Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 3003.0 1517 100.0
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1748.8 1506 60.0
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1728.0 1508 58.6
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1720.3 1511 58.6
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1701.8 1515 58.0
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1666.0 1538 56.2
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1658.3 1512 56.9
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1656.0 1512 56.7
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1649.4 1537 56.0
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1649.0 1513 56.6
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1637.1 1514 57.3
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1628.6 1459 56.8
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1622.8 1513 55.9
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1612.4 1548 56.3
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1600.1 1509 55.8
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1597.8 1513 55.5
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1587.0 1518 55.5
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1582.0 1519 55.3
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1581.6 1517 56.4
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1567.4 1517 54.9
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1567.0 1621 52.3
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1563.9 1511 55.3
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1555.4 1516 54.6
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1553.5 1514 54.5
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1550.8 1521 54.8
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1548.9 1511 54.5
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1545.8 1518 55.1
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1542.7 1508 53.8
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1533.1 1505 55.3
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1532.7 1513 54.4
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1531.5 1524 54.1
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1531.5 1524 54.1
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1530.8 1509 53.6
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1530.4 1509 53.2
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1528.1 1522 54.7
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1526.9 1510 52.8
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1526.1 1518 54.4
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1525.0 1513 54.0
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1523.1 1509 53.7
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1523.1 1533 52.3
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1521.1 1437 56.0
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1519.6 1513 54.0
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1513.0 1511 53.5
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1501.9 1517 53.9
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1500.0 1506 52.8
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1492.6 1506 52.2
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1469.9 1512 50.9
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1459.1 1513 51.9
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1455.3 1518 52.8
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1446.8 1521 50.6
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1444.1 1505 50.8
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1442.9 1148 62.7
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1441.8 1538 49.3
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1440.6 1504 50.1
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1439.1 1286 57.8
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1433.7 1525 51.1
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1430.6 1516 50.3
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1430.2 1520 50.1
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1412.1 1529 49.6
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1405.2 1200 60.6
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1401.3 1507 50.2
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1379.8 1512 49.4
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1363.2 1519 49.6
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1354.3 1511 49.4
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1349.7 1241 57.0
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1347.0 1517 49.5
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1346.6 1456 49.0
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1346.6 1522 48.6
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1346.3 1518 48.9
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1340.5 1516 49.0
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1336.6 1512 49.2
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1335.1 1526 49.2
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1330.1 1545 48.0
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1328.9 1516 48.7
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1325.1 1514 49.1
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1321.6 1548 47.9
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1317.0 1513 47.7
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1315.1 1761 42.1
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1313.9 1508 48.3
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1277.3 1531 47.6
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1270.4 1524 47.0
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1269.2 1506 45.7
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1263.4 1392 49.6
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1200.7 1092 57.1
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1187.9 1293 50.6
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1186.0 1516 43.7
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1180.6 1546 44.5
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1166.8 1555 43.7
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1146.3 1048 56.1
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1125.5 1132 52.9
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1107.4 1118 53.8
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1104.7 976 58.9
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.8e-250 870.5 1143 42.9
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 6.6e-232 808.9 1526 34.4
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.1e-231 808.1 1151 41.3
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 1.4e-229 801.2 1532 35.1
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 2.7e-217 760.4 1022 42.2
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.3e-216 758.1 1540 34.0
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 2.7e-201 707.2 583 62.4
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 9.3e-194 682.2 570 61.8
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 6.9e-189 666.0 987 40.0
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 1.3e-187 661.8 656 53.4
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.1e-186 658.7 1025 40.5
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 1.6e-185 654.8 1032 40.4
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 3.0e-184 650.6 1033 40.2
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 1.5e-183 648.3 1403 32.9
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 1.1e-178 632.1 571 57.6
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.4e-178 631.7 601 53.1
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.7e-167 593.2 608 53.6
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 1.7e-139 501.9 491 54.6
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.3e-136 491.5 573 49.2
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.0e-120 439.5 571 43.8
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.6e-116 425.6 560 43.2
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 7.3e-114 416.8 1083 31.3
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 6.0e-108 397.1 529 44.2
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 2.6e-95 355.1 505 41.4
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-95 354.8 1081 26.9
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 6.4e-86 323.9 442 42.8
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 9.0e-80 303.5 549 35.3
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 4.2e-77 294.7 377 46.2
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 6.7e-75 287.3 418 44.3
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 2.8e-73 282.0 340 47.1
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 2.4e-72 278.9 332 44.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 2.0e-71 275.8 836 27.9
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.8e-70 271.6 318 43.4
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 6.0e-68 264.2 318 46.2
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 2.3e-67 262.3 449 39.4
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 5.6e-66 257.7 380 40.8
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 5.6e-66 257.7 275 50.5
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 2.8e-65 255.4 212 61.8
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 2.6e-63 248.8 496 33.5
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.5e-58 232.3 221 54.3
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.2e-55 223.4 254 49.2
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.3e-54 219.9 359 37.9
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.2e-53 214.9 295 43.4
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.5e-50 206.5 194 54.6
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 9.1e-48 197.2 308 37.3
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 5.9e-47 194.5 281 43.4
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 1.0e-46 193.7 279 42.3
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 7.9e-44 184.1 192 51.6
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 2.0e-42 179.5 388 34.8
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 9.4e-37 160.6 206 45.1
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.7e-36 159.1 132 57.6
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 3.0e-35 155.6 193 47.7
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 3.9e-35 155.2 232 39.2
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 5.2e-35 154.8 122 62.3
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 1.2e-31 143.7 125 52.8
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 2.0e-31 142.9 189 45.0
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 6.5e-30 137.9 149 47.0
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 1.9e-29 136.3 114 60.5
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 5.5e-29 134.8 119 58.0
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 5.5e-29 134.8 118 53.4
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 4.7e-20 105.1 106 50.0
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-17 96.7 270 27.8
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 8.6e-14 84.3 95 49.5
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 4.2e-13 82.0 95 48.4
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 6.1e-12 78.2 273 25.6
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 6.3e-09 68.2 44 70.5
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 2.4e-08 66.2 190 30.5
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.6e-07 63.5 38 73.7
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 2.0e-07 63.2 55 45.5
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 7.8e-07 61.2 42 66.7
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 1.0e-06 60.8 44 68.2
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 2.3e-06 59.7 116 37.9


User provided reference genes

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