Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 2447.2 1281 100.0
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1484.9 1360 61.5
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1474.5 1363 61.0
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1471.4 1366 60.7
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1468.4 1376 60.5
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1464.9 1375 60.6
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1452.6 1358 59.9
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1452.6 1370 59.9
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1449.5 1367 59.6
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1440.2 1346 60.0
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1431.0 1366 59.5
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1430.6 1356 59.5
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1430.2 1347 59.2
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1427.9 1365 58.6
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1427.9 1365 58.5
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1426.4 1365 58.6
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1425.6 1351 59.4
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1412.9 1307 60.3
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1410.6 1357 59.0
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1404.8 1356 58.6
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1396.7 1342 58.9
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1392.1 1290 60.5
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1389.8 1338 58.8
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1387.5 1338 58.8
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1385.2 1355 58.7
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1384.0 1349 58.6
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1383.6 1359 58.1
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1382.9 1365 57.4
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1378.6 1363 56.7
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1378.2 1293 60.2
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1374.8 1379 56.7
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1372.5 1373 57.2
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1363.2 1364 56.8
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1360.1 1356 57.4
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1357.8 1379 57.1
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1352.4 1338 58.2
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1352.0 1324 58.4
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1351.7 1351 56.8
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1351.3 1360 56.2
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1350.5 1360 56.3
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1345.9 1391 56.5
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1343.9 1341 57.4
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1337.4 1404 55.9
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1336.2 1323 57.7
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1335.9 1359 57.0
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1334.3 1380 55.4
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1332.4 1334 57.2
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1327.4 1405 55.1
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1325.8 1336 57.4
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1325.8 1326 57.7
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1325.1 1339 57.3
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1323.9 1317 57.9
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1323.9 1337 57.1
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1323.1 1339 57.6
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1322.0 1362 55.7
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1322.0 1333 57.1
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1321.6 1328 57.1
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1318.1 1354 55.9
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1314.3 1368 55.4
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1309.7 1328 56.9
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1307.7 1355 55.7
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1307.4 1366 55.4
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1307.0 1223 58.8
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1305.8 1329 57.4
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1303.9 1336 56.6
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1303.9 1210 60.2
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1301.2 1355 55.4
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1297.3 1349 55.4
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1297.0 1377 54.2
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1294.6 1337 56.4
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1293.1 1373 53.9
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1291.6 1345 55.2
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1285.8 1340 55.9
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1283.5 1368 54.9
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1278.8 1378 53.3
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1276.2 1337 55.3
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1275.4 1351 54.5
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1271.5 1351 54.3
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1269.2 1301 55.4
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1236.9 1219 57.1
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1234.9 1211 57.3
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1233.0 1399 52.4
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1227.2 1252 56.8
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1212.6 1304 55.2
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1207.6 1361 52.8
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1196.4 1366 51.2
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1172.5 1158 57.9
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1171.0 1286 54.0
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1164.1 1169 57.4
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1156.7 1075 60.7
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1142.1 1387 50.5
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1133.6 1355 50.6
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1123.2 1072 58.0
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1120.1 1332 51.7
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1082.8 1350 49.5
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 4.9e-305 1051.6 1060 56.7
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 5.4e-304 1048.1 1377 45.8
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 3.4e-298 1028.9 1293 47.7
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 7.6e-298 1027.7 1178 51.4
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 5.4e-296 1021.5 1318 47.9
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 5.8e-290 1001.5 1338 47.2
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 3.9e-286 988.8 988 56.7
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 5.5e-272 941.8 954 55.9
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 3.0e-262 909.4 934 55.6
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.3e-260 904.0 755 64.1
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 9.4e-256 887.9 1139 49.8
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.5e-245 854.0 1014 49.8
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.0e-238 829.7 693 63.8
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 8.3e-228 795.0 1434 38.8
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 2.3e-217 760.4 835 53.8
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 3.0e-217 760.0 1103 43.3
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.9e-209 733.0 816 52.5
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.5e-208 731.1 1053 46.3
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 8.1e-207 725.3 761 53.6
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 3.9e-201 706.4 1401 36.7
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.7e-164 584.7 506 64.0
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.1e-150 538.9 1277 32.7
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 1.8e-150 538.1 1579 29.9
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 9.1e-150 535.8 623 50.2
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 9.1e-150 535.8 462 64.1
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 8.5e-132 476.1 410 64.9
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 5.0e-124 450.3 413 61.7
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.4e-102 379.0 286 67.5
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 9.5e-99 366.3 345 60.6
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.1e-94 352.8 306 61.1
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.3e-91 340.1 351 57.5
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 1.8e-81 308.9 1439 25.4
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 3.0e-68 265.0 278 57.2
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 1.9e-62 245.7 415 42.7
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 1.9e-62 245.7 379 39.1
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 1.4e-46 193.0 567 32.5
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 2.5e-43 182.2 230 48.3
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 4.1e-41 174.9 159 57.2
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 1.3e-34 153.3 106 72.6
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.3e-34 153.3 148 61.5
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 2.4e-33 149.1 231 38.1
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 5.0e-31 141.4 115 63.5
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 7.2e-30 137.5 82 82.9
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 4.4e-27 128.3 114 59.6
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 3.2e-22 112.1 88 65.9
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 3.0e-20 105.5 115 47.8
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.2e-12 78.2 141 42.6
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 8.8e-12 77.4 82 56.1
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 8.8e-12 77.4 82 56.1
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 9.8e-11 73.9 89 46.1
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 6.5e-07 61.2 69 55.1
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 6.5e-07 61.2 60 60.0
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 7.2e-06 57.8 48 60.4


User provided reference genes

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