Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 8.2e-233 810.1 423 100.0
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 7.2e-213 743.8 424 90.3
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 3.7e-209 731.5 420 88.8
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 3.7e-209 731.5 420 89.3
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 6.3e-209 730.7 423 88.2
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 6.3e-209 730.7 423 88.2
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 8.3e-209 730.3 423 88.4
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.8e-208 729.2 420 88.8
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 1.8e-208 729.2 420 89.0
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 3.1e-208 728.4 420 88.1
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 4.1e-208 728.0 422 87.4
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 7.0e-208 727.2 422 87.7
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 1.6e-207 726.1 419 88.3
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 2.0e-207 725.7 420 89.0
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 2.7e-207 725.3 419 88.3
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 4.5e-207 724.5 423 87.5
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 4.5e-207 724.5 419 87.8
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 4.5e-207 724.5 423 87.5
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 5.9e-207 724.2 422 87.9
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 5.9e-207 724.2 423 87.5
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 7.8e-207 723.8 420 87.6
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.3e-206 723.0 422 87.4
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 1.7e-206 722.6 423 87.9
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 1.7e-206 722.6 420 87.4
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 1.7e-206 722.6 420 88.6
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 2.3e-206 722.2 423 87.7
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 3.8e-206 721.5 422 87.0
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 3.8e-206 721.5 420 87.1
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 5.0e-206 721.1 419 88.5
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 5.0e-206 721.1 422 87.0
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 5.0e-206 721.1 422 87.0
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 8.6e-206 720.3 423 87.7
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 1.1e-205 719.9 423 86.5
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.5e-205 719.5 420 87.4
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 1.9e-205 719.2 420 87.6
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.9e-205 719.2 423 86.8
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.5e-205 718.8 422 86.7
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 2.5e-205 718.8 422 87.9
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 2.5e-205 718.8 423 86.3
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 3.3e-205 718.4 422 86.3
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 3.3e-205 718.4 422 86.7
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 4.3e-205 718.0 420 86.9
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 4.3e-205 718.0 419 87.4
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 4.3e-205 718.0 419 87.6
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.6e-205 717.6 422 86.3
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 5.6e-205 717.6 422 86.3
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 9.5e-205 716.8 420 87.4
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 9.5e-205 716.8 419 87.4
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 1.2e-204 716.5 420 87.4
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 1.2e-204 716.5 422 86.7
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.6e-204 716.1 422 86.7
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.6e-204 716.1 422 87.0
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.6e-204 716.1 419 87.1
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 2.8e-204 715.3 422 86.5
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 4.7e-204 714.5 419 86.6
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 4.7e-204 714.5 422 86.7
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 8.0e-204 713.8 422 87.2
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 1.0e-203 713.4 422 87.2
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 1.0e-203 713.4 423 85.1
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.4e-203 713.0 423 85.8
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.4e-203 713.0 420 86.0
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.4e-203 713.0 431 85.2
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.8e-203 712.6 423 86.1
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 2.3e-203 712.2 419 87.1
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 3.0e-203 711.8 422 86.5
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 3.0e-203 711.8 422 86.7
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 3.0e-203 711.8 422 86.0
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 3.0e-203 711.8 423 86.8
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 3.0e-203 711.8 423 85.8
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 4.0e-203 711.4 423 86.1
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 4.0e-203 711.4 422 86.0
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 6.8e-203 710.7 422 86.7
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 8.9e-203 710.3 422 86.0
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 8.9e-203 710.3 423 85.8
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.5e-202 709.5 419 86.6
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 1.5e-202 709.5 422 85.3
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.5e-202 709.5 419 86.2
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 2.0e-202 709.1 422 87.0
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 2.0e-202 709.1 423 85.8
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 2.6e-202 708.8 422 86.3
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 2.6e-202 708.8 422 86.5
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 2.6e-202 708.8 422 86.5
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 3.4e-202 708.4 423 85.8
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 5.7e-202 707.6 421 85.3
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 7.5e-202 707.2 419 85.9
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 7.5e-202 707.2 419 85.9
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 9.8e-202 706.8 422 86.5
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 9.8e-202 706.8 422 86.0
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 9.8e-202 706.8 423 87.0
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 9.8e-202 706.8 419 85.4
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 9.8e-202 706.8 419 86.2
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 1.3e-201 706.4 421 85.3
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 2.2e-201 705.7 422 85.8
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.2e-201 705.7 440 83.9
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.9e-201 705.3 418 86.1
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 3.7e-201 704.9 422 85.8
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 8.3e-201 703.7 419 85.7
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 1.8e-200 702.6 421 84.8
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 1.8e-200 702.6 421 84.8
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 4.1e-200 701.4 431 83.5
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 7.0e-200 700.7 423 83.5
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 7.0e-200 700.7 419 86.4
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 9.2e-200 700.3 471 78.6
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 9.2e-200 700.3 471 78.6
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.6e-199 699.5 434 83.2
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.0e-199 699.1 419 86.4
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.0e-199 699.1 452 81.9
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.7e-199 698.7 438 82.4
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 3.5e-199 698.4 422 85.1
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 3.5e-199 698.4 422 85.1
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 4.6e-199 698.0 423 83.5
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 1.7e-198 696.0 453 80.6
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 3.0e-198 695.3 425 83.5
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 8.6e-198 693.7 428 84.1
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 1.1e-197 693.3 423 84.2
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.4e-195 686.4 423 85.1
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 1.4e-192 676.4 388 89.4
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 7.0e-192 674.1 426 81.0
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.9e-189 666.0 392 86.0
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 3.3e-189 665.2 502 72.1
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.4e-187 659.8 423 81.1
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 8.9e-187 657.1 389 85.1
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.6e-186 655.6 469 76.1
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.3e-185 653.3 416 83.2
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 4.9e-185 651.4 375 87.5
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 7.1e-184 647.5 421 80.3
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 1.7e-182 642.9 378 84.9
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 5.1e-182 641.3 363 89.5
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 8.6e-182 640.6 373 87.4
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 1.5e-178 629.8 400 79.5
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 4.4e-178 628.2 398 79.9
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 2.2e-169 599.4 426 72.3
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.9e-169 599.0 410 77.8
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 4.2e-168 595.1 398 74.1
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 7.1e-168 594.3 423 74.5
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 2.0e-162 576.2 334 87.1
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 8.7e-158 560.8 310 91.6
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 4.8e-148 528.5 396 66.9
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 8.2e-148 527.7 422 64.2
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 1.5e-141 506.9 402 63.9
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.4e-139 499.6 459 63.2
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 9.0e-139 497.7 280 91.1
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.5e-137 491.1 284 87.0
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 2.6e-130 469.5 392 67.9
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 1.0e-126 457.6 260 87.7
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 9.7e-117 424.5 243 89.3
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 1.0e-105 387.9 236 83.5
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 9.4e-104 381.3 225 85.8
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 6.1e-103 378.6 244 79.9
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 9.1e-99 364.8 205 90.2
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 2.8e-87 326.6 287 65.9
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 8.6e-73 278.5 207 71.0
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 1.1e-72 278.1 287 51.6
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 3.0e-65 253.4 147 85.0
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 8.4e-60 235.3 191 60.7
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 7.1e-51 205.7 134 76.1
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 2.7e-50 203.8 198 62.6
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 6.6e-49 199.1 130 75.4
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 3.4e-45 186.8 114 88.6
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 8.1e-39 165.6 288 36.1
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 3.4e-37 160.2 150 63.3
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 8.4e-36 155.6 157 59.9
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 1.1e-35 155.2 157 59.2
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 1.6e-34 151.4 109 74.3
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 1.1e-30 138.7 190 40.5
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.3e-25 120.9 82 74.4
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 1.5e-24 118.2 149 50.3
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.1e-22 112.1 69 79.7
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 4.8e-15 86.7 50 94.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 9.1e-14 82.4 49 87.8
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 1.1e-11 75.5 40 95.0
Haze_26311 Corylus avellana HOM05D002944 ORTHO05D003377 1.4e-11 75.1 374 27.8
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 2.5e-11 74.3 101 47.5
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 1.4e-09 68.6 37 86.5
Cre05.g241850 Chlamydomonas reinhardtii HOM05D002061 ORTHO05D002849 1.8e-06 58.2 368 25.3
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 9.1e-06 55.8 63 49.2


User provided reference genes

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