Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 4025.3 2131 100.0
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2494.2 2211 64.2
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2330.4 2228 60.2
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2319.3 2225 60.7
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2302.7 2226 60.2
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2301.9 2215 60.7
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2293.5 2207 60.2
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2283.1 2229 59.7
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2263.8 2251 58.9
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2256.9 2225 59.8
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2256.5 2215 58.9
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2232.6 2219 59.1
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2219.1 2245 58.4
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2218.7 2210 58.5
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2216.0 2217 58.1
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2213.0 2219 58.7
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2209.9 2235 58.5
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2198.7 2271 57.5
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2191.8 2280 57.4
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2185.2 2226 58.4
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2183.3 2263 57.7
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2171.4 2291 56.7
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2169.0 2231 57.8
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2166.3 2253 57.8
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2143.2 2224 57.5
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2140.2 2225 56.8
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 2114.3 2233 55.9
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2113.2 2225 56.2
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2112.4 2226 55.7
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2109.0 2257 55.1
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2102.0 2227 55.7
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 2100.9 2239 55.8
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2098.9 2232 55.6
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 2098.2 2229 56.0
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2052.7 2344 53.3
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 2035.0 2231 54.6
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 2026.5 2267 53.7
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 1998.4 2237 54.2
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 1988.4 2234 54.5
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1972.2 2202 54.4
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1970.7 2233 54.1
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1968.0 1722 63.6
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1966.0 2220 54.2
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1958.3 2196 53.3
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 1953.3 2240 53.1
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1941.0 2191 53.4
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1936.8 2203 52.9
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1928.3 2197 53.0
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 1920.6 2319 51.7
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 1917.9 2314 51.1
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1917.1 2027 55.8
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1912.1 2191 52.5
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1911.0 2230 52.3
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1909.8 2027 56.1
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1905.6 2199 52.2
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 1897.9 2273 51.5
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1889.8 2229 51.9
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 1880.9 2143 53.2
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1880.1 2226 51.9
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1880.1 2193 51.8
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1879.8 2279 51.4
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1879.4 2182 52.6
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1876.7 2163 53.6
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1873.6 2277 51.2
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1872.1 2175 52.2
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1863.6 2218 52.0
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1862.4 2213 51.7
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1858.2 2179 52.3
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1856.6 2204 52.2
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1854.0 2235 50.8
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1848.9 2198 51.9
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1842.8 2196 51.5
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1837.8 2258 49.6
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1828.5 2212 50.5
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1823.5 2203 51.5
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1808.5 2198 51.8
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1808.1 2125 53.5
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1789.6 1940 54.5
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1747.3 1387 65.5
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1741.1 2104 52.7
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1729.1 2142 50.7
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1722.6 2226 49.0
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1722.2 2156 50.1
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1718.7 2190 48.9
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1705.3 2135 50.2
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1689.9 1392 63.4
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1686.0 1391 63.4
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1666.4 1427 63.2
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1578.9 2352 44.1
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1434.9 1920 46.3
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1407.1 2264 42.8
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1378.6 1251 58.8
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1243.4 1469 54.1
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1187.2 2200 39.4
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 1.3e-305 1054.3 1621 44.8
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 2.7e-292 1010.0 1364 49.6
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 1.8e-283 980.7 817 65.1
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 1.2e-271 941.4 1240 49.0
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 4.0e-267 926.4 1111 47.4
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 2.4e-256 890.6 1263 48.5
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.0e-251 875.2 1265 44.0
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 3.3e-245 853.6 1383 44.1
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 1.6e-191 675.2 1795 31.2
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.2e-170 605.9 486 64.2
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.5e-168 598.2 932 43.8
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 1.2e-143 516.2 1019 42.6
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 2.2e-140 505.4 844 48.0
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 6.4e-132 477.2 426 58.7
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 2.5e-128 465.3 2214 28.0
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 9.8e-125 453.4 438 60.0
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 6.4e-124 450.7 943 41.0
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 1.4e-123 449.5 1662 28.6
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 1.9e-120 439.1 903 36.8
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 3.6e-119 434.9 1123 34.4
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 2.4e-110 405.6 650 42.3
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 5.1e-105 387.9 851 41.5
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 4.3e-104 384.8 851 41.4
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 6.4e-92 344.4 280 61.8
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 4.0e-86 325.1 299 59.5
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 5.3e-78 298.1 1365 24.0
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 9.0e-78 297.4 215 69.8
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.1e-75 290.4 385 43.1
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.8e-68 265.4 161 83.9
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.0e-65 257.3 327 45.9
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.2e-60 239.6 153 77.1
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 9.4e-59 234.2 329 43.2
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 1.8e-49 203.4 153 64.1
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 2.3e-49 203.0 439 41.7
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.2e-42 180.6 112 80.4
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 5.7e-40 171.8 195 63.6
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 8.3e-39 167.9 339 36.3
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.8e-33 150.2 205 42.9
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 2.6e-32 146.4 266 42.5
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 2.2e-31 143.3 461 35.1
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.6e-29 137.1 699 31.6
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 4.5e-29 135.6 113 60.2
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.3e-28 134.0 538 26.6
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 1.1e-27 131.0 458 33.0
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.5e-27 130.6 325 33.5
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.9e-27 130.2 224 37.5
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 3.6e-26 125.9 176 50.0
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 2.0e-21 110.2 68 75.0
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 7.3e-19 101.7 113 55.8
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.4e-14 87.4 236 35.2
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 7.0e-14 85.1 133 35.3
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.3e-12 80.9 105 52.4
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.7e-12 80.5 89 56.2
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 5.0e-12 79.0 212 32.5
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.1e-11 77.8 241 33.6
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 5.6e-11 75.5 75 62.7
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 2.8e-10 73.2 81 58.0
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 6.8e-09 68.6 45 75.6
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 4.4e-08 65.9 119 37.8
SHI25003 Sapria himalayana HOM05D004426 ORTHO05D002750 1.3e-07 64.3 95 37.9


User provided reference genes

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