Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 2382.1 1190 100.0
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1552.3 1182 66.4
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1476.1 1180 63.3
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1470.3 1184 62.8
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1469.9 1172 62.8
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1468.8 1181 62.2
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1466.8 1179 62.5
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1461.8 1179 63.1
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1457.6 1179 62.1
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1454.9 1182 61.7
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1453.0 1137 64.6
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1451.0 1183 62.0
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1445.3 1398 54.5
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1429.1 1181 60.2
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1424.8 1179 60.0
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1419.8 1182 60.3
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1419.1 1183 60.4
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1417.9 1191 60.5
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1416.0 1180 60.8
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1402.5 1183 60.9
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1399.4 1185 60.6
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1388.2 1221 57.3
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1381.7 1175 60.7
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1381.7 1182 58.5
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1377.1 1185 58.9
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1375.9 1185 58.9
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1375.9 1187 59.0
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1374.8 1182 58.6
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1370.9 1185 58.8
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1370.5 1184 59.0
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1366.3 1160 58.9
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1357.8 1179 57.6
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1354.3 1176 57.7
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1354.3 1187 58.5
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1349.0 1193 58.7
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1347.4 1172 58.4
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1337.8 1222 57.2
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1336.2 1172 57.9
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1336.2 1185 57.9
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1334.7 1176 58.0
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1330.5 1176 57.8
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1330.1 1177 58.0
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1327.8 1180 57.0
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1324.3 1174 58.0
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1319.7 1177 57.9
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1315.8 1172 57.0
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1310.4 1180 56.9
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1296.2 1173 56.7
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1292.3 1172 56.2
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1290.4 1182 56.4
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1290.4 1182 56.3
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1283.5 1393 51.1
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1281.2 1182 55.8
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1279.6 1182 55.9
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1278.1 1170 57.4
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1270.4 1172 55.5
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1267.3 1185 56.3
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1266.1 1178 56.3
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1265.8 1172 56.0
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1263.8 1179 55.5
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1258.8 1179 54.5
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1258.4 1035 61.6
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1258.4 1187 54.4
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1258.4 1178 56.4
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1258.0 1214 54.9
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1245.0 1180 54.9
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1238.8 1051 58.7
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1231.5 1188 53.5
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1228.0 1166 54.5
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1227.6 1181 53.1
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1225.3 1180 54.2
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1221.5 1062 58.3
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1217.2 1183 54.0
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1181.4 1178 53.3
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1177.2 1172 52.8
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1162.9 1132 53.9
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1157.5 1179 51.7
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1154.4 1179 51.3
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 0.0e+00 1108.2 1192 50.0
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 0.0e+00 1102.8 1194 49.6
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 0.0e+00 1089.3 1116 51.3
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 5.4e-306 1054.7 1118 50.8
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 6.2e-302 1041.2 1125 49.7
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 1.0e-296 1023.8 1180 46.6
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 6.6e-296 1021.1 1217 46.5
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 4.0e-293 1011.9 1165 48.6
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 2.4e-277 959.5 845 58.6
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 4.0e-269 932.2 775 62.5
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 4.1e-237 825.9 714 59.1
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 1.7e-235 820.5 1156 42.3
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 6.5e-235 818.5 804 54.7
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 8.6e-195 685.3 762 48.4
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 3.0e-187 660.2 1210 36.4
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 1.0e-171 608.6 576 53.8
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 1.3e-166 591.7 1206 34.1
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 2.1e-156 557.8 440 64.1
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 6.9e-152 542.7 614 48.4
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 3.8e-134 483.8 462 52.4
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 6.9e-128 463.0 1112 33.0
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 2.8e-121 441.0 866 35.0
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 4.7e-116 423.7 394 53.8
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.0e-114 418.3 433 52.4
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 3.4e-98 364.4 517 40.2
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 1.5e-93 349.0 296 60.5
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 9.5e-93 346.3 416 43.3
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 2.4e-80 305.1 221 67.4
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 8.6e-70 270.0 192 69.8
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 6.4e-65 253.8 204 61.3
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 3.6e-60 238.0 177 71.2
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-56 224.6 1120 24.0
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.7e-54 219.2 252 45.6
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 3.8e-49 201.4 190 53.2
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.0e-30 140.2 121 57.0
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 8.2e-28 130.6 155 46.5
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 3.8e-25 121.7 312 30.4
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 6.1e-23 114.4 592 24.2
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 2.6e-18 99.0 642 22.0
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 4.2e-16 91.7 107 50.5
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 3.9e-14 85.1 58 67.2
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 1.8e-11 76.3 113 45.1
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 2.4e-11 75.9 54 70.4
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 3.1e-11 75.5 53 66.0
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 5.9e-10 71.2 57 57.9
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 5.0e-09 68.2 48 62.5
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 1.9e-08 66.2 48 62.5
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 4.2e-08 65.1 48 62.5


User provided reference genes

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