Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 3.8e-151 539.7 769 100.0
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.1e-97 362.1 209 90.0
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.2e-96 358.6 212 87.7
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 2.7e-96 357.5 212 87.3
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.7e-96 357.5 212 87.3
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 3.5e-96 357.1 212 88.2
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 3.5e-96 357.1 210 88.6
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 4.5e-96 356.7 209 89.5
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.0e-95 355.5 209 89.5
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 1.0e-95 355.5 212 88.2
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 1.3e-95 355.1 210 87.6
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 2.2e-95 354.4 212 88.7
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 5.0e-95 353.2 211 85.8
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 1.1e-94 352.1 212 86.8
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 1.5e-94 351.7 210 85.7
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 2.5e-94 350.9 207 89.4
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 3.2e-94 350.5 212 86.3
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 4.2e-94 350.1 212 85.4
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 5.5e-94 349.7 221 85.1
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 5.5e-94 349.7 210 86.2
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 5.5e-94 349.7 212 86.3
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 7.2e-94 349.4 212 85.4
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 7.2e-94 349.4 212 87.7
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 7.2e-94 349.4 212 86.3
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 9.4e-94 349.0 208 87.5
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 9.4e-94 349.0 211 86.3
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 2.1e-93 347.8 210 84.8
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 2.1e-93 347.8 212 84.9
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 6.1e-93 346.3 209 86.6
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 6.1e-93 346.3 210 86.7
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 6.1e-93 346.3 212 84.4
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 1.0e-92 345.5 212 84.0
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.4e-92 345.1 213 85.4
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.8e-92 344.7 210 84.8
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 1.8e-92 344.7 212 84.9
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.8e-92 344.7 208 85.6
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.8e-92 344.7 212 84.9
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 2.3e-92 344.4 212 84.4
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 3.0e-92 344.0 212 84.0
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 4.0e-92 343.6 212 84.0
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 4.0e-92 343.6 210 85.7
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 4.0e-92 343.6 213 84.0
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.0e-92 343.6 212 83.0
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 5.2e-92 343.2 212 83.5
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 6.8e-92 342.8 212 83.5
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 6.8e-92 342.8 212 83.5
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.8e-92 342.4 208 87.0
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.8e-92 342.4 208 87.0
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 8.8e-92 342.4 203 88.2
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 2.6e-91 340.9 213 84.0
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.6e-91 340.9 213 84.0
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 2.6e-91 340.9 213 84.0
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 3.4e-91 340.5 212 83.0
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 3.4e-91 340.5 214 84.6
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 4.4e-91 340.1 211 83.4
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 5.7e-91 339.7 213 84.0
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.8e-91 339.0 212 82.1
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.8e-91 339.0 212 82.1
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 9.8e-91 339.0 212 84.0
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 9.8e-91 339.0 212 84.9
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-90 338.6 212 82.1
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 1.7e-90 338.2 212 84.0
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.7e-90 338.2 209 84.2
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.7e-90 338.2 220 82.7
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 2.2e-90 337.8 212 83.0
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.2e-90 337.8 212 82.1
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 2.2e-90 337.8 212 82.1
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 4.8e-90 336.7 213 83.6
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 4.8e-90 336.7 213 83.6
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 4.8e-90 336.7 212 83.0
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 4.8e-90 336.7 211 84.4
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 1.4e-89 335.1 213 84.0
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.8e-89 334.7 212 81.1
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 9.1e-89 332.4 212 81.6
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 1.6e-88 331.6 208 82.2
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 2.0e-88 331.3 211 83.4
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 3.5e-88 330.5 208 82.7
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 7.7e-88 329.3 208 81.7
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 2.9e-87 327.4 212 80.2
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.1e-86 325.5 207 81.6
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 2.5e-86 324.3 195 86.2
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 5.5e-86 323.2 196 86.2
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 4.7e-85 320.1 251 70.9
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 4.0e-84 317.0 202 82.7
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 4.0e-84 317.0 212 77.4
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 6.8e-84 316.2 212 77.4
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 9.8e-83 312.4 210 76.2
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 4.9e-82 310.1 213 76.1
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.8e-81 308.1 210 76.7
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 2.0e-80 304.7 181 87.8
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 4.5e-80 303.5 210 73.3
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 3.8e-79 300.4 192 82.3
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 1.5e-75 288.5 181 82.9
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 1.5e-75 288.5 212 70.3
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 2.6e-75 287.7 180 82.2
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 6.4e-74 283.1 180 81.1
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 3.5e-72 277.3 225 69.8
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 3.0e-71 274.2 158 94.3
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 4.3e-70 270.4 197 69.0
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.1e-69 268.1 192 71.4
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 3.1e-68 264.2 198 68.2
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 8.9e-68 262.7 196 68.4
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 6.4e-66 256.5 197 70.6
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.2e-61 242.3 186 72.0
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 1.1e-60 239.2 179 73.7
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 4.0e-60 237.3 171 76.0
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 1.1e-52 212.6 193 60.6
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.5e-43 182.2 156 61.5
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 1.4e-33 149.1 94 81.9
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 2.1e-32 145.2 115 62.6
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 8.1e-29 133.3 103 73.8
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 2.4e-28 131.7 203 42.4
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 2.4e-28 131.7 79 86.1
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 1.4e-25 122.5 72 91.7
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 2.5e-25 121.7 76 82.9
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 1.9e-22 112.1 207 35.3
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 4.3e-22 110.9 64 87.5
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 7.4e-22 110.2 107 58.9
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.7e-18 99.0 63 77.8
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.4e-17 95.9 178 37.1
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.2e-17 94.7 58 75.9
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 4.2e-17 94.4 56 82.1
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.2e-16 92.8 107 48.6
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 2.1e-16 92.0 63 77.8
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 2.3e-15 88.6 168 36.3
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 3.0e-15 88.2 66 66.7
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 3.7e-13 81.3 138 33.3
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 3.7e-13 81.3 138 33.3
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 4.8e-13 80.9 52 75.0
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.8e-12 79.0 159 36.5
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 6.1e-08 63.9 60 56.7
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 1.0e-07 63.2 36 83.3
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 1.8e-07 62.4 35 82.9


User provided reference genes

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