Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 2.1e-227 792.0 388 100.0
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 2.8e-163 578.9 390 71.5
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 6.3e-163 577.8 389 72.2
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 4.2e-159 565.1 395 70.4
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 1.6e-158 563.1 391 71.9
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 2.6e-156 555.8 389 68.6
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 4.4e-156 555.1 382 71.2
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 7.5e-156 554.3 388 68.6
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 2.8e-155 552.4 390 70.3
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 2.8e-155 552.4 387 68.2
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 1.4e-154 550.1 388 68.6
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 4.1e-154 548.5 388 67.8
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 1.2e-153 547.0 390 69.2
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 3.5e-153 545.4 386 69.4
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 4.5e-153 545.0 397 69.0
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 5.9e-153 544.7 455 61.8
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.7e-152 543.1 387 68.5
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.7e-152 543.1 388 67.3
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 2.2e-152 542.7 386 68.4
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 5.0e-152 541.6 387 68.2
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 2.7e-150 535.8 386 65.5
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 1.2e-148 530.4 388 65.2
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.5e-148 530.0 392 66.6
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 2.0e-148 529.6 399 64.7
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 7.5e-148 527.7 387 67.4
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 3.7e-147 525.4 381 66.1
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 4.8e-147 525.0 406 64.5
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 3.1e-146 522.3 426 62.2
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 4.1e-146 521.9 389 64.8
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 1.6e-145 520.0 385 65.5
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 3.5e-145 518.8 406 63.5
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 4.5e-145 518.5 383 65.3
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 4.5e-145 518.5 388 63.1
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 5.9e-145 518.1 385 64.2
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 7.7e-145 517.7 387 64.3
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 2.9e-144 515.8 419 62.5
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 6.6e-144 514.6 421 62.0
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 9.5e-143 510.8 384 64.6
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 2.8e-142 509.2 386 63.7
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 4.7e-142 508.4 387 62.5
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 6.1e-142 508.1 388 63.9
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 8.0e-142 507.7 388 62.6
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 1.4e-141 506.9 385 63.4
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 1.4e-141 506.9 471 55.6
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 8.9e-141 504.2 388 63.7
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 1.5e-140 503.4 385 62.6
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 2.0e-140 503.1 413 62.2
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 2.6e-140 502.7 388 63.4
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 3.4e-140 502.3 500 54.0
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 3.4e-140 502.3 356 68.3
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 9.8e-140 500.7 387 63.0
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 1.3e-139 500.4 391 62.1
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 1.3e-139 500.4 391 62.1
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 2.2e-139 499.6 390 62.1
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 1.8e-138 496.5 386 61.7
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 3.1e-138 495.7 390 61.0
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 3.1e-138 495.7 386 62.7
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 4.1e-138 495.4 385 62.3
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 4.1e-138 495.4 390 64.6
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 7.0e-138 494.6 385 61.0
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 9.2e-138 494.2 392 62.5
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 1.2e-137 493.8 386 62.2
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.3e-136 490.3 356 67.7
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 2.9e-136 489.2 384 60.9
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 6.6e-136 488.0 386 60.9
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 1.9e-135 486.5 388 60.3
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 3.3e-135 485.7 387 60.2
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 5.6e-135 485.0 384 62.2
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 9.5e-135 484.2 414 57.2
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 1.6e-134 483.4 393 60.6
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 1.7e-131 473.4 388 60.8
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 2.3e-128 463.0 367 61.9
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 3.9e-128 462.2 384 56.2
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 5.6e-127 458.4 388 59.5
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 1.2e-126 457.2 402 57.5
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 2.3e-125 453.0 388 57.7
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 1.1e-122 444.1 368 60.6
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 8.6e-120 434.5 388 55.9
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 1.5e-119 433.7 394 54.8
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 2.5e-119 433.0 379 57.5
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 1.6e-118 430.3 385 59.2
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 4.7e-118 428.7 386 54.1
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 1.8e-117 426.8 385 53.2
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.2e-116 424.1 394 55.8
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 1.7e-112 410.2 509 47.7
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 3.6e-110 402.5 307 63.5
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 4.9e-99 365.5 416 49.8
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 9.3e-98 361.3 332 54.5
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 2.1e-94 350.1 218 74.8
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.7e-91 340.5 281 60.5
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 2.4e-85 320.1 384 44.0
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.2e-84 317.8 296 55.1
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 7.1e-82 308.5 385 44.2
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 1.0e-80 304.7 217 67.7
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 5.7e-79 298.9 170 77.6
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 2.0e-76 290.4 386 41.7
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 1.5e-71 274.2 364 44.0
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 5.7e-71 272.3 410 44.4
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 2.4e-69 266.9 168 68.5
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 3.8e-67 259.6 241 56.4
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 6.5e-67 258.8 146 76.0
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 1.2e-65 254.6 239 56.9
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 1.0e-64 251.5 141 76.6
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 5.7e-63 245.7 253 53.4
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 1.4e-53 214.5 383 37.9
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 2.0e-52 210.7 382 38.2
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 3.5e-52 209.9 113 81.4
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.2e-51 207.2 121 76.9
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 8.5e-51 205.3 134 71.6
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 9.4e-50 201.8 561 28.0
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 1.1e-47 194.9 174 57.5
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 9.1e-45 185.3 245 41.6
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 6.5e-43 179.1 138 60.1
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 2.7e-41 173.7 273 39.6
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 2.3e-40 170.6 180 51.7
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 2.8e-38 163.7 242 40.5
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 5.4e-37 159.5 99 70.7
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 2.7e-36 157.1 433 29.8
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 7.0e-29 132.5 79 78.5
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.2e-25 121.7 129 49.6
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 6.1e-25 119.4 425 27.5
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 2.9e-22 110.5 58 82.8
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 4.9e-22 109.8 459 24.4
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 2.4e-21 107.5 228 34.6
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 2.4e-21 107.5 228 34.6
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 6.6e-19 99.4 185 38.9
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 5.6e-18 96.3 54 81.5
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 4.0e-16 90.1 69 53.6
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.2e-15 88.6 55 72.7
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 1.6e-09 68.2 40 72.5
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 2.3e-08 64.3 31 77.4
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 5.2e-08 63.2 41 65.9
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 2.6e-07 60.8 27 88.9
Actinidia29794 Actinidia chinensis HOM05D005790 ORTHO05D030850 1.3e-06 58.5 31 67.7
Lsat_1_v5_gn_4_78400 Lactuca sativa HOM05D000464 ORTHO05D006292 3.7e-06 57.0 313 22.7
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 6.4e-06 56.2 144 24.3
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 8.3e-06 55.8 144 24.3


User provided reference genes

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