Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 3.4e-256 887.9 465 100.0
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 3.7e-178 628.6 461 69.4
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 1.6e-117 427.2 427 55.0
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 1.7e-114 417.2 403 54.1
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 2.2e-114 416.8 400 53.8
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 5.0e-114 415.6 415 53.5
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 1.2e-112 411.0 399 53.1
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 2.1e-112 410.2 419 51.8
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 2.7e-112 409.8 406 53.9
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 7.9e-112 408.3 422 51.7
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 1.0e-111 407.9 422 52.6
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 2.3e-111 406.8 414 52.9
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 8.8e-111 404.8 403 53.6
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 2.0e-110 403.7 418 50.7
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 2.0e-110 403.7 422 51.2
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 2.0e-110 403.7 426 51.6
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 5.7e-110 402.1 472 49.2
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 7.4e-110 401.7 461 47.7
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 9.7e-110 401.4 413 52.1
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 1.3e-109 401.0 403 50.6
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 1.3e-109 401.0 427 51.3
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 1.7e-109 400.6 461 47.9
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 2.2e-109 400.2 402 51.0
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 2.8e-109 399.8 417 50.6
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 3.7e-109 399.4 381 55.1
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 6.3e-109 398.7 393 53.4
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 8.2e-109 398.3 400 52.0
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 2.4e-108 396.7 387 53.2
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 3.1e-108 396.4 435 49.2
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 5.3e-108 395.6 398 52.3
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 1.5e-107 394.0 387 54.0
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.5e-107 394.0 380 53.7
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 2.6e-107 393.3 416 51.2
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 5.9e-107 392.1 423 51.8
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 7.7e-107 391.7 413 50.6
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 1.0e-106 391.3 391 53.7
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 1.3e-106 391.0 424 50.7
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 1.7e-106 390.6 421 49.9
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 2.2e-106 390.2 396 50.5
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 2.2e-106 390.2 422 49.8
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 6.5e-106 388.7 396 53.5
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 6.5e-106 388.7 399 49.9
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 1.1e-105 387.9 402 50.7
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 1.4e-105 387.5 461 46.2
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 1.4e-105 387.5 395 53.7
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 1.9e-105 387.1 413 51.3
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 3.2e-105 386.3 461 46.2
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 5.5e-105 385.6 420 50.2
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 7.2e-105 385.2 431 51.3
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 7.2e-105 385.2 431 51.3
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 9.4e-105 384.8 375 52.0
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 1.6e-104 384.0 401 50.6
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 2.1e-104 383.6 448 47.3
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 3.6e-104 382.9 459 47.9
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 1.0e-103 381.3 401 49.9
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 1.0e-103 381.3 420 49.8
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 1.8e-103 380.6 479 47.0
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 1.8e-103 380.6 424 47.6
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 2.3e-103 380.2 404 49.8
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 3.0e-103 379.8 437 48.5
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 3.9e-103 379.4 423 49.6
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 3.9e-103 379.4 450 46.9
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 3.9e-103 379.4 411 50.9
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 5.1e-103 379.0 400 48.8
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 5.1e-103 379.0 431 51.0
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 1.5e-102 377.5 380 51.8
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 1.5e-102 377.5 399 49.9
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 1.7e-101 374.0 447 46.8
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 3.7e-101 372.9 463 46.2
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 3.7e-101 372.9 382 51.8
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 6.3e-101 372.1 416 48.1
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 1.1e-100 371.3 421 48.7
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 1.6e-99 367.5 442 45.5
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 1.0e-98 364.8 316 58.2
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 2.9e-98 363.2 399 48.6
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 2.9e-98 363.2 514 41.2
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 5.0e-98 362.5 399 49.6
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 5.0e-98 362.5 425 47.8
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 2.5e-97 360.1 424 47.6
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 2.5e-97 360.1 401 48.6
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 3.2e-97 359.8 462 45.0
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 5.5e-97 359.0 401 47.9
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 1.2e-96 357.8 399 49.1
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 1.6e-96 357.5 401 48.4
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 2.1e-96 357.1 421 47.5
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 8.0e-96 355.1 425 47.1
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 8.0e-96 355.1 426 46.5
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 5.7e-94 349.0 350 52.3
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 1.1e-92 344.7 381 48.8
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 1.4e-92 344.4 387 47.5
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 1.4e-92 344.4 408 45.8
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 1.8e-92 344.0 296 59.5
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 2.0e-91 340.5 454 44.3
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 2.7e-91 340.1 467 43.0
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 7.7e-91 338.6 362 51.4
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 6.8e-87 325.5 353 50.4
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 2.0e-86 323.9 440 43.0
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 1.7e-85 320.9 252 61.9
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 1.7e-85 320.9 404 45.3
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 1.7e-77 294.3 354 45.8
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 1.7e-77 294.3 354 45.8
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 1.8e-76 290.8 270 55.9
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 2.0e-75 287.3 244 59.4
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 8.0e-72 275.4 464 36.4
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 4.0e-71 273.1 455 40.2
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 6.8e-63 245.7 213 58.2
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 2.6e-62 243.8 341 41.6
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 6.4e-61 239.2 334 41.6
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 2.0e-54 217.6 271 45.4
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 2.9e-53 213.8 237 48.9
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 6.8e-47 192.6 390 35.4
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 1.1e-39 168.7 173 50.3
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 6.9e-39 166.0 242 43.8
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 9.9e-38 162.2 426 29.8
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 3.5e-35 153.7 160 50.0
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 3.5e-35 153.7 160 50.0
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.3e-29 135.2 273 35.2
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 2.7e-27 127.5 108 55.6
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 3.5e-27 127.1 166 44.6
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 1.9e-25 121.3 97 59.8
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 9.9e-22 109.0 180 40.0
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 4.6e-19 100.1 116 44.8
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 7.9e-19 99.4 132 43.9
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 3.0e-18 97.4 171 33.9
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 1.4e-15 88.6 149 40.9
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 6.5e-13 79.7 149 36.9
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.6e-11 75.1 63 57.1
PRCOL_00001836 Prasinoderma coloniale HOM05D005933 ORTHO05D007366 4.6e-11 73.6 298 25.2
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 4.3e-09 67.0 90 44.4
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-08 65.1 41 68.3
Rhsim03G0024000 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.4e-07 62.0 53 58.5
Rhsim03G0022600 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.8e-07 61.6 53 58.5
Zm00001eb009280 Zea mays HOM05D063003 ORTHO05D007366 4.5e-06 57.0 35 74.3
Zm00001eb365970 Zea mays HOM05D063003 ORTHO05D007366 4.5e-06 57.0 35 74.3


User provided reference genes

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