTHO05D007053 3.3e-54 216.9 491 35.6
SMO364G0941 Selaginella moellendorffii HOM05D000880 ORTHO05D007053 4.3e-54 216.5 451 37.3
AagrBONN_evm.TU.Sc2ySwM_117.410 Anthoceros agrestis HOM05D000880 ORTHO05D007053 1.8e-52 211.1 480 36.2
SGA_v2.0_scaffold1G00361 Striga asiatica HOM05D000880 ORTHO05D007053 8.9e-52 208.8 494 34.8
BcaB01g00241 Brassica carinata HOM05D000880 ORTHO05D007053 1.3e-50 204.9 202 57.9
Pp3c14_20420 Physcomitrium patens HOM05D000880 ORTHO05D007053 1.7e-50 204.5 470 36.6
ECA247G4025 Erigeron canadensis HOM05D000880 ORTHO05D007053 2.9e-50 203.8 454 35.0
Nitab4.5_0001879g0170 Nicotiana tabacum HOM05D000880 ORTHO05D007053 4.9e-50 203.0 208 54.3
AUR62008670 Chenopodium quinoa HOM05D000880 ORTHO05D007053 8.3e-50 202.2 504 36.5
Lj5g0006803 Lotus japonicus HOM05D000880 ORTHO05D007053 2.7e-48 197.2 427 38.4
AUR62025574 Chenopodium quinoa HOM05D000880 ORTHO05D007053 5.6e-46 189.5 459 36.6
MELO3C015161.2 Cucumis melo HOM05D000880 ORTHO05D007053 2.2e-42 177.6 422 35.3
Lj2A1196G43 Lonicera japonica HOM05D000880 ORTHO05D007053 1.1e-41 175.3 138 67.4
arahy.Tifrunner.gnm1.ann1.D5VDWJ Arachis hypogaea HOM05D000880 ORTHO05D007053 5.4e-41 172.9 169 58.0
Gohir.D08G086000 Gossypium hirsutum HOM05D000880 ORTHO05D007053 1.2e-40 171.8 356 35.7
Nn3g21501 Nelumbo nucifera HOM05D000880 ORTHO05D007053 2.7e-40 170.6 370 38.1
SHI15144 Sapria himalayana HOM05D000880 ORTHO05D007053 6.0e-40 169.5 424 34.2
HanXRQChr10g0285011 Helianthus annuus HOM05D000880 ORTHO05D007053 3.3e-38 163.7 185 50.8
AUR62018540 Chenopodium quinoa HOM05D000880 ORTHO05D007053 4.3e-38 163.3 395 34.7
Gohir.D11G119200 Gossypium hirsutum HOM05D000880 ORTHO05D007053 1.0e-31 142.1 314 37.9
Lj2A1196G44 Lonicera japonica HOM05D000880 ORTHO05D007053 1.2e-24 118.6 313 35.1
CBR_g8601 Chara braunii HOM05D000880 ORTHO05D007053 3.5e-24 117.1 194 38.1
PGR044G1585 Punica granatum HOM05D000880 ORTHO05D017463 4.0e-20 103.6 61 78.7
SEGI_07599 Sequoiadendron giganteum HOM05D000880 ORTHO05D007053 1.9e-14 84.7 118 43.2
Actinidia24361 Actinidia chinensis HOM05D000880 ORTHO05D007053 5.6e-14 83.2 202 34.7
PGR044G2165 Punica granatum HOM05D000009 ORTHO05D000008 2.0e-11 74.7 52 71.2
Lj9C128T17 Lonicera japonica HOM05D000880 ORTHO05D007053 4.9e-10 70.1 152 38.2
PRCOL_00000976 Prasinoderma coloniale HOM05D000880 ORTHO05D007053 8.4e-10 69.3 212 26.9
arahy.Tifrunner.gnm1.ann1.RW9HBG Arachis hypogaea HOM05D000997 ORTHO05D017463 1.9e-09 68.2 130 41.5
CBR_g8603 Chara braunii HOM05D000880 ORTHO05D007053 1.8e-07 61.6 46 58.7
HanXRQChr10g0285001 Helianthus annuus HOM05D000880 ORTHO05D007053 3.9e-07 60.5 196 31.1
arahy.Tifrunner.gnm1.ann1.67JHEV Arachis hypogaea HOM05D000880 ORTHO05D017463 5.6e-06 56.6 131 35.1
MCO03G526 Micromonas commoda HOM05D000880 ORTHO05D007053 5.6e-06 56.6 49 55.1
Oeu040636.1 Olea europaea HOM05D000880 ORTHO05D017463 5.6e-06 56.6 35 77.1


User provided reference genes

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