Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 4972.5 2552 100.0
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2496.1 2605 52.2
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 2456.4 2590 52.2
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2443.7 2613 52.3
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2433.3 2597 52.1
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2395.9 2603 51.1
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2382.8 2613 50.9
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2367.8 2607 51.2
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2338.9 2603 50.5
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2335.1 2588 50.4
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2330.4 2593 50.6
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2298.1 2603 49.7
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 2277.7 2655 49.3
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2262.6 2600 49.1
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2261.1 2622 48.7
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 2247.6 2615 49.3
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2231.1 2591 48.8
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 2206.8 2608 48.8
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2159.8 2604 47.8
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 2155.6 2665 47.7
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 2097.0 2584 46.6
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 2095.9 2279 51.0
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2087.4 2570 46.4
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2086.2 2625 45.6
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 2085.1 2591 46.4
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 2082.4 2717 45.7
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2026.1 2646 45.0
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 2011.1 2591 45.3
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1998.0 2620 44.7
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1997.2 2603 44.9
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1989.9 2592 45.3
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1974.9 2599 45.0
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1970.7 2611 44.0
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1955.6 2593 45.3
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1944.5 2598 43.9
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1938.3 2595 43.4
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1925.2 2593 44.7
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1923.3 2610 44.8
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1914.4 2358 46.6
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1914.0 2603 43.8
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1911.3 2569 44.0
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1910.2 2597 44.6
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1909.8 2599 43.2
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1909.0 2600 44.1
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1907.9 2589 43.8
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1904.4 2573 43.9
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1892.9 2595 44.0
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1892.5 2654 42.5
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1891.3 2596 43.9
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1882.5 2604 43.4
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1881.7 2588 43.7
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1878.2 2640 42.4
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1875.9 2537 44.4
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1860.5 2654 42.1
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1849.7 2605 42.6
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1846.6 2600 43.2
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1839.7 2622 42.7
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1835.5 2667 42.2
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1827.4 2653 41.6
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1826.6 2566 43.5
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1821.2 2655 42.3
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1810.0 2594 42.3
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1796.9 2620 41.7
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1789.2 2630 42.3
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1786.5 2753 40.6
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1782.3 2533 43.6
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1763.0 2678 41.2
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1743.4 2556 42.1
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1709.5 2526 41.9
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1708.3 2536 42.4
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1675.6 2449 42.0
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1674.8 1785 51.5
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1651.0 2637 40.4
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1639.8 2658 39.8
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1637.1 2626 40.5
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1623.6 2659 39.9
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1620.5 2586 40.3
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1600.1 2596 39.3
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1592.4 2137 44.4
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1548.9 2557 38.2
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1538.9 2594 39.2
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1537.3 2588 39.3
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1497.6 2296 39.7
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1473.0 2058 43.3
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1467.6 2582 38.1
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1451.0 2636 36.2
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1441.4 2030 41.6
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1421.8 2270 40.1
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1421.4 2341 38.7
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1401.3 2229 39.8
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1342.4 1741 44.8
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1310.4 2033 39.7
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1302.0 2199 39.0
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1276.5 2101 39.2
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 1176.0 2489 34.4
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1158.7 1787 40.9
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 3.7e-304 1049.7 1703 38.9
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.0e-245 855.5 785 59.6
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.0e-241 841.3 913 51.0
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 8.2e-219 766.1 2753 27.8
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.1e-207 729.2 812 49.9
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 5.7e-204 716.8 2543 26.6
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.9e-200 704.5 1227 37.1
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 5.5e-199 700.3 2724 26.9
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 8.8e-197 693.0 617 60.6
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.7e-195 687.6 1157 38.1
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 4.3e-183 647.5 2511 27.4
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.1e-182 645.2 572 60.7
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 4.7e-166 590.9 2770 24.7
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.7e-155 555.8 727 45.3
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 2.2e-155 555.4 607 52.2
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.7e-145 521.9 1139 33.8
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.3e-139 503.1 1123 32.1
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 5.5e-138 497.7 566 50.0
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.8e-133 482.6 759 40.6
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.6e-132 477.2 945 35.0
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 1.9e-130 472.6 537 48.0
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 2.4e-117 429.1 661 44.3
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.9e-114 419.5 424 51.9
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.9e-104 385.2 854 32.8
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 5.3e-101 374.8 696 36.6
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.0e-100 372.9 478 43.9
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 1.2e-97 363.6 311 64.0
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 5.2e-96 358.2 471 45.4
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 1.5e-90 340.1 339 56.0
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 2.3e-80 306.2 2713 21.7
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.8e-77 296.6 394 43.7
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 1.5e-55 223.8 183 60.1
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 2.2e-54 219.9 348 35.6
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.9e-53 216.9 176 68.8
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 5.6e-50 205.3 188 59.6
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.2e-49 204.1 525 30.5
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 2.6e-47 196.4 351 37.6
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 6.6e-43 181.8 244 45.5
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.6e-41 177.2 334 38.0
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.8e-41 176.4 277 39.0
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 3.6e-41 176.0 234 43.6
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 4.6e-36 159.1 151 57.6
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 2.0e-31 143.7 345 33.3
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 4.5e-31 142.5 140 48.6
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 1.7e-30 140.6 126 54.8
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 9.3e-29 134.8 183 42.1
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.5e-28 132.9 243 31.7
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 3.0e-27 129.8 242 38.4
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 4.3e-26 125.9 204 39.2
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 4.9e-22 112.5 92 57.6
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 6.4e-22 112.1 122 47.5
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 1.3e-19 104.4 207 41.1
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 3.7e-17 96.3 72 62.5
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.4e-16 94.4 82 52.4
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 9.0e-16 91.7 86 50.0
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 9.0e-16 91.7 86 50.0
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 5.8e-15 89.0 150 40.0
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 1.0e-14 88.2 142 36.6
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.7e-14 87.4 101 46.5
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 4.9e-14 85.9 96 49.0
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.9e-13 84.0 135 36.3
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.9e-12 78.6 155 36.8
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 3.9e-11 76.3 286 24.1
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 8.7e-11 75.1 114 36.0
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 1.1e-10 74.7 78 52.6
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 7.4e-10 72.0 67 49.3
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.4e-10 72.0 411 22.6
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 3.7e-09 69.7 53 64.2
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 4.8e-09 69.3 124 37.1
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 6.3e-09 68.9 74 51.4
QL08p010925 Quercus lobata HOM05D003876 ORTHO05D004560 2.6e-07 63.5 98 41.8
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.6e-07 63.5 223 27.8
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.9e-06 60.1 107 29.9
Psat5g198920 Pisum sativum HOM05D003876 ORTHO05D004560 3.8e-06 59.7 91 45.1
QL08p010874 Quercus lobata HOM05D003876 ORTHO05D004560 6.5e-06 58.9 42 66.7


User provided reference genes

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