Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 5.7e-77 290.8 144 100.0
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 2.9e-44 182.2 157 67.5
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 1.3e-33 146.7 78 87.2
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 2.3e-33 146.0 78 87.2
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 3.0e-33 145.6 90 74.4
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 6.6e-33 144.4 78 84.6
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 4.3e-32 141.7 75 81.3
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.6e-31 139.8 90 73.3
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.6e-31 139.8 90 73.3
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.6e-31 139.8 90 73.3
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 2.1e-31 139.4 78 83.3
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 2.1e-31 139.4 104 67.3
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 3.6e-31 138.7 72 87.5
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 8.1e-31 137.5 84 73.8
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.4e-30 136.7 90 72.2
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 2.4e-30 136.0 129 56.6
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 2.4e-30 136.0 135 54.8
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 5.2e-30 134.8 135 54.1
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 5.2e-30 134.8 79 78.5
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 6.8e-30 134.4 75 82.7
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 6.8e-30 134.4 75 82.7
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 6.8e-30 134.4 75 82.7
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 6.8e-30 134.4 102 65.7
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 8.9e-30 134.0 85 67.1
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 8.9e-30 134.0 128 57.0
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 8.9e-30 134.0 72 80.6
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 1.2e-29 133.7 100 64.0
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 1.5e-29 133.3 146 51.4
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 1.5e-29 133.3 135 54.8
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 2.0e-29 132.9 75 81.3
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 2.0e-29 132.9 75 81.3
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 2.0e-29 132.9 75 81.3
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 2.6e-29 132.5 101 63.4
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 2.6e-29 132.5 74 77.0
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 4.4e-29 131.7 70 80.0
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 5.8e-29 131.3 126 56.3
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 7.6e-29 131.0 95 63.2
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 7.6e-29 131.0 72 79.2
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 9.9e-29 130.6 95 62.1
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 9.9e-29 130.6 107 58.9
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 1.7e-28 129.8 75 78.7
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 1.7e-28 129.8 119 57.1
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.7e-28 129.8 137 54.0
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 1.7e-28 129.8 76 76.3
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 2.2e-28 129.4 78 79.5
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 4.9e-28 128.3 125 56.0
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.4e-27 125.9 135 51.1
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.4e-27 125.9 135 51.1
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 3.2e-27 125.6 81 67.9
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 4.1e-27 125.2 79 70.9
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 5.4e-27 124.8 106 58.5
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 7.1e-27 124.4 78 71.8
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 7.1e-27 124.4 78 71.8
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 7.1e-27 124.4 78 71.8
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 6.0e-26 121.3 79 67.1
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 1.3e-25 120.2 104 54.8
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 2.3e-25 119.4 68 79.4
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 3.9e-25 118.6 91 58.2
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 1.2e-23 113.6 103 59.2
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 3.6e-23 112.1 59 84.7
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 2.4e-22 109.4 71 71.8
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 1.2e-21 107.1 78 64.1
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.2e-21 107.1 78 64.1
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 1.5e-21 106.7 82 63.4
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 2.0e-21 106.3 83 62.7
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 2.0e-21 106.3 83 62.7
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 2.0e-21 106.3 83 62.7
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 2.0e-21 106.3 83 62.7
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 2.0e-21 106.3 83 62.7
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 2.0e-21 106.3 70 72.9
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 2.0e-21 106.3 70 72.9
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 2.0e-21 106.3 70 72.9
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 2.0e-21 106.3 70 72.9
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 2.0e-21 106.3 70 72.9
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 2.0e-21 106.3 83 62.7
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 2.6e-21 105.9 83 61.4
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 2.6e-21 105.9 83 61.4
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 2.6e-21 105.9 83 61.4
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 3.4e-21 105.5 83 60.2
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 3.4e-21 105.5 83 60.2
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 3.4e-21 105.5 83 60.2
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 5.8e-21 104.8 83 61.4
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 2.2e-20 102.8 128 46.1
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.9e-20 101.7 76 61.8
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 6.4e-20 101.3 70 70.0
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 6.4e-20 101.3 77 62.3
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 1.1e-19 100.5 58 74.1
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 7.1e-19 97.8 139 48.2
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 2.7e-18 95.9 63 69.8
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 1.0e-17 94.0 75 64.0
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 1.7e-17 93.2 118 44.9
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.7e-17 93.2 118 45.8
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.7e-17 93.2 118 45.8
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.7e-17 93.2 56 76.8
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 3.0e-17 92.4 76 63.2
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.9e-17 92.0 64 65.6
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 8.7e-17 90.9 120 44.2
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 1.5e-16 90.1 63 65.1
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 4.8e-15 85.1 74 58.1
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 6.2e-15 84.7 80 62.5
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 4.0e-14 82.0 70 50.0
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 5.3e-14 81.6 56 66.1
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 7.6e-13 77.8 59 61.0
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 3.8e-12 75.5 58 63.8
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 3.8e-12 75.5 58 63.8
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.4e-11 73.6 80 56.2
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 5.4e-11 71.6 78 50.0
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 5.4e-11 71.6 60 48.3
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 3.5e-10 68.9 39 76.9
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 4.6e-10 68.6 78 48.7
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 1.0e-09 67.4 45 73.3
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.3e-09 67.0 80 51.2
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 2.3e-09 66.2 126 37.3
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 3.0e-09 65.9 47 68.1
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.0e-09 65.9 35 82.9
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.0e-09 65.9 35 82.9
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.0e-09 65.9 35 82.9
MELO3C027952.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.1e-08 63.9 61 62.3
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 1.9e-08 63.2 40 75.0
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 2.1e-07 59.7 44 70.5
COL.COLO4_02277 Corchorus olitorius HOM05D002824 ORTHO05D008771 4.8e-07 58.5 43 69.8
MELO3C030417.2 Cucumis melo HOM05D002824 ORTHO05D008771 6.2e-07 58.2 61 59.0
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.1e-06 57.4 39 69.2


User provided reference genes

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