Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 0.0e+00 1422.5 699 100.0
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 0.0e+00 1140.6 712 78.2
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1117.1 706 76.2
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1114.8 700 76.4
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1113.6 711 77.2
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1112.1 706 76.2
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1110.1 713 75.7
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1109.7 712 76.5
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1109.0 700 76.1
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1103.6 713 76.9
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1101.7 709 76.2
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1101.3 706 75.2
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1099.3 713 74.1
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1093.2 706 75.2
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1091.6 711 74.8
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1087.4 711 74.1
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1086.6 707 74.8
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1086.6 707 75.0
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1083.9 710 75.2
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 0.0e+00 1081.6 701 74.8
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1079.7 710 75.1
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1079.3 710 74.9
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 0.0e+00 1079.3 709 73.9
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 0.0e+00 1077.0 699 74.0
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 0.0e+00 1077.0 705 74.6
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 0.0e+00 1075.5 713 73.8
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 9.6e-312 1072.8 708 73.9
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 9.6e-312 1072.8 705 74.5
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 1.9e-311 1072.0 707 74.5
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 5.7e-311 1070.5 700 74.9
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 1.6e-310 1068.9 712 73.3
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 6.2e-310 1067.0 706 73.7
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 8.0e-310 1066.6 717 73.9
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 1.8e-309 1065.4 694 74.4
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 3.1e-309 1064.7 710 73.5
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 8.9e-309 1063.1 717 74.3
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 1.2e-308 1062.8 698 73.2
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 1.5e-308 1062.4 701 74.0
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 1.5e-308 1062.4 705 73.6
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 3.4e-308 1061.2 717 74.2
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 2.2e-307 1058.5 772 68.8
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 4.9e-307 1057.4 704 73.3
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 6.4e-307 1057.0 698 73.1
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 7.1e-306 1053.5 717 73.6
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 2.7e-305 1051.6 714 72.0
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 4.6e-305 1050.8 698 72.6
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 5.1e-304 1047.3 710 71.8
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 1.1e-303 1046.2 709 71.4
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 1.9e-303 1045.4 704 72.6
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 9.5e-303 1043.1 707 72.6
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 9.5e-303 1043.1 702 72.8
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 6.8e-301 1036.9 708 70.9
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 2.6e-300 1035.0 716 72.8
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 7.6e-300 1033.5 707 71.9
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 1.3e-299 1032.7 705 71.3
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.3e-299 1032.7 702 71.8
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 1.7e-299 1032.3 739 69.0
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 1.4e-298 1029.2 702 71.9
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.2e-297 1026.2 728 70.1
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 3.5e-297 1024.6 716 72.1
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 1.7e-296 1022.3 701 70.9
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 1.7e-296 1022.3 716 71.1
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 1.5e-295 1019.2 709 70.9
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 1.2e-294 1016.1 729 70.0
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 5.8e-292 1007.3 697 71.0
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 7.6e-292 1006.9 700 70.7
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 9.9e-292 1006.5 691 71.8
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 3.8e-291 1004.6 697 70.7
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 6.4e-291 1003.8 700 71.0
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 6.4e-291 1003.8 691 71.6
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 3.2e-290 1001.5 703 70.4
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.6e-289 999.2 735 70.1
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 6.0e-289 997.3 705 69.4
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.0e-288 996.5 670 72.5
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 3.3e-287 991.5 691 71.2
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 4.3e-287 991.1 707 68.2
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 2.1e-286 988.8 703 69.4
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 1.4e-285 986.1 711 68.9
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 3.1e-285 984.9 706 68.8
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.0e-284 982.2 682 69.9
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 4.2e-282 974.5 713 69.0
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 7.9e-281 970.3 711 67.8
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 9.6e-279 963.4 769 63.2
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 3.2e-274 948.3 763 63.4
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 5.5e-274 947.6 689 66.9
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 2.8e-270 935.3 706 65.7
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 3.7e-270 934.9 707 67.8
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 1.2e-268 929.9 716 64.2
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 4.8e-262 907.9 589 74.7
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.4e-261 905.6 703 64.4
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 1.3e-259 899.8 667 66.3
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 1.4e-258 896.3 595 73.1
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 5.1e-256 887.9 559 75.8
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 5.5e-250 867.8 715 63.1
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 3.6e-249 865.1 717 61.1
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 5.0e-243 844.7 715 60.8
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 3.5e-236 822.0 548 73.0
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 3.4e-223 778.9 520 74.2
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 5.9e-220 768.1 680 56.0
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 9.8e-215 750.7 682 55.9
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 2.5e-194 682.9 731 53.9
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 3.3e-194 682.6 683 51.0
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.4e-189 667.2 449 73.1
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 1.6e-185 653.7 883 42.7
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 1.2e-172 610.9 844 42.3
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 1.3e-166 590.9 678 47.5
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 3.8e-166 589.3 489 58.7
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 5.4e-165 585.5 384 71.6
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 8.2e-145 518.5 734 42.5
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 3.1e-144 516.5 742 42.3
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 1.0e-134 485.0 694 40.3
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 4.2e-133 479.6 750 39.7
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 9.7e-130 468.4 809 37.7
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 3.2e-117 426.8 336 68.8
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 8.3e-113 412.1 304 68.8
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 1.4e-107 394.8 358 57.3
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 3.6e-76 290.4 313 52.4
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.2e-68 265.4 201 65.2
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 3.8e-65 253.8 187 66.3
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 7.1e-56 223.0 132 81.1
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 3.3e-53 214.2 164 63.4
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 6.0e-39 166.8 102 76.5
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 5.7e-37 160.2 106 72.6
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 2.1e-36 158.3 174 54.0
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 5.0e-33 147.1 116 62.1
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 8.7e-30 136.3 100 68.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 6.9e-27 126.7 94 59.6
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 3.3e-21 107.8 61 83.6
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 2.8e-20 104.8 147 44.2
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 2.5e-16 91.7 61 67.2
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 1.8e-14 85.5 59 67.8
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 2.8e-12 78.2 62 62.9
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 3.7e-12 77.8 42 83.3
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 2.0e-10 72.0 47 72.3
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 3.2e-08 64.7 58 43.1


User provided reference genes

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