Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 9.1e-306 1052.7 529 100.0
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 1.0e-168 597.4 543 55.4
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 3.7e-166 589.0 528 55.9
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 4.1e-165 585.5 535 55.9
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 5.4e-165 585.1 534 56.0
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.3e-163 580.5 532 54.9
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 4.3e-162 575.5 537 54.6
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 1.1e-160 570.9 536 55.2
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.8e-160 570.1 524 52.9
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 5.2e-160 568.5 531 55.0
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 6.8e-160 568.2 532 53.4
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.7e-158 563.5 533 53.8
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 1.7e-158 563.5 537 54.6
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 8.3e-158 561.2 545 52.8
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 9.2e-157 557.8 533 53.1
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 9.2e-157 557.8 536 53.7
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 2.7e-156 556.2 541 53.6
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 4.6e-156 555.4 525 53.0
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.1e-154 550.8 534 53.2
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 7.3e-154 548.1 537 53.3
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 9.5e-154 547.7 533 52.9
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.6e-153 545.8 537 52.7
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 3.6e-153 545.8 533 53.5
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.4e-152 543.9 535 52.3
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.4e-152 543.9 542 53.5
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.4e-152 543.9 540 52.8
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 6.8e-152 541.6 538 53.0
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 6.8e-152 541.6 530 53.8
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.5e-151 540.4 538 51.1
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 1.3e-150 537.3 532 52.8
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 3.7e-150 535.8 548 52.7
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.9e-149 533.5 537 52.1
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 2.1e-148 530.0 528 51.5
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 4.6e-148 528.9 527 51.0
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 6.0e-148 528.5 533 51.4
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.0e-148 528.5 533 51.4
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 1.3e-147 527.3 539 51.6
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 3.9e-147 525.8 538 51.9
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 8.6e-147 524.6 541 51.0
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 1.1e-146 524.2 527 51.4
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-146 524.2 530 51.1
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.9e-146 523.5 534 51.1
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 3.3e-146 522.7 528 52.3
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 3.3e-146 522.7 537 49.5
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 5.6e-146 521.9 530 51.7
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.2e-145 520.8 541 49.9
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.4e-144 517.3 527 51.2
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.4e-144 517.3 534 50.9
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.4e-144 516.5 530 51.3
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 4.0e-144 515.8 540 50.2
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.0e-143 513.5 525 50.3
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.4e-143 512.3 525 50.3
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.2e-140 504.2 538 48.9
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 4.6e-140 502.3 536 50.6
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 5.1e-139 498.8 536 47.8
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 5.6e-138 495.4 526 50.0
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 3.6e-137 492.7 542 48.2
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 3.6e-137 492.7 533 48.2
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 6.2e-137 491.9 526 48.3
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.1e-136 491.1 548 45.6
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 3.1e-136 489.6 529 47.6
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 5.2e-136 488.8 536 47.9
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 2.2e-134 483.4 456 56.6
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 4.9e-134 482.3 534 50.4
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 3.2e-133 479.6 548 44.5
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 5.4e-133 478.8 529 48.0
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 4.6e-132 475.7 548 44.7
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.8e-132 474.9 539 47.7
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.0e-131 474.6 539 44.9
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 4.0e-128 462.6 561 44.7
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 1.1e-125 454.5 539 44.0
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 2.7e-124 449.9 542 46.3
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 1.0e-123 448.0 550 45.8
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 5.1e-123 445.7 538 45.0
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 6.7e-123 445.3 534 44.9
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 8.7e-123 444.9 450 52.0
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 6.2e-121 438.7 529 44.0
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.4e-120 437.6 537 43.8
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 5.3e-120 435.6 536 46.3
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 6.9e-120 435.3 529 43.9
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 6.9e-120 435.3 559 44.2
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.2e-119 434.5 556 43.9
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.7e-118 430.6 535 45.6
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 6.4e-118 428.7 539 42.9
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 4.2e-117 426.0 532 43.0
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 1.0e-115 421.4 540 44.8
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 8.2e-113 411.8 540 43.5
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 1.5e-111 407.5 551 42.5
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.4e-109 401.0 593 40.5
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 9.3e-109 398.3 428 52.6
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 6.0e-108 395.6 532 40.8
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 5.1e-107 392.5 527 41.2
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 5.1e-107 392.5 527 41.2
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 5.1e-107 392.5 527 41.2
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 8.7e-107 391.7 535 41.1
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 4.3e-106 389.4 532 40.4
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 4.3e-106 389.4 524 41.6
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 1.9e-101 374.0 528 39.0
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.8e-99 367.5 527 40.8
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.4e-96 357.8 466 42.5
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 4.1e-96 356.3 516 41.3
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.8e-88 330.9 548 37.4
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 2.4e-88 330.5 482 41.3
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 3.2e-85 320.1 512 39.5
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 2.2e-81 307.4 297 52.9
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 2.8e-81 307.0 326 50.3
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 3.1e-80 303.5 622 33.0
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.2e-79 301.6 582 35.2
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.5e-77 293.9 285 54.0
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 4.8e-73 279.6 287 50.5
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 9.1e-72 275.4 318 48.7
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 1.7e-70 271.2 417 39.3
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 7.7e-63 245.7 325 44.9
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 4.2e-61 240.0 561 31.0
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.1e-60 237.7 228 49.1
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.5e-58 231.5 588 30.8
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 1.2e-44 185.3 561 27.8
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 3.4e-42 177.2 557 27.1
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 3.2e-40 170.6 320 33.1
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 4.1e-40 170.2 201 42.8
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.3e-38 165.2 384 28.6
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 7.3e-37 159.5 293 33.8
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 4.7e-28 130.2 216 37.5
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 2.2e-25 121.3 105 54.3
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 3.9e-22 110.5 131 45.0
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 2.4e-19 101.3 98 49.0
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.4e-19 101.3 199 36.7
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 4.0e-19 100.5 242 31.0
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 4.4e-18 97.1 194 30.9
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.9e-17 94.4 181 34.8
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.4e-17 93.2 181 34.3
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 8.4e-17 92.8 102 48.0
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 8.4e-17 92.8 144 38.9
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 3.2e-16 90.9 69 65.2
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 9.3e-16 89.4 118 39.8
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.3e-13 80.5 89 44.9
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.0e-11 72.8 111 35.1
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 1.2e-10 72.4 179 26.8
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.0e-10 71.6 53 60.4
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 9.9e-10 69.3 159 32.7
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 4.2e-08 63.9 58 44.8
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.6e-07 62.0 54 50.0
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 7.9e-07 59.7 49 57.1


User provided reference genes

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