Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3042 Punica granatum HOM05D006143 ORTHO05D007587 2.0e-300 1035.0 538 100.0
Duzib235G0124 Durio zibethinus HOM05D006143 ORTHO05D007587 6.6e-118 428.7 464 54.3
Eucgr.E03166 Eucalyptus grandis HOM05D006143 ORTHO05D007587 8.6e-118 428.3 456 55.3
Manes.16G034450 Manihot esculenta HOM05D006143 ORTHO05D007587 1.2e-116 424.5 454 52.0
Dinv17374 Davidia involucrata HOM05D006143 ORTHO05D007587 5.7e-114 415.6 457 53.6
GSVIVG01021150001 Vitis vinifera HOM05D006143 ORTHO05D007587 4.9e-113 412.5 444 53.2
CSS0012799 Camellia sinensis var. sinensis HOM05D006143 ORTHO05D007587 5.4e-112 409.1 445 51.2
Potri.011G062100 Populus trichocarpa HOM05D006143 ORTHO05D007587 1.6e-111 407.5 447 52.1
Thecc.06G177300 Theobroma cacao HOM05D006143 ORTHO05D007587 3.5e-111 406.4 449 53.9
Prupe.4G055900 Prunus persica HOM05D006143 ORTHO05D007587 5.9e-111 405.6 460 51.3
MD05G1306600 Malus domestica HOM05D006143 ORTHO05D007587 5.0e-110 402.5 449 50.8
Sabra11G0044000 Salix brachista HOM05D006143 ORTHO05D007587 6.6e-110 402.1 447 50.6
RcHm_v2.0_Chr5g0009801 Rosa chinensis HOM05D006143 ORTHO05D007587 1.1e-109 401.4 445 50.6
CiPaw.10G054900 Carya illinoinensis HOM05D006143 ORTHO05D007587 2.1e-108 397.1 448 50.7
FAN11G1643 Fragaria x ananassa HOM05D006143 ORTHO05D007587 1.0e-107 394.8 440 51.1
COL.COLO4_31385 Corchorus olitorius HOM05D006143 ORTHO05D007587 5.2e-107 392.5 455 50.5
Hma1.2p1_0155F.1_g068560 Hydrangea macrophylla HOM05D006143 ORTHO05D007587 2.6e-106 390.2 444 49.5
FAN16G0487 Fragaria x ananassa HOM05D006143 ORTHO05D007587 2.2e-105 387.1 469 49.0
FvH4_7g02070 Fragaria vesca HOM05D006143 ORTHO05D007587 4.9e-105 386.0 440 49.8
Gorai.011G031600 Gossypium raimondii HOM05D006143 ORTHO05D007587 4.1e-104 382.9 461 48.8
Gohir.D10G029700 Gossypium hirsutum HOM05D006143 ORTHO05D007587 9.2e-104 381.7 461 48.6
ClCG03G007960 Citrullus lanatus HOM05D006143 ORTHO05D007587 1.2e-103 381.3 460 48.7
FAN06G1438 Fragaria x ananassa HOM05D006143 ORTHO05D007587 1.6e-103 380.9 448 49.1
FAN21G2423 Fragaria x ananassa HOM05D006143 ORTHO05D007587 2.0e-103 380.6 440 50.2
TWI63G1355 Tripterygium wilfordii HOM05D006143 ORTHO05D007587 2.0e-103 380.6 446 48.7
Nn1g04309 Nelumbo nucifera HOM05D006143 ORTHO05D007587 2.3e-102 377.1 439 50.8
Atru.chr10.1746 Acer truncatum HOM05D006143 ORTHO05D007587 5.0e-102 375.9 444 49.5
FAN03G1069 Fragaria x ananassa HOM05D006143 ORTHO05D007587 6.6e-102 375.6 449 48.3
MELO3C002630.2 Cucumis melo HOM05D006143 ORTHO05D007587 3.6e-100 369.8 460 46.7
Haze_06321 Corylus avellana HOM05D006143 ORTHO05D007587 8.1e-100 368.6 453 47.7
Lalb_Chr16g0384181 Lupinus albus HOM05D006143 ORTHO05D007587 1.1e-99 368.2 450 45.8
DCAR_007976 Daucus carota HOM05D006143 ORTHO05D007587 1.9e-96 357.5 453 48.6
arahy.Tifrunner.gnm1.ann1.W3DLTW Arachis hypogaea HOM05D006143 ORTHO05D007587 3.2e-96 356.7 489 42.9
Phvul.003G056900 Phaseolus vulgaris HOM05D006143 ORTHO05D007587 4.6e-95 352.8 449 44.5
Cc02_g14290 Coffea canephora HOM05D006143 ORTHO05D007587 6.0e-95 352.4 447 46.1
Cpa.g.sc7.33 Carica papaya HOM05D006143 ORTHO05D007587 1.3e-94 351.3 461 46.9
arahy.Tifrunner.gnm1.ann1.VAEI8B Arachis hypogaea HOM05D006143 ORTHO05D007587 2.3e-94 350.5 494 42.3
Oeu045072.2 Olea europaea HOM05D006143 ORTHO05D007587 2.3e-94 350.5 470 44.5
Migut.M01078 Erythranthe guttata HOM05D006143 ORTHO05D007587 6.6e-94 349.0 450 46.9
Glyma.07G203300 Glycine max HOM05D006143 ORTHO05D007587 6.6e-94 349.0 447 44.3
Lsat_1_v5_gn_4_50941 Lactuca sativa HOM05D006143 ORTHO05D007587 3.3e-93 346.7 474 44.7
MBI07_g06435_MAGBIO Magnolia biondii HOM05D006143 ORTHO05D007587 5.6e-93 345.9 461 46.0
PGSC0003DMG400010721 Solanum tuberosum HOM05D006143 ORTHO05D007587 1.6e-92 344.4 450 45.8
TPR.G16154 Trifolium pratense HOM05D006143 ORTHO05D007587 6.2e-92 342.4 446 44.8
Lj4g0027541 Lotus japonicus HOM05D006143 ORTHO05D007587 8.1e-92 342.0 476 43.3
Ciclev10015477m.g Citrus clementina HOM05D006143 ORTHO05D007587 1.1e-91 341.7 396 49.0
Psat7g118360 Pisum sativum HOM05D006143 ORTHO05D007587 1.1e-91 341.7 449 43.7
Sc05g0007290 Simmondsia chinensis HOM05D006143 ORTHO05D007587 2.3e-91 340.5 467 45.2
Glyma.13G172400 Glycine max HOM05D006143 ORTHO05D007587 1.2e-90 338.2 473 42.1
Peaxi162Scf00875g00320 Petunia axillaris HOM05D006143 ORTHO05D007587 5.8e-90 335.9 473 43.3
PSO832G2207 Papaver somniferum HOM05D006143 ORTHO05D007587 7.6e-90 335.5 440 45.7
Aa31LG6G1190 Aethionema arabicum HOM05D006143 ORTHO05D007587 2.2e-89 334.0 445 45.8
Hund23878 Selenicereus undatus HOM05D006143 ORTHO05D007587 6.4e-89 332.4 458 45.0
Ca_26041_v3 Cicer arietinum L. HOM05D006143 ORTHO05D007587 1.4e-88 331.3 423 45.6
Sopen02g022240 Solanum pennellii HOM05D006143 ORTHO05D007587 1.9e-88 330.9 439 44.9
ECA234G2393 Erigeron canadensis HOM05D006143 ORTHO05D007587 7.1e-88 328.9 449 44.3
Gohir.A10G029200 Gossypium hirsutum HOM05D006143 ORTHO05D007587 7.1e-88 328.9 421 46.8
Medtr4g087975 Medicago truncatula HOM05D006143 ORTHO05D007587 9.2e-88 328.6 445 45.2
AUR62014918 Chenopodium quinoa HOM05D006143 ORTHO05D007587 4.6e-87 326.2 454 42.5
THA.LOC104798414 Tarenaya hassleriana HOM05D006143 ORTHO05D007587 4.6e-87 326.2 445 44.7
Aqoxy4G00545 Aquilegia oxysepala HOM05D006143 ORTHO05D007587 1.7e-86 324.3 445 44.3
HanXRQChr11g0327231 Helianthus annuus HOM05D006143 ORTHO05D007587 1.7e-86 324.3 450 42.9
TAR626G0253 Trochodendron aralioides HOM05D006143 ORTHO05D007587 2.3e-86 323.9 329 55.0
Solyc02g077320.4 Solanum lycopersicum HOM05D006143 ORTHO05D007587 3.9e-86 323.2 433 44.6
Sed0020086 Sechium edule HOM05D006143 ORTHO05D007587 1.9e-85 320.9 412 46.8
EL10Ac8g20474 Beta vulgaris HOM05D006143 ORTHO05D007587 3.3e-85 320.1 457 43.1
Medtr6g039570 Medicago truncatula HOM05D006143 ORTHO05D007587 7.3e-85 318.9 447 44.1
AUR62031125 Chenopodium quinoa HOM05D006143 ORTHO05D007587 2.1e-84 317.4 435 43.0
FvH4_3g08270 Fragaria vesca HOM05D006143 ORTHO05D007587 2.1e-84 317.4 338 52.7
Nitab4.5_0011727g0010 Nicotiana tabacum HOM05D006143 ORTHO05D007587 2.1e-84 317.4 453 43.7
PSO210G3197 Papaver somniferum HOM05D006143 ORTHO05D007587 6.2e-84 315.8 441 43.8
Sp7g15570 Schrenkiella parvula HOM05D006143 ORTHO05D007587 3.1e-83 313.5 445 42.5
Thhalv10025244m.g Eutrema salsugineum HOM05D006143 ORTHO05D007587 2.6e-82 310.5 444 41.7
CsaV3_1G012630 Cucumis sativus L. HOM05D006143 ORTHO05D007587 1.7e-81 307.8 345 50.1
BolC1t01214H Brassica oleracea HOM05D006143 ORTHO05D007587 1.9e-80 304.3 444 40.8
AT4G18470 Arabidopsis thaliana HOM05D006143 ORTHO05D007587 4.2e-80 303.1 458 41.0
Cfa000554 Carpinus fangiana HOM05D006143 ORTHO05D007587 7.1e-80 302.4 302 55.0
BcaNung05875 Brassica carinata HOM05D006143 ORTHO05D007587 9.3e-80 302.0 444 40.1
BcaC09g51506 Brassica carinata HOM05D006143 ORTHO05D007587 1.2e-79 301.6 444 40.5
C01p12400 Brassica napus HOM05D006143 ORTHO05D007587 1.6e-79 301.2 444 39.9
Nitab4.5_0000376g0080 Nicotiana tabacum HOM05D006143 ORTHO05D007587 3.5e-79 300.1 441 41.7
Ah.01g004290 Amaranthus hybridus HOM05D006143 ORTHO05D007587 6.0e-79 299.3 446 40.4
CARHR225290 Cardamine hirsuta HOM05D006143 ORTHO05D007587 1.0e-78 298.5 444 40.8
BraA01t00988Z Brassica rapa HOM05D006143 ORTHO05D007587 3.0e-78 297.0 444 39.6
AL7G35830 Arabidopsis lyrata HOM05D006143 ORTHO05D007587 8.7e-78 295.4 444 40.1
Carub.0007s2278 Capsella rubella HOM05D006143 ORTHO05D007587 1.9e-77 294.3 457 39.8
Os02g0312800 Oryza sativa ssp. japonica HOM05D006143 ORTHO05D007587 9.6e-77 292.0 440 41.6
ATR0602G028 Amborella trichopoda HOM05D006143 ORTHO05D007587 4.8e-76 289.7 446 41.9
SGA_v2.0_scaffold16G07658 Striga asiatica HOM05D006143 ORTHO05D007587 8.1e-76 288.9 461 39.3
Sabra11G0042500 Salix brachista HOM05D006143 ORTHO05D007587 1.5e-74 284.6 447 41.4
Actinidia39490 Actinidia chinensis HOM05D006143 ORTHO05D007587 2.0e-74 284.3 449 41.9
A01p10420 Brassica napus HOM05D006143 ORTHO05D007587 4.4e-74 283.1 469 37.5
Eucgr.E02653 Eucalyptus grandis HOM05D006143 ORTHO05D007587 9.9e-74 282.0 283 57.6
Zm00001eb206790 Zea mays HOM05D006143 ORTHO05D007587 2.8e-68 263.8 445 38.9
VMungo0251G1209 Vigna mungo HOM05D006143 ORTHO05D007587 4.0e-59 233.4 312 41.7
CDE02G0230 Ceratophyllum demersum HOM05D006143 ORTHO05D007587 9.3e-56 222.2 442 35.3
HPP92_003901 Vanilla planifolia HOM05D006143 ORTHO05D007587 6.3e-52 209.5 322 38.8
unitig_699.g19338 Utricularia gibba HOM05D006143 ORTHO05D007587 1.5e-45 188.3 439 30.8
Rhsim02G0153000 Rhododendron simsii HOM05D006143 ORTHO05D007587 3.1e-43 180.6 180 49.4
RcHm_v2.0_Chr3g0476981 Rosa chinensis HOM05D006143 ORTHO05D007587 1.6e-31 141.7 347 32.3
MD10G1285900 Malus domestica HOM05D006143 ORTHO05D007587 3.3e-29 134.0 225 37.3
arahy.Tifrunner.gnm1.ann1.74Q5DQ Arachis hypogaea HOM05D006143 ORTHO05D007587 3.1e-27 127.5 175 40.0
TPR.G16261 Trifolium pratense HOM05D006143 ORTHO05D007587 6.5e-25 119.8 194 40.2
arahy.Tifrunner.gnm1.ann1.VQL787 Arachis hypogaea HOM05D006143 ORTHO05D007587 2.3e-22 111.3 119 44.5
arahy.Tifrunner.gnm1.ann1.RYY8E4 Arachis hypogaea HOM05D006143 ORTHO05D007587 2.0e-21 108.2 119 43.7
arahy.Tifrunner.gnm1.ann1.Y1II92 Arachis hypogaea HOM05D006143 ORTHO05D007587 2.0e-21 108.2 119 43.7
SEGI_30740 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 1.1e-19 102.4 162 34.0
SEGI_37534 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 1.1e-19 102.4 162 34.0
Mapoly0071s0015 Marchantia polymorpha HOM05D006143 ORTHO05D007587 1.7e-17 95.1 474 25.9
VMungo0251G1903 Vigna mungo HOM05D006143 ORTHO05D007587 3.8e-17 94.0 132 43.9
SHI28510 Sapria himalayana HOM05D006143 ORTHO05D007587 5.0e-17 93.6 133 42.1
HPP92_003867 Vanilla planifolia HOM05D006143 ORTHO05D007587 2.5e-16 91.3 254 29.9
arahy.Tifrunner.gnm1.ann1.6ZT1I9 Arachis hypogaea HOM05D006143 ORTHO05D007587 5.5e-16 90.1 174 33.3
arahy.Tifrunner.gnm1.ann1.Y2C9I0 Arachis hypogaea HOM05D006143 ORTHO05D007587 1.6e-15 88.6 120 42.5
Pp3c13_1090 Physcomitrium patens HOM05D006143 ORTHO05D007587 1.4e-14 85.5 440 24.3
MD10G1285700 Malus domestica HOM05D006143 ORTHO05D007587 1.8e-14 85.1 74 52.7
Nn4g22609 Nelumbo nucifera HOM05D006143 ORTHO05D007587 2.0e-13 81.6 89 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2178 Anthoceros agrestis HOM05D006143 ORTHO05D007587 1.8e-11 75.1 415 26.3
SEGI_26564 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 5.0e-09 67.0 109 31.2
CSS0047646 Camellia sinensis var. sinensis HOM05D000493 ORTHO05D001638 1.6e-07 62.0 64 57.8
MD10G1285800 Malus domestica HOM05D006143 ORTHO05D007587 6.1e-07 60.1 55 54.5
HPP92_003900 Vanilla planifolia HOM05D006143 ORTHO05D007587 5.2e-06 57.0 106 38.7


User provided reference genes

Program Settings