Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 2.2e-152 542.7 385 100.0
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.4e-98 364.0 386 75.1
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 4.1e-98 362.5 384 72.1
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 4.6e-97 359.0 387 73.1
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 5.0e-96 355.5 385 71.9
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 5.6e-95 352.1 387 74.7
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 1.2e-94 350.9 413 60.0
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 2.1e-94 350.1 386 72.0
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 2.3e-93 346.7 389 58.4
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 5.2e-93 345.5 390 59.0
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 6.8e-93 345.1 386 73.8
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 9.9e-92 341.3 386 71.2
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 3.7e-91 339.3 386 71.0
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 1.9e-90 337.0 386 70.7
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.9e-90 337.0 385 70.9
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.2e-90 336.3 386 71.0
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 7.1e-90 335.1 386 71.5
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 9.2e-90 334.7 385 71.9
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 2.1e-89 333.6 389 70.4
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 4.6e-89 332.4 387 70.3
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 6.0e-89 332.0 385 71.2
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 7.8e-89 331.6 386 69.2
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.7e-88 330.5 385 61.0
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 3.9e-88 329.3 387 62.3
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 5.1e-88 328.9 387 68.0
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.1e-87 327.8 400 68.2
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 2.5e-87 326.6 385 71.2
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 4.3e-87 325.9 386 70.2
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 5.6e-87 325.5 385 72.2
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 7.3e-87 325.1 385 70.6
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 9.5e-87 324.7 386 67.6
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.6e-86 323.9 389 68.9
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.6e-86 323.9 389 68.9
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.6e-86 323.9 386 67.4
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.6e-86 323.9 385 70.9
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 3.6e-86 322.8 388 70.9
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 8.1e-86 321.6 386 67.6
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 8.1e-86 321.6 387 66.9
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 1.1e-85 321.2 387 67.2
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 4.0e-85 319.3 385 68.3
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 5.2e-85 318.9 385 70.6
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.5e-84 317.4 388 71.1
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 5.8e-84 315.5 386 70.7
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 7.6e-84 315.1 373 70.8
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 9.9e-84 314.7 388 71.6
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 2.2e-83 313.5 386 70.7
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.8e-83 312.8 386 67.6
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 3.2e-82 309.7 385 57.7
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 3.5e-81 306.2 385 68.8
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.0e-80 304.7 386 68.7
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 3.0e-80 303.1 375 66.7
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 6.6e-80 302.0 389 69.4
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 1.1e-79 301.2 389 66.6
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 3.3e-79 299.7 358 70.7
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.8e-77 293.9 392 67.3
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 3.1e-77 293.1 387 66.4
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 3.1e-77 293.1 373 65.4
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 4.4e-76 289.3 379 66.2
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 4.4e-76 289.3 388 68.3
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 4.4e-76 289.3 387 66.9
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 7.6e-76 288.5 355 67.9
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 3.8e-75 286.2 392 67.6
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.4e-74 284.3 389 64.3
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.9e-74 283.9 386 66.8
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.7e-73 280.0 354 67.5
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 1.1e-71 274.6 377 63.4
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 4.3e-71 272.7 359 71.3
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 4.3e-71 272.7 366 65.0
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 5.6e-71 272.3 374 63.6
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 7.3e-71 271.9 359 69.1
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 3.1e-69 266.5 398 61.3
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.7e-67 260.8 389 63.0
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 1.7e-67 260.8 379 62.5
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 4.9e-67 259.2 397 63.7
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 6.4e-67 258.8 389 63.0
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 1.4e-66 257.7 392 63.5
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 3.2e-66 256.5 326 70.2
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 6.0e-65 252.3 379 61.7
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 6.0e-65 252.3 498 37.3
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.8e-64 250.8 366 65.8
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 3.9e-64 249.6 386 62.2
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 6.7e-64 248.8 372 63.4
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 8.7e-64 248.4 371 64.7
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.9e-63 247.3 380 60.8
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.9e-63 247.3 380 60.8
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 1.9e-63 247.3 391 63.7
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 7.4e-63 245.4 380 60.8
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 2.8e-62 243.4 346 66.2
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 3.7e-62 243.0 392 42.3
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 4.8e-62 242.7 380 60.3
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 4.8e-62 242.7 345 55.9
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 3.1e-61 240.0 392 62.2
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 5.3e-61 239.2 289 72.7
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 2.0e-60 237.3 392 62.0
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 7.6e-60 235.3 391 61.4
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 7.6e-60 235.3 384 63.0
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 3.8e-59 233.0 382 60.2
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 9.3e-58 228.4 397 57.7
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 9.3e-58 228.4 389 58.9
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 2.3e-56 223.8 400 51.2
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.3e-54 218.0 394 51.8
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 6.2e-54 215.7 386 57.8
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 6.2e-54 215.7 329 64.4
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 2.4e-53 213.8 274 70.8
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 2.9e-51 206.8 340 65.9
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 7.1e-50 202.2 373 58.7
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.2e-49 201.4 393 56.5
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 1.6e-49 201.1 329 64.7
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 6.0e-49 199.1 321 66.0
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 8.7e-48 195.3 340 60.6
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 2.8e-46 190.3 175 61.1
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 8.2e-46 188.7 370 57.3
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.9e-42 177.6 390 52.1
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 7.2e-42 175.6 132 81.1
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 8.8e-40 168.7 301 60.1
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.5e-39 167.2 132 75.0
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.3e-38 164.9 132 73.5
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 2.2e-38 164.1 163 57.7
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 4.1e-37 159.8 256 64.8
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 3.4e-36 156.8 367 53.7
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 4.5e-36 156.4 379 50.4
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 2.5e-34 150.6 182 53.3
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 2.5e-34 150.6 253 64.4
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.3e-30 136.0 132 64.4
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 8.2e-30 135.6 167 47.9
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 3.4e-28 130.2 276 58.3
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 5.0e-27 126.3 272 58.8
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 6.1e-25 119.4 255 60.0
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 2.6e-23 114.0 114 62.3
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 4.4e-23 113.2 158 44.3
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.1e-17 94.4 97 50.5
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 6.1e-17 92.8 428 44.4
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 1.0e-16 92.0 234 53.0
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.2e-12 78.6 58 77.6
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 2.0e-12 77.8 56 80.4
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.0e-11 75.5 56 78.6
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 6.5e-11 72.8 84 69.0


User provided reference genes

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