Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3229 Punica granatum HOM05D005549 ORTHO05D006771 6.0e-197 690.6 350 100.0
Eucgr.H00383 Eucalyptus grandis HOM05D005549 ORTHO05D006771 4.8e-138 495.0 351 71.5
Atru.chr9.2502 Acer truncatum HOM05D005549 ORTHO05D006771 3.5e-136 488.8 348 65.8
Actinidia19108 Actinidia chinensis HOM05D005549 ORTHO05D006771 1.3e-135 486.9 357 64.7
Dinv38568 Davidia involucrata HOM05D005549 ORTHO05D006771 5.0e-135 485.0 348 63.8
Manes.06G106600 Manihot esculenta HOM05D005549 ORTHO05D006771 2.5e-134 482.6 344 65.7
vmacro16625 Vaccinium macrocarpon HOM05D005549 ORTHO05D006771 4.7e-133 478.4 357 63.6
Haze_07531 Corylus avellana HOM05D005549 ORTHO05D006771 1.4e-132 476.9 349 63.9
Prupe.5G171000 Prunus persica HOM05D005549 ORTHO05D006771 5.2e-132 474.9 346 64.7
TWI14G0382 Tripterygium wilfordii HOM05D005549 ORTHO05D006771 5.2e-132 474.9 347 64.0
QL10p009538 Quercus lobata HOM05D005549 ORTHO05D006771 8.9e-132 474.2 350 64.0
Potri.014G000900 Populus trichocarpa HOM05D005549 ORTHO05D006771 4.9e-130 468.4 348 63.8
Ciclev10020953m.g Citrus clementina HOM05D005549 ORTHO05D006771 8.3e-130 467.6 347 62.5
Rhsim12G0166100 Rhododendron simsii HOM05D005549 ORTHO05D006771 8.3e-130 467.6 351 64.1
TAR622G1114 Trochodendron aralioides HOM05D005549 ORTHO05D006771 8.3e-130 467.6 352 61.1
Sabra14G0003300 Salix brachista HOM05D005549 ORTHO05D006771 1.4e-129 466.8 348 63.2
Cc04_g12210 Coffea canephora HOM05D005549 ORTHO05D006771 7.0e-129 464.5 349 61.0
PGSC0003DMG400028373 Solanum tuberosum HOM05D005549 ORTHO05D006771 2.0e-128 463.0 347 62.8
Thecc.03G015300 Theobroma cacao HOM05D005549 ORTHO05D006771 2.0e-128 463.0 349 63.0
Duzib205G0052 Durio zibethinus HOM05D005549 ORTHO05D006771 2.7e-128 462.6 349 62.5
COL.COLO4_30080 Corchorus olitorius HOM05D005549 ORTHO05D006771 3.5e-128 462.2 349 67.6
Sopen05g007130 Solanum pennellii HOM05D005549 ORTHO05D006771 4.5e-128 461.8 347 62.0
CiPaw.11G024000 Carya illinoinensis HOM05D005549 ORTHO05D006771 1.7e-127 459.9 347 62.2
Peaxi162Scf00075g00159 Petunia axillaris HOM05D005549 ORTHO05D006771 5.0e-127 458.4 348 60.1
FAN08G3612 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.1e-126 457.2 348 62.1
MD06G1171600 Malus domestica HOM05D005549 ORTHO05D006771 2.5e-126 456.1 348 61.8
Sopen05g007150 Solanum pennellii HOM05D005549 ORTHO05D006771 9.5e-126 454.1 349 60.5
Aqoxy3G02864 Aquilegia oxysepala HOM05D005549 ORTHO05D006771 1.6e-125 453.4 345 62.9
arahy.Tifrunner.gnm1.ann1.386HL4 Arachis hypogaea HOM05D005549 ORTHO05D006771 2.1e-125 453.0 353 64.6
Sc12g0005230 Simmondsia chinensis HOM05D005549 ORTHO05D006771 4.7e-125 451.8 347 64.6
Gohir.A09G171200 Gossypium hirsutum HOM05D005549 ORTHO05D006771 6.1e-125 451.4 348 61.2
Gorai.006G188700 Gossypium raimondii HOM05D005549 ORTHO05D006771 6.1e-125 451.4 348 61.2
Hma1.2p1_0046F.1_g026660 Hydrangea macrophylla HOM05D005549 ORTHO05D006771 1.0e-124 450.7 400 54.8
FvH4_5g05540 Fragaria vesca HOM05D005549 ORTHO05D006771 1.4e-124 450.3 348 60.9
FAN18G0652 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.4e-124 450.3 348 60.9
arahy.Tifrunner.gnm1.ann1.7VTX70 Arachis hypogaea HOM05D005549 ORTHO05D006771 2.3e-124 449.5 353 64.0
FAN18G1717 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.5e-123 446.8 348 60.6
RcHm_v2.0_Chr7g0193241 Rosa chinensis HOM05D005549 ORTHO05D006771 3.4e-123 445.7 348 61.5
ECA232G3151 Erigeron canadensis HOM05D005549 ORTHO05D006771 4.4e-123 445.3 349 65.3
Gohir.D09G166900 Gossypium hirsutum HOM05D005549 ORTHO05D006771 5.8e-123 444.9 348 60.6
Lalb_Chr04g0247841 Lupinus albus HOM05D005549 ORTHO05D006771 2.2e-122 443.0 349 64.2
LjContig00081g0017630 Lotus japonicus HOM05D005549 ORTHO05D006771 3.7e-122 442.2 348 63.8
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 3.7e-122 442.2 316 72.5
TPR.G8611 Trifolium pratense HOM05D005549 ORTHO05D006771 3.2e-121 439.1 348 63.8
Glyma.09G077900 Glycine max HOM05D005549 ORTHO05D006771 4.1e-121 438.7 348 64.4
Medtr5g096040 Medicago truncatula HOM05D005549 ORTHO05D006771 4.1e-121 438.7 348 62.9
Glyma.15G218700 Glycine max HOM05D005549 ORTHO05D006771 5.4e-121 438.3 347 64.6
CsaV3_1G001440 Cucumis sativus L. HOM05D005549 ORTHO05D006771 7.0e-121 438.0 351 65.2
Nn4g25809 Nelumbo nucifera HOM05D005549 ORTHO05D006771 9.2e-121 437.6 349 57.9
MSTRG.26261 Avicennia marina HOM05D005549 ORTHO05D006771 2.0e-120 436.4 352 60.5
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 3.5e-120 435.6 345 64.3
Lj3C19G0 Lonicera japonica HOM05D005549 ORTHO05D006771 4.6e-120 435.3 348 63.8
DCAR_016476 Daucus carota HOM05D005549 ORTHO05D006771 1.3e-119 433.7 352 63.4
CANSAT25G1426 Cannabis sativa HOM05D005549 ORTHO05D006771 1.7e-119 433.3 348 63.5
Aa31LG11G650 Aethionema arabicum HOM05D005549 ORTHO05D006771 3.0e-119 432.6 352 57.4
EL10Ac5g10725 Beta vulgaris HOM05D005549 ORTHO05D006771 3.9e-119 432.2 351 59.8
Ca_06401_v3 Cicer arietinum L. HOM05D005549 ORTHO05D006771 1.1e-118 430.6 348 61.5
Peaxi162Scf00141g00210 Petunia axillaris HOM05D005549 ORTHO05D006771 2.5e-118 429.5 348 58.9
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 7.3e-118 427.9 345 59.4
Psat2g007040 Pisum sativum HOM05D005549 ORTHO05D006771 7.3e-118 427.9 348 62.4
PSO478G4565 Papaver somniferum HOM05D005549 ORTHO05D006771 1.2e-117 427.2 348 61.5
Migut.K00304 Erythranthe guttata HOM05D005549 ORTHO05D006771 2.1e-117 426.4 350 58.9
MBI16_g05472_MAGBIO Magnolia biondii HOM05D005549 ORTHO05D006771 8.0e-117 424.5 347 56.2
VMungo1127G1558 Vigna mungo HOM05D005549 ORTHO05D006771 1.4e-116 423.7 348 61.8
CARHR276820 Cardamine hirsuta HOM05D005549 ORTHO05D006771 1.8e-116 423.3 349 57.6
Ah.02g110600 Amaranthus hybridus HOM05D005549 ORTHO05D006771 2.3e-116 422.9 351 62.7
Thhalv10004522m.g Eutrema salsugineum HOM05D005549 ORTHO05D006771 2.3e-116 422.9 347 59.4
Hund09451 Selenicereus undatus HOM05D005549 ORTHO05D006771 2.3e-116 422.9 353 58.1
ClCG06G017070 Citrullus lanatus HOM05D005549 ORTHO05D006771 3.1e-116 422.5 351 64.7
AUR62008189 Chenopodium quinoa HOM05D005549 ORTHO05D006771 6.8e-116 421.4 346 58.4
AL8G40040 Arabidopsis lyrata HOM05D005549 ORTHO05D006771 8.9e-116 421.0 347 63.4
Oeu024700.1 Olea europaea HOM05D005549 ORTHO05D006771 2.6e-115 419.5 350 60.9
Carub.0008s2372 Capsella rubella HOM05D005549 ORTHO05D006771 3.7e-114 415.6 347 57.6
Sp2g26140 Schrenkiella parvula HOM05D005549 ORTHO05D006771 4.9e-114 415.2 347 57.9
FAN13G1520 Fragaria x ananassa HOM05D005549 ORTHO05D006771 6.4e-114 414.8 348 58.0
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 6.4e-114 414.8 340 59.1
Phvul.011G182066 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 4.1e-113 412.1 347 62.0
BraA06t25926Z Brassica rapa HOM05D005549 ORTHO05D006771 5.4e-113 411.8 346 63.0
MELO3C017092.2 Cucumis melo HOM05D005549 ORTHO05D006771 7.0e-113 411.4 351 63.0
Phvul.011G182000 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 9.2e-113 411.0 347 61.7
Eucgr.C01244 Eucalyptus grandis HOM05D005549 ORTHO05D006771 4.6e-112 408.7 350 59.1
Sed0023293 Sechium edule HOM05D005549 ORTHO05D006771 4.6e-112 408.7 348 63.8
Lsat_1_v5_gn_4_75780 Lactuca sativa HOM05D005549 ORTHO05D006771 1.0e-111 407.5 350 61.4
AT5G63010 Arabidopsis thaliana HOM05D005549 ORTHO05D006771 2.3e-111 406.4 348 58.0
BcaC01g02548 Brassica carinata HOM05D005549 ORTHO05D006771 2.5e-110 402.9 346 62.4
C03p63600 Brassica napus HOM05D005549 ORTHO05D006771 2.5e-110 402.9 346 62.4
BolC3t18618H Brassica oleracea HOM05D005549 ORTHO05D006771 2.5e-110 402.9 346 62.4
THA.LOC104818503 Tarenaya hassleriana HOM05D005549 ORTHO05D006771 3.3e-110 402.5 329 64.4
FAN04G2905 Fragaria x ananassa HOM05D005549 ORTHO05D006771 7.3e-110 401.4 350 56.6
unitig_37.g12682 Utricularia gibba HOM05D005549 ORTHO05D006771 2.1e-109 399.8 347 55.9
BcaB02g09715 Brassica carinata HOM05D005549 ORTHO05D006771 2.8e-109 399.4 348 61.8
A06p29790 Brassica napus HOM05D005549 ORTHO05D006771 3.1e-108 396.0 346 61.8
Os04g0507900 Oryza sativa ssp. japonica HOM05D005549 ORTHO05D006771 1.3e-103 380.6 351 52.7
SGA_v2.0_scaffold293G47425 Striga asiatica HOM05D005549 ORTHO05D006771 2.5e-102 376.3 350 57.7
Zm00001eb426250 Zea mays HOM05D005549 ORTHO05D006771 5.6e-102 375.2 349 51.6
SHI17110 Sapria himalayana HOM05D005549 ORTHO05D006771 6.2e-101 371.7 345 52.8
HPP92_021890 Vanilla planifolia HOM05D005549 ORTHO05D006771 3.8e-98 362.5 350 55.7
HanXRQChr09g0272091 Helianthus annuus HOM05D005549 ORTHO05D006771 1.1e-86 324.3 277 62.1
Cpa.g.c31519.1 Carica papaya HOM05D005549 ORTHO05D006771 1.6e-85 320.5 241 61.4
CDE02G3271 Ceratophyllum demersum HOM05D005549 ORTHO05D006771 4.8e-85 318.9 345 47.0
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 4.6e-80 302.4 217 68.7
Solyc05g012300.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 6.0e-80 302.0 221 61.5
Solyc05g012320.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 5.1e-79 298.9 223 60.1
Atru.chr9.2510 Acer truncatum HOM05D005549 ORTHO05D006771 5.6e-78 295.4 208 64.4
ECA232G2898 Erigeron canadensis HOM05D005549 ORTHO05D006771 9.6e-78 294.7 223 68.6
Glyma.08G230900 Glycine max HOM05D005549 ORTHO05D006771 1.6e-77 293.9 222 67.6
arahy.Tifrunner.gnm1.ann1.8228C9 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.8e-76 290.4 209 68.9
arahy.Tifrunner.gnm1.ann1.DCL1V8 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.8e-76 290.4 209 68.9
Potri.012G087300 Populus trichocarpa HOM05D005549 ORTHO05D006771 2.6e-75 286.6 223 60.1
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 7.6e-75 285.0 349 40.7
Mapoly0027s0008 Marchantia polymorpha HOM05D005549 ORTHO05D006771 3.0e-71 273.1 389 38.3
CSS0043757 Camellia sinensis var. sinensis HOM05D005549 ORTHO05D006771 1.5e-70 270.8 225 59.6
AUR62030941 Chenopodium quinoa HOM05D005549 ORTHO05D006771 5.6e-70 268.9 220 58.6
SMO367G1205 Selaginella moellendorffii HOM05D005549 ORTHO05D006771 3.4e-67 259.6 345 41.2
Peaxi162Scf00141g10027 Petunia axillaris HOM05D005549 ORTHO05D006771 1.7e-66 257.3 185 62.2
ATR0807G008 Amborella trichopoda HOM05D005549 ORTHO05D006771 2.8e-61 240.0 221 47.5
AagrBONN_evm.TU.Sc2ySwM_228.3282 Anthoceros agrestis HOM05D005549 ORTHO05D006771 3.7e-61 239.6 379 36.1
HanXRQChr16g0506951 Helianthus annuus HOM05D005549 ORTHO05D006771 1.9e-57 227.3 190 57.4
HanXRQChr04g0107691 Helianthus annuus HOM05D005549 ORTHO05D006771 2.3e-55 220.3 182 67.0
Gorai.001G151900 Gossypium raimondii HOM05D005549 ORTHO05D006771 2.2e-53 213.8 190 55.3
Eucgr.H00387 Eucalyptus grandis HOM05D005549 ORTHO05D006771 6.3e-53 212.2 204 52.0
Gohir.D07G139801 Gossypium hirsutum HOM05D005549 ORTHO05D006771 9.1e-52 208.4 190 54.2
MD14G1177100 Malus domestica HOM05D005549 ORTHO05D006771 2.2e-50 203.8 224 48.2
MD06G1171300 Malus domestica HOM05D005549 ORTHO05D006771 2.5e-49 200.3 315 37.1
CBR_g24288 Chara braunii HOM05D005549 ORTHO05D006771 1.7e-45 187.6 511 28.0
Atru.chr9.2511 Acer truncatum HOM05D005549 ORTHO05D006771 1.7e-37 161.0 119 63.0
Cre10.g434300 Chlamydomonas reinhardtii HOM05D005549 ORTHO05D006771 1.0e-34 151.8 304 35.9
Cpa.g.c31519.2 Carica papaya HOM05D005549 ORTHO05D006771 8.5e-26 122.1 82 65.9
TPR.G8752 Trifolium pratense HOM05D005549 ORTHO05D006771 1.1e-25 121.7 84 61.9
MCO16G545 Micromonas commoda HOM05D005549 ORTHO05D006771 1.5e-25 121.3 351 27.1
ATR0807G036 Amborella trichopoda HOM05D005549 ORTHO05D006771 3.2e-25 120.2 109 54.1
Sabra12G0062500 Salix brachista HOM05D005549 ORTHO05D006771 3.0e-23 113.6 97 61.9
Gohir.D12G085501 Gossypium hirsutum HOM05D005549 ORTHO05D006771 8.8e-23 112.1 142 43.7
PRCOL_00001377 Prasinoderma coloniale HOM05D005549 ORTHO05D006771 1.4e-20 104.8 349 26.9
MD14G1177000 Malus domestica HOM05D005549 ORTHO05D006771 9.5e-17 92.0 67 59.7
Nitab4.5_0003499g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.6e-14 84.0 99 48.5
Lj5C126T17 Lonicera japonica HOM05D005549 ORTHO05D006771 4.4e-14 83.2 99 43.4
Sed0004316 Sechium edule HOM05D000684 ORTHO05D000688 4.0e-07 60.1 208 24.0
Lalb_Chr17g0347231 Lupinus albus HOM05D000684 ORTHO05D000688 1.2e-06 58.5 235 24.3
MD10G1328500 Malus domestica HOM05D000684 ORTHO05D000688 2.6e-06 57.4 184 26.6
AT2G32950 Arabidopsis thaliana HOM05D000684 ORTHO05D000688 3.4e-06 57.0 208 23.1
CsaV3_6G015450 Cucumis sativus L. HOM05D000684 ORTHO05D000688 4.4e-06 56.6 228 23.2
AL4G28470 Arabidopsis lyrata HOM05D000684 ORTHO05D000688 5.8e-06 56.2 208 23.1
BcaB02g10508 Brassica carinata HOM05D000684 ORTHO05D000688 5.8e-06 56.2 265 22.6
A05p12680 Brassica napus HOM05D000684 ORTHO05D000688 5.8e-06 56.2 265 22.6
BraA05t20206Z Brassica rapa HOM05D000684 ORTHO05D000688 5.8e-06 56.2 265 22.6
Thhalv10016348m.g Eutrema salsugineum HOM05D000684 ORTHO05D000688 7.5e-06 55.8 259 22.0
THA.LOC104801011 Tarenaya hassleriana HOM05D000684 ORTHO05D000688 7.5e-06 55.8 208 23.6
Aa31LG5G4610 Aethionema arabicum HOM05D000684 ORTHO05D000688 9.8e-06 55.5 208 23.1
arahy.Tifrunner.gnm1.ann1.NA6SJF Arachis hypogaea HOM05D000684 ORTHO05D000688 9.8e-06 55.5 218 23.4
arahy.Tifrunner.gnm1.ann1.V708II Arachis hypogaea HOM05D000684 ORTHO05D000688 9.8e-06 55.5 208 24.0
ClCG02G018100 Citrullus lanatus HOM05D000684 ORTHO05D000688 9.8e-06 55.5 208 23.1
FvH4_3g01260 Fragaria vesca HOM05D000684 ORTHO05D000688 9.8e-06 55.5 258 22.5
Sp4g15310 Schrenkiella parvula HOM05D000684 ORTHO05D000688 9.8e-06 55.5 208 23.1


User provided reference genes

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