Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 0.0e+00 1291.9 683 100.0
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 3.1e-157 559.7 626 54.6
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 8.0e-145 518.5 549 55.2
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 2.3e-144 516.9 520 58.3
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.3e-142 511.1 611 51.7
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 2.8e-142 510.0 531 57.4
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 2.7e-140 503.4 537 51.2
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 3.5e-140 503.1 545 53.4
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.3e-139 501.1 502 52.8
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.9e-138 497.3 550 50.7
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 4.2e-138 496.1 615 47.5
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.6e-137 494.2 610 51.3
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 2.8e-137 493.4 512 52.0
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.5e-135 487.6 529 52.7
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 2.6e-135 486.9 542 50.6
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 3.4e-135 486.5 548 52.2
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 5.7e-135 485.7 556 49.3
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 2.2e-134 483.8 508 53.9
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 8.3e-134 481.9 522 51.5
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.4e-133 480.3 522 51.3
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.4e-133 480.3 522 51.3
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.1e-133 479.9 522 51.3
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.0e-132 477.2 553 50.6
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 5.9e-132 475.7 524 53.1
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.9e-131 473.4 531 50.5
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 3.8e-131 473.0 525 52.6
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 5.0e-131 472.6 522 52.1
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 6.6e-131 472.2 553 50.5
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 6.6e-131 472.2 572 50.2
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 8.6e-131 471.9 531 53.1
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.9e-130 470.7 527 52.0
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 5.6e-130 469.2 524 51.5
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 2.8e-129 466.8 526 50.2
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 3.6e-129 466.5 553 48.1
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.6e-127 460.3 519 50.9
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 9.8e-127 458.4 507 48.3
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 3.7e-126 456.4 518 50.2
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 3.2e-125 453.4 581 47.8
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 3.2e-125 453.4 539 50.1
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.3e-123 448.0 562 46.8
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 3.3e-122 443.4 510 47.5
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 6.2e-121 439.1 551 47.5
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.1e-120 438.3 522 48.3
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 1.4e-120 438.0 526 49.4
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 1.8e-120 437.6 522 49.2
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 1.8e-120 437.6 526 49.4
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 2.0e-119 434.1 552 46.2
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 2.9e-118 430.3 488 46.5
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 3.7e-118 429.9 517 48.5
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 2.1e-116 424.1 556 44.4
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 7.8e-116 422.2 542 45.2
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 3.0e-115 420.2 496 48.2
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.9e-115 419.9 565 45.7
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 7.3e-114 415.6 512 47.3
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.6e-111 407.1 555 45.4
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 3.4e-111 406.8 559 43.3
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 5.8e-111 406.0 555 44.3
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 7.5e-111 405.6 536 43.7
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 9.9e-111 405.2 533 43.0
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 1.7e-110 404.4 542 44.5
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.7e-110 404.4 405 59.3
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.9e-110 403.7 503 45.1
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 8.3e-110 402.1 544 42.5
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 7.1e-109 399.1 541 44.0
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 7.1e-109 399.1 521 44.0
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 2.7e-108 397.1 512 44.3
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 6.6e-107 392.5 554 43.1
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 4.3e-106 389.8 521 44.3
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 9.5e-106 388.7 555 43.1
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 4.7e-105 386.3 430 52.8
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 1.8e-104 384.4 543 43.6
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 3.1e-104 383.6 524 43.3
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.6e-103 380.6 526 44.1
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 7.8e-100 369.0 533 43.9
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 1.9e-98 364.4 370 58.1
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.1e-97 360.9 525 44.4
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 8.1e-97 359.0 535 43.0
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.4e-96 358.2 434 48.8
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 1.8e-88 331.3 521 42.2
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 2.4e-88 330.9 380 47.4
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.5e-87 328.2 483 42.7
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 2.0e-87 327.8 532 41.4
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 7.6e-87 325.9 543 40.3
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.8e-83 314.7 517 36.9
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.5e-82 311.6 485 36.3
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 4.3e-82 310.1 487 37.0
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 7.4e-82 309.3 314 50.6
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.1e-81 307.8 465 43.0
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 6.2e-81 306.2 586 35.3
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 1.1e-80 305.4 454 40.5
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 2.4e-80 304.3 486 36.6
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 9.0e-80 302.4 437 44.9
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 2.0e-79 301.2 361 46.5
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 2.0e-79 301.2 313 51.8
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 6.7e-75 286.2 487 35.9
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 3.9e-67 260.4 545 32.7
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 2.0e-63 248.1 663 31.5
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 5.5e-61 240.0 211 59.7
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.1e-60 238.0 382 36.9
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 2.8e-57 227.6 371 39.1
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 1.1e-56 225.7 276 48.2
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.4e-56 224.6 276 45.7
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 6.7e-51 206.5 321 45.5
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.0e-50 204.9 218 51.8
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 2.2e-49 201.4 263 47.5
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.4e-45 188.7 206 48.5
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 1.8e-40 171.8 195 54.9
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 7.7e-39 166.4 219 50.2
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 7.7e-39 166.4 137 59.9
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 1.5e-37 162.2 116 62.9
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 1.9e-37 161.8 86 89.5
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 3.3e-34 151.0 123 61.0
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 3.3e-34 151.0 124 57.3
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 9.7e-34 149.4 306 34.3
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 6.3e-33 146.7 116 62.9
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.0e-30 139.4 120 49.2
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.7e-30 138.7 94 64.9
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 2.9e-30 137.9 97 62.9
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 3.8e-30 137.5 124 51.6
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.6e-28 132.1 218 36.2
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 2.1e-28 131.7 96 60.4
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 3.4e-26 124.4 503 26.4
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 1.1e-24 119.4 117 56.4
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.4e-24 119.0 99 58.6
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 4.1e-24 117.5 90 53.3
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 1.7e-22 112.1 100 51.0
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.2e-20 105.9 116 46.6
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 2.3e-19 101.7 80 55.0
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 2.3e-19 101.7 97 52.6
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.5e-18 99.0 175 31.4
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 5.7e-18 97.1 102 49.0
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.8e-16 92.0 114 38.6
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 2.4e-16 91.7 120 41.7
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 2.4e-16 91.7 96 53.1
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 1.2e-15 89.4 119 41.2
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 2.3e-14 85.1 77 45.5
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 9.5e-13 79.7 69 44.9
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.6e-12 79.0 69 43.5
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 8.0e-12 76.6 115 44.3
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.2e-11 73.9 75 45.3
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 1.2e-10 72.8 63 61.9
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 7.5e-10 70.1 108 41.7
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.5e-10 70.1 71 39.4
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 2.9e-09 68.2 48 64.6
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.9e-09 67.4 102 34.3
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.9e-09 67.4 102 34.3
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.9e-08 65.5 72 43.1
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 2.7e-07 61.6 54 59.3
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.7e-07 61.6 40 52.5
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.6e-07 60.8 107 27.1
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 6.0e-07 60.5 73 41.1
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 7.8e-07 60.1 42 61.9


User provided reference genes

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