Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 0.0e+00 1278.5 643 100.0
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 2.7e-296 1021.5 614 83.1
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 4.4e-294 1014.2 607 83.7
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.4e-292 1008.4 606 82.7
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 5.3e-292 1007.3 612 81.9
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 7.7e-291 1003.4 616 82.5
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 7.7e-291 1003.4 613 82.1
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 614 82.1
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 613 81.4
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 615 81.1
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.9e-290 1001.5 612 81.5
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 3.8e-290 1001.1 612 81.4
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 8.5e-290 1000.0 609 83.6
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 2.5e-289 998.4 583 84.9
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 3.2e-289 998.0 616 79.9
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 3.2e-289 998.0 616 79.9
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 5.5e-289 997.3 618 81.7
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 9.4e-289 996.5 616 81.8
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 9.4e-289 996.5 616 82.1
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.1e-288 995.3 616 80.5
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.7e-288 995.0 623 81.2
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 4.7e-288 994.2 613 81.6
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 6.1e-288 993.8 612 82.0
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 6.1e-288 993.8 606 81.4
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 6.1e-288 993.8 613 82.2
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 8.0e-288 993.4 621 80.8
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 8.0e-288 993.4 609 81.6
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.0e-287 993.0 608 81.9
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.0e-287 993.0 611 81.8
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 1.0e-287 993.0 606 81.2
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 1.8e-287 992.3 577 85.4
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.8e-287 992.3 611 81.8
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 2.3e-287 991.9 626 80.2
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 3.0e-287 991.5 621 81.5
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 3.0e-287 991.5 608 81.7
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.0e-287 991.1 623 80.4
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 4.0e-287 991.1 621 79.7
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 5.2e-287 990.7 620 81.3
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 5.2e-287 990.7 621 80.8
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 5.2e-287 990.7 565 85.3
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 6.8e-287 990.3 558 87.1
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.2e-286 989.6 611 81.8
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.6e-286 988.4 615 80.0
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.6e-286 988.4 611 81.8
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 4.4e-286 987.6 581 83.6
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 4.4e-286 987.6 620 79.5
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 7.5e-286 986.9 606 80.7
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 7.5e-286 986.9 606 80.7
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 7.5e-286 986.9 606 80.7
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 7.5e-286 986.9 607 81.5
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 9.7e-286 986.5 578 83.9
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.3e-285 986.1 616 79.9
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.3e-285 986.1 558 86.7
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.7e-285 985.7 608 81.2
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 2.8e-285 984.9 611 81.0
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 2.8e-285 984.9 612 80.1
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 3.7e-285 984.6 617 79.9
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 6.3e-285 983.8 652 78.4
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 8.3e-285 983.4 611 81.0
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.1e-284 983.0 615 80.0
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 1.8e-284 982.2 586 82.9
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 5.3e-284 980.7 602 80.9
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 5.3e-284 980.7 612 80.9
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 2.0e-283 978.8 610 81.3
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.5e-283 977.6 567 84.0
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 5.9e-283 977.2 610 81.6
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 5.9e-283 977.2 614 80.8
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 5.9e-283 977.2 609 81.8
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 7.7e-283 976.9 620 80.2
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 7.7e-283 976.9 611 80.7
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.0e-282 976.5 606 79.5
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.3e-282 976.1 563 84.4
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.3e-282 976.1 610 80.3
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 2.9e-282 974.9 606 80.9
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 2.9e-282 974.9 606 80.9
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 2.9e-282 974.9 616 80.7
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.9e-282 974.9 606 79.7
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 6.5e-282 973.8 609 81.0
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 8.5e-282 973.4 608 80.9
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 8.5e-282 973.4 608 81.1
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 8.5e-282 973.4 608 81.1
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 8.5e-282 973.4 571 83.5
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 1.1e-281 973.0 608 80.9
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 1.5e-281 972.6 596 82.6
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 1.9e-281 972.2 623 78.5
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 3.2e-281 971.5 630 78.1
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 5.5e-281 970.7 613 80.6
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 9.4e-281 969.9 618 78.8
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.1e-280 968.8 591 80.7
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 8.0e-280 966.8 558 85.1
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.0e-279 966.5 611 80.2
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 1.4e-279 966.1 605 79.5
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 2.3e-279 965.3 564 84.2
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 3.0e-279 964.9 619 80.1
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 5.2e-279 964.1 603 79.1
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 8.8e-279 963.4 622 79.1
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.2e-278 963.0 541 87.1
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 2.0e-278 962.2 606 79.5
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 5.7e-278 960.7 612 79.7
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 2.8e-277 958.4 614 79.0
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 8.3e-277 956.8 649 74.7
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 7.0e-276 953.7 582 81.6
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.2e-275 953.0 640 76.9
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 5.9e-275 950.7 627 76.7
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 8.0e-272 940.3 527 87.1
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.0e-271 938.3 574 79.8
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.0e-271 937.9 568 82.0
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 8.9e-271 936.8 706 70.1
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.8e-269 931.8 684 71.9
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 3.7e-269 931.4 583 78.6
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 7.0e-268 927.2 579 77.5
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 8.6e-266 920.2 560 80.2
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.5e-262 907.1 557 81.7
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 3.7e-261 904.8 588 74.5
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 6.0e-259 897.5 613 75.2
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.1e-257 893.3 558 78.3
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 2.0e-254 882.5 589 73.0
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.1e-251 872.5 505 85.5
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 6.0e-251 870.9 539 80.1
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.2e-248 863.2 527 80.1
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 2.1e-248 862.4 630 71.7
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 8.1e-248 860.5 624 70.8
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.4e-236 822.4 613 70.5
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 1.7e-234 816.2 592 67.6
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 4.8e-232 808.1 557 69.1
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.7e-226 789.6 490 79.8
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 2.1e-219 766.1 481 80.7
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 1.8e-218 763.1 490 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 5.1e-218 761.5 547 71.5
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 4.2e-212 741.9 544 65.6
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 9.6e-209 730.7 426 84.7
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 1.4e-207 726.9 433 83.4
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.2e-205 719.5 490 75.7
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 2.5e-204 716.1 433 80.6
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.0e-202 709.1 580 60.5
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.9e-202 708.8 440 80.0
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 6.3e-184 648.3 403 80.9
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 2.7e-171 606.3 433 73.2
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.0e-166 590.1 586 52.4
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.2e-165 586.6 312 92.6
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 7.5e-145 518.5 384 71.9
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 7.8e-134 481.9 339 76.7
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 1.1e-119 434.9 283 76.0
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 3.4e-105 386.7 277 68.6
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 7.4e-92 342.4 216 77.8
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.6e-78 297.0 202 73.8
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 1.3e-75 288.5 206 72.8
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 1.4e-74 285.0 557 33.4
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 3.4e-73 280.4 150 90.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 2.6e-60 237.7 131 87.0
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 4.5e-57 226.9 133 78.9
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 6.5e-56 223.0 127 82.7
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 6.3e-51 206.5 116 92.2
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 1.6e-49 201.8 109 89.9
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.0e-49 201.4 115 84.3
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 1.0e-48 199.1 114 82.5
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 1.7e-48 198.4 178 61.8
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 7.2e-47 193.0 115 79.1
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.3e-45 188.0 144 67.4
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.6e-44 184.5 105 81.0
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 2.3e-40 171.4 214 49.5
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 9.5e-39 166.0 104 76.9
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 4.0e-37 160.6 251 43.8
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.5e-36 158.7 136 64.7
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 3.2e-26 124.4 115 60.0
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 4.1e-26 124.0 61 95.1
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 4.7e-22 110.5 70 71.4
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.3e-21 108.2 56 94.6
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 2.0e-20 105.1 212 34.0
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.0e-16 91.3 90 55.6
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 5.6e-15 87.0 180 29.4
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 2.3e-13 81.6 54 70.4
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 3.4e-12 77.8 90 53.3


User provided reference genes

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