Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 0.0e+00 1203.3 589 100.0
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 5.1e-273 944.1 592 76.4
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 4.6e-266 921.0 593 75.0
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 4.6e-266 921.0 592 74.2
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 6.0e-266 920.6 596 74.8
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 4.3e-264 914.4 592 74.0
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 9.6e-264 913.3 595 73.8
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 2.8e-263 911.8 592 74.3
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 4.8e-263 911.0 592 74.2
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 1.3e-260 902.9 593 72.8
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 1.4e-259 899.4 595 73.3
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 2.4e-259 898.7 593 73.2
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 7.1e-259 897.1 593 73.7
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 3.5e-258 894.8 593 72.8
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 6.0e-258 894.0 593 73.9
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 5.6e-256 887.5 592 70.9
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.6e-255 885.9 592 72.3
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 3.7e-255 884.8 597 73.2
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 4.8e-255 884.4 592 71.1
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 1.1e-254 883.2 593 71.5
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 6.9e-254 880.6 587 72.6
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 1.5e-253 879.4 600 71.5
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 3.4e-253 878.2 594 71.2
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 7.6e-253 877.1 593 71.0
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 3.2e-251 871.7 594 70.2
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 3.0e-249 865.1 631 67.4
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 1.5e-248 862.8 593 69.8
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 5.7e-248 860.9 593 70.7
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 9.7e-248 860.1 581 71.8
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 2.1e-247 859.0 596 70.8
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 3.1e-246 855.1 597 71.4
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 9.0e-246 853.6 598 69.1
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 1.3e-244 849.7 593 70.2
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 7.2e-243 844.0 630 68.1
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 1.2e-242 843.2 592 69.8
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 6.1e-242 840.9 602 70.1
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 6.1e-242 840.9 668 65.1
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 3.9e-241 838.2 595 68.6
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 5.1e-241 837.8 592 68.1
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 7.4e-240 833.9 592 68.2
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 1.3e-239 833.2 632 66.8
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 1.6e-239 832.8 587 67.8
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 3.7e-239 831.6 594 67.5
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 6.3e-239 830.9 592 67.2
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 1.4e-238 829.7 592 68.9
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 2.4e-238 828.9 594 67.8
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 3.1e-238 828.6 596 68.6
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 6.5e-236 820.8 593 68.8
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 5.5e-235 817.8 616 65.9
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 3.6e-234 815.1 556 72.7
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 6.7e-233 810.8 590 67.8
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 7.4e-232 807.4 646 63.3
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 2.4e-230 802.4 592 65.7
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 6.9e-230 800.8 592 65.5
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 3.4e-229 798.5 548 71.0
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 2.9e-228 795.4 570 66.8
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 4.7e-226 788.1 587 66.1
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 1.1e-224 783.5 596 64.8
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 2.0e-224 782.7 594 65.0
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 4.4e-224 781.6 594 64.8
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 1.3e-223 780.0 595 64.7
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 2.8e-223 778.9 590 65.6
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 1.4e-222 776.5 595 65.2
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 1.8e-222 776.2 595 65.0
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 9.1e-222 773.9 595 63.5
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 1.2e-221 773.5 593 64.6
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 1.7e-220 769.6 533 70.9
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 5.0e-220 768.1 587 65.4
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 5.5e-219 764.6 591 63.5
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 5.5e-219 764.6 548 69.3
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 4.7e-218 761.5 598 63.0
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 8.8e-217 757.3 592 63.2
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 3.3e-216 755.4 594 63.1
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 5.7e-216 754.6 592 63.2
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 2.2e-215 752.7 580 64.8
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 4.8e-215 751.5 596 61.9
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 2.0e-213 746.1 531 68.9
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 3.5e-213 745.3 591 61.9
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 1.0e-212 743.8 590 61.9
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 3.8e-212 741.9 530 69.2
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 7.2e-211 737.6 597 61.3
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 9.4e-211 737.3 593 61.7
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 1.4e-209 733.4 587 63.5
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 1.8e-209 733.0 593 61.2
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 4.4e-208 728.4 654 57.5
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 2.2e-207 726.1 520 70.2
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 4.8e-207 724.9 685 55.0
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 6.3e-207 724.5 598 62.2
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 5.9e-205 718.0 598 59.2
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.0e-204 717.2 484 71.3
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 8.6e-204 714.1 607 62.1
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 8.6e-204 714.1 510 69.8
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 1.8e-201 706.4 571 62.5
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 1.6e-197 693.3 609 57.8
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 3.8e-196 688.7 559 61.0
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 6.0e-165 585.1 525 57.9
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 3.9e-148 529.3 379 66.8
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 5.5e-142 508.8 389 65.3
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 7.9e-133 478.4 608 45.1
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 4.2e-126 456.1 438 52.1
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 2.4e-121 440.3 595 41.7
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 3.3e-107 393.3 529 44.6
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 9.7e-99 365.2 243 71.2
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 1.2e-80 305.1 293 56.0
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 1.7e-79 301.2 204 69.6
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 2.3e-76 290.8 251 54.6
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 9.8e-75 285.4 617 33.7
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.6e-61 241.5 167 66.5
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 1.4e-44 185.3 163 59.5
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.5e-38 165.2 132 64.4
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 2.2e-34 151.4 109 60.6
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 3.9e-31 140.6 118 66.9
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 5.8e-27 126.7 79 72.2
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 6.0e-24 116.7 64 81.2
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 1.6e-16 92.0 401 24.7
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 1.1e-14 85.9 75 58.7
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 4.3e-14 84.0 54 72.2
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 2.2e-10 71.6 44 68.2
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 6.5e-10 70.1 55 52.7
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 8.5e-10 69.7 393 22.1
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 2.5e-09 68.2 435 21.1
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 4.2e-09 67.4 378 21.7
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 7.2e-09 66.6 363 22.6
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 7.2e-09 66.6 437 22.0
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 2.1e-08 65.1 429 21.2
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 2.1e-08 65.1 363 21.2
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 3.6e-08 64.3 437 21.7
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 3.6e-08 64.3 362 21.5
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 4.6e-08 63.9 367 21.5
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 4.6e-08 63.9 438 21.9
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 7.9e-08 63.2 374 21.1
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 1.0e-07 62.8 386 21.0
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 1.4e-07 62.4 387 21.2
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 1.8e-07 62.0 355 21.7
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 2.3e-07 61.6 374 21.4
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 2.3e-07 61.6 372 20.7
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 2.3e-07 61.6 360 21.1
Eucgr.H03129 Eucalyptus grandis HOM05D006440 ORTHO05D003987 2.3e-07 61.6 111 37.8
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 2.3e-07 61.6 387 20.4
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 3.0e-07 61.2 360 21.1
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 3.0e-07 61.2 368 20.9
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 3.9e-07 60.8 363 20.9
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 3.9e-07 60.8 419 19.3
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 5.1e-07 60.5 362 21.5
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 5.1e-07 60.5 356 20.8
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 5.1e-07 60.5 386 21.2
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 5.1e-07 60.5 363 20.9
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 6.7e-07 60.1 363 20.1
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 8.8e-07 59.7 33 78.8
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 8.8e-07 59.7 394 20.8
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 8.8e-07 59.7 361 20.8
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 8.8e-07 59.7 363 19.0
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 1.1e-06 59.3 362 21.0
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 1.1e-06 59.3 372 20.4
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 1.1e-06 59.3 370 21.1
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 1.1e-06 59.3 362 21.5
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 1.1e-06 59.3 367 20.7
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 1.5e-06 58.9 363 20.4
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 1.5e-06 58.9 369 20.9
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 2.0e-06 58.5 380 21.1
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 2.0e-06 58.5 63 47.6
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 2.0e-06 58.5 434 21.2
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 2.0e-06 58.5 434 21.2
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 2.5e-06 58.2 362 20.7
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 2.5e-06 58.2 361 20.5
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 3.3e-06 57.8 360 21.1
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 4.3e-06 57.4 360 20.6
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 4.3e-06 57.4 369 21.1
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 5.7e-06 57.0 40 62.5
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 7.4e-06 56.6 360 20.6
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 7.4e-06 56.6 360 20.6
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 7.4e-06 56.6 364 20.9
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 7.4e-06 56.6 363 20.4
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 7.4e-06 56.6 370 21.1


User provided reference genes

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