Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 2.2e-166 589.0 307 100.0
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 2.1e-113 412.9 318 70.8
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 1.3e-107 393.7 260 75.8
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 2.3e-107 392.9 281 70.8
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 3.9e-107 392.1 307 68.1
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.1e-105 386.3 313 68.4
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.1e-104 384.0 310 66.1
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 1.4e-104 383.6 287 70.7
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 2.6e-103 379.4 239 77.8
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 1.3e-102 377.1 267 72.7
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.7e-102 376.7 299 66.9
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.7e-102 376.7 235 78.7
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 2.2e-102 376.3 283 69.3
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 3.2e-101 372.5 310 63.9
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 9.3e-101 370.9 291 67.4
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 9.3e-101 370.9 231 79.2
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 1.2e-100 370.5 273 71.1
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 2.1e-100 369.8 249 74.3
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 3.5e-100 369.0 245 74.7
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 6.0e-100 368.2 295 67.1
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 6.0e-100 368.2 309 66.0
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 7.8e-100 367.9 295 66.8
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.0e-99 367.5 243 75.3
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 1.0e-99 367.5 267 69.3
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 1.0e-99 367.5 234 76.1
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 1.3e-99 367.1 315 62.2
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.7e-99 366.7 244 75.0
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 1.7e-99 366.7 271 69.0
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 3.0e-99 365.9 309 62.8
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 3.0e-99 365.9 273 69.2
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 3.0e-99 365.9 230 76.5
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 6.6e-99 364.8 249 73.9
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 8.7e-99 364.4 271 73.1
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 8.7e-99 364.4 231 77.9
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 1.5e-98 363.6 249 72.7
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 1.5e-98 363.6 272 69.9
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 1.9e-98 363.2 322 63.0
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 3.3e-98 362.5 261 69.3
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 4.3e-98 362.1 245 74.7
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 4.3e-98 362.1 238 76.5
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 7.3e-98 361.3 244 72.1
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.6e-97 360.1 299 63.9
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 2.1e-97 359.8 263 71.9
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 3.6e-97 359.0 273 67.8
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 6.2e-97 358.2 243 73.7
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.1e-96 357.5 295 65.8
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.4e-96 356.3 254 70.9
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 2.4e-96 356.3 322 60.6
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 2.0e-95 353.2 232 78.0
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 2.6e-95 352.8 299 66.9
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 2.6e-95 352.8 287 65.9
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 1.7e-94 350.1 270 67.4
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 2.2e-94 349.7 309 63.1
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.1e-93 347.4 276 66.3
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 1.4e-93 347.1 304 61.2
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 1.9e-93 346.7 238 71.0
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.4e-93 346.3 232 74.6
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 3.2e-93 345.9 263 67.7
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 4.2e-93 345.5 268 65.3
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.2e-93 345.5 269 66.9
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 9.3e-93 344.4 268 64.9
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 1.2e-92 344.0 232 72.0
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 1.2e-92 344.0 237 71.7
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 1.2e-92 344.0 243 71.6
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 2.7e-92 342.8 310 59.0
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 2.7e-92 342.8 246 68.7
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 4.6e-92 342.0 276 64.9
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 6.0e-92 341.7 318 57.2
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 7.9e-92 341.3 323 57.0
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 1.0e-91 340.9 249 68.7
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 1.0e-91 340.9 276 65.9
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 1.3e-91 340.5 280 62.9
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.3e-91 340.5 300 61.7
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 3.0e-91 339.3 314 58.3
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 5.1e-91 338.6 305 60.0
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 5.1e-91 338.6 235 71.1
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 5.1e-91 338.6 238 70.6
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 8.7e-91 337.8 278 63.7
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 2.5e-90 336.3 290 61.7
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 5.6e-90 335.1 236 72.9
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 7.4e-90 334.7 316 57.0
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 1.6e-89 333.6 246 68.3
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 2.8e-89 332.8 284 62.7
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 6.2e-89 331.6 252 65.5
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.8e-88 330.1 244 70.1
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 4.0e-88 328.9 233 71.7
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 6.9e-88 328.2 241 68.9
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.2e-87 327.4 266 64.7
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 2.6e-87 326.2 236 69.5
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 9.9e-87 324.3 222 72.5
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 6.4e-86 321.6 269 64.3
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.8e-83 313.5 218 70.6
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 3.9e-83 312.4 270 60.7
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.6e-81 307.0 244 63.5
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.8e-81 306.2 238 63.0
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 1.4e-80 303.9 273 59.0
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 2.0e-79 300.1 255 63.5
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 7.6e-79 298.1 214 69.2
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 3.2e-77 292.7 209 67.9
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.0e-75 287.7 231 64.1
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 2.0e-71 273.5 275 55.3
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 2.6e-71 273.1 248 58.5
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 5.5e-69 265.4 243 56.0
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 1.2e-68 264.2 190 71.6
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 2.7e-68 263.1 218 59.6
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 4.6e-68 262.3 231 60.6
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 7.4e-66 255.0 192 66.7
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 7.4e-66 255.0 229 59.8
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 7.4e-66 255.0 192 66.7
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 4.8e-65 252.3 204 63.2
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 6.9e-64 248.4 208 58.7
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 9.1e-64 248.1 216 56.9
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 5.9e-63 245.4 249 51.8
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.4e-61 240.7 216 56.0
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 4.2e-61 239.2 210 61.9
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 6.1e-60 235.3 187 66.3
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 8.8e-59 231.5 163 71.8
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.7e-57 226.1 167 68.3
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.1e-56 223.0 194 59.8
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 1.2e-55 221.1 312 46.2
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 2.6e-55 219.9 205 57.1
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.0e-40 168.7 118 72.9
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.9e-37 160.6 204 44.6
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.2e-37 159.5 186 49.5
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 1.5e-34 151.0 215 40.0
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 3.8e-30 136.3 245 33.5
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 2.3e-27 127.1 112 58.0
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.9e-23 112.5 82 65.9
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 1.6e-20 104.4 56 85.7
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 2.6e-18 97.1 70 62.9
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 5.0e-14 82.8 81 58.0
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 2.5e-13 80.5 47 74.5
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 7.3e-13 79.0 52 71.2
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 1.2e-12 78.2 78 55.1
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 1.8e-11 74.3 48 77.1
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 5.8e-10 69.3 45 75.6
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 3.7e-09 66.6 70 54.3
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 1.1e-08 65.1 36 80.6
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.7e-07 60.5 48 58.3


User provided reference genes

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