Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 2.3e-124 449.1 265 100.0
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 7.8e-72 274.6 158 94.3
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 2.6e-67 259.6 169 84.6
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 2.6e-67 259.6 166 84.3
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.3e-66 257.3 157 87.3
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 2.9e-66 256.1 157 86.6
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 2.9e-66 256.1 155 87.7
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 3.7e-66 255.8 157 86.6
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 3.7e-66 255.8 157 86.6
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 4.9e-66 255.4 157 87.3
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 4.9e-66 255.4 157 86.6
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 4.9e-66 255.4 155 88.4
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 6.4e-66 255.0 157 87.3
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.1e-65 254.2 157 86.0
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 1.1e-65 254.2 165 84.2
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 2.4e-65 253.1 157 86.0
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 3.2e-65 252.7 157 86.0
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 3.2e-65 252.7 160 83.8
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 5.4e-65 251.9 164 81.7
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 5.4e-65 251.9 163 83.4
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 7.1e-65 251.5 157 86.0
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 7.1e-65 251.5 155 87.1
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 9.2e-65 251.1 165 83.6
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 9.2e-65 251.1 156 85.9
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.2e-64 250.8 157 84.1
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 1.2e-64 250.8 157 83.4
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 1.2e-64 250.8 157 84.7
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 1.2e-64 250.8 164 82.9
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.6e-64 250.4 157 84.7
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 2.1e-64 250.0 157 85.4
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 2.1e-64 250.0 157 85.4
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 3.5e-64 249.2 165 80.6
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 3.5e-64 249.2 154 87.0
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 3.5e-64 249.2 173 78.6
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 4.6e-64 248.8 157 84.7
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 4.6e-64 248.8 157 84.7
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 4.6e-64 248.8 156 84.6
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 6.0e-64 248.4 157 84.7
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 6.0e-64 248.4 157 84.1
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 7.8e-64 248.1 166 80.1
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 1.7e-63 246.9 157 82.2
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 2.3e-63 246.5 157 84.1
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 2.3e-63 246.5 171 78.4
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 3.0e-63 246.1 164 79.3
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 3.0e-63 246.1 164 79.3
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 5.1e-63 245.4 154 85.1
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 5.1e-63 245.4 157 82.2
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 5.1e-63 245.4 156 84.6
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 6.6e-63 245.0 164 80.5
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 6.6e-63 245.0 157 82.2
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 6.6e-63 245.0 164 80.5
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 6.6e-63 245.0 164 80.5
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 6.6e-63 245.0 164 81.1
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 6.6e-63 245.0 157 82.8
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 8.6e-63 244.6 162 81.5
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 8.6e-63 244.6 164 82.3
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 8.6e-63 244.6 166 78.9
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.1e-62 244.2 164 78.7
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.1e-62 244.2 164 78.7
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 1.1e-62 244.2 157 82.2
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 1.5e-62 243.8 179 75.4
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 1.5e-62 243.8 197 71.6
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.9e-62 243.4 162 78.4
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.5e-62 243.0 202 68.3
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 3.3e-62 242.7 162 80.9
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 3.3e-62 242.7 151 86.1
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 4.3e-62 242.3 157 81.5
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 5.6e-62 241.9 157 80.9
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.2e-61 240.7 154 81.8
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.6e-61 240.4 162 77.8
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.1e-61 240.0 199 68.3
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.1e-61 240.0 199 68.3
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 3.6e-61 239.2 157 80.3
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 3.6e-61 239.2 162 77.8
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 3.6e-61 239.2 165 78.2
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.8e-60 236.9 157 80.9
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 2.4e-60 236.5 157 79.0
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 2.4e-60 236.5 154 80.5
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.4e-60 236.5 162 76.5
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 4.0e-60 235.7 156 80.1
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 4.0e-60 235.7 154 79.9
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 4.0e-60 235.7 154 79.9
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 5.2e-60 235.3 156 80.8
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 8.9e-60 234.6 157 77.7
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.2e-59 234.2 159 78.6
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.5e-59 233.8 157 77.7
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 5.8e-59 231.9 164 74.4
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 1.3e-58 230.7 164 76.2
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 2.9e-58 229.6 148 83.1
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 3.8e-58 229.2 162 77.2
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 1.4e-57 227.3 150 81.3
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.9e-57 226.9 171 71.9
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 3.2e-57 226.1 140 84.3
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 7.1e-57 224.9 195 66.2
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 3.5e-56 222.6 157 73.9
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 7.8e-56 221.5 200 64.0
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 9.6e-54 214.5 141 80.1
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 2.8e-53 213.0 156 71.2
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.3e-50 204.1 155 67.1
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 1.7e-50 203.8 160 66.9
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.9e-50 203.0 156 68.6
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 6.4e-50 201.8 157 64.3
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 2.7e-48 196.4 141 77.3
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 6.9e-44 181.8 154 64.9
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 2.9e-42 176.4 151 62.9
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.0e-39 166.4 144 65.3
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.7e-32 143.3 100 77.0
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.4e-28 130.2 103 72.8
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 9.3e-25 118.2 77 84.4
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 1.6e-21 107.5 64 85.9
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.1e-20 104.8 100 56.0
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 1.2e-19 101.3 149 40.3
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 6.5e-18 95.5 98 57.1
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 2.1e-16 90.5 74 66.2
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 2.1e-16 90.5 56 80.4
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 2.3e-15 87.0 95 47.4
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 2.3e-15 87.0 95 47.4
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 5.1e-15 85.9 171 36.3
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 2.2e-13 80.5 52 75.0
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 4.1e-12 76.3 43 81.4
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.1e-12 76.3 64 60.9
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 5.3e-12 75.9 42 83.3
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 4.2e-09 66.2 59 52.5
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 4.2e-09 66.2 60 60.0
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.2e-08 64.7 38 78.9
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 7.9e-08 62.0 35 82.9
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 6.7e-07 58.9 33 81.8
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 4.4e-06 56.2 38 71.1


User provided reference genes

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