Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 8.5e-308 1059.7 600 100.0
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.0e-228 797.0 609 74.9
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.6e-226 789.6 609 74.9
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 2.0e-171 606.7 625 56.6
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 4.1e-161 572.4 624 55.9
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 2.5e-158 563.1 626 55.0
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 3.6e-157 559.3 636 55.0
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 5.2e-156 555.4 618 53.6
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 6.8e-156 555.1 627 53.9
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 8.8e-156 554.7 626 54.0
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.5e-155 553.9 618 53.4
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 4.4e-155 552.4 622 54.2
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 9.8e-155 551.2 631 54.4
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.3e-154 550.8 626 54.2
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.7e-154 550.4 626 53.7
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 3.7e-154 549.3 616 54.1
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 4.8e-154 548.9 605 56.0
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 8.3e-154 548.1 626 53.4
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.4e-153 547.4 624 53.0
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.4e-153 547.4 624 53.0
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 7.0e-153 545.0 621 52.2
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.0e-152 543.5 618 52.6
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 2.0e-152 543.5 623 52.8
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.9e-152 542.0 632 52.1
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.9e-152 542.0 620 52.9
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-151 540.8 620 52.7
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 2.3e-151 540.0 620 53.2
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.8e-151 539.3 620 52.6
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 8.6e-151 538.1 625 55.0
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 3.3e-150 536.2 618 53.1
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 5.5e-150 535.4 626 52.7
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 1.2e-149 534.3 620 52.4
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 2.1e-149 533.5 627 52.8
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 3.6e-149 532.7 619 51.9
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 6.1e-149 531.9 605 52.2
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.4e-148 530.8 607 57.0
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 2.3e-148 530.0 611 53.2
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 5.2e-148 528.9 616 54.7
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 2.0e-147 526.9 631 54.2
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 2.6e-147 526.6 621 53.3
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 4.4e-147 525.8 621 54.1
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 7.5e-147 525.0 567 55.0
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 7.5e-147 525.0 618 52.8
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.3e-146 524.2 619 52.5
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 1.7e-146 523.9 625 51.4
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 3.7e-146 522.7 617 52.4
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 6.3e-146 521.9 527 58.1
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 6.3e-146 521.9 614 54.7
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.4e-145 520.8 628 50.6
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.8e-145 520.4 619 52.0
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.8e-145 520.4 628 50.6
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.4e-145 520.0 625 50.6
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 4.1e-145 519.2 619 52.0
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 5.4e-145 518.8 617 55.1
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 9.2e-145 518.1 637 50.2
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 2.0e-144 516.9 616 51.9
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 2.7e-144 516.5 625 51.4
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.5e-144 515.8 611 51.6
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 5.9e-144 515.4 561 54.5
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.0e-143 514.6 618 50.3
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.7e-143 513.8 619 52.0
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.3e-143 513.5 619 51.4
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 2.9e-143 513.1 619 51.5
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 6.6e-143 511.9 559 54.0
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.9e-142 510.4 620 52.4
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 2.5e-142 510.0 616 51.8
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 9.5e-142 508.1 622 51.6
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 2.1e-141 506.9 632 50.9
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.8e-141 506.5 635 49.1
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 2.8e-141 506.5 632 49.2
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 1.4e-140 504.2 609 50.9
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 5.2e-140 502.3 626 50.5
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 6.8e-140 501.9 618 52.6
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 5.8e-139 498.8 617 49.4
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 9.8e-139 498.0 611 53.0
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 9.8e-139 498.0 622 48.9
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.7e-138 496.1 616 54.2
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 8.3e-138 495.0 619 49.9
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.1e-137 494.6 610 52.8
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 2.4e-137 493.4 610 52.5
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 2.4e-137 493.4 624 51.8
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 9.2e-137 491.5 605 55.7
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 1.2e-136 491.1 614 51.6
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 2.0e-136 490.3 625 49.4
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.7e-136 490.0 596 51.3
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 6.0e-136 488.8 630 49.7
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.0e-135 488.0 616 49.5
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.3e-135 487.6 611 52.2
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 1.3e-135 487.6 618 49.8
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.7e-135 487.3 618 49.0
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 1.7e-135 487.3 618 49.7
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 2.3e-135 486.9 607 48.8
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.3e-135 486.9 611 48.8
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.9e-135 486.1 617 51.9
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 6.6e-135 485.3 616 53.2
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 6.6e-135 485.3 605 50.2
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 8.6e-135 485.0 614 50.8
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.1e-134 484.6 550 52.5
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.1e-134 484.6 550 52.5
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.9e-134 483.8 616 51.1
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.9e-134 483.8 566 52.8
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 2.5e-134 483.4 635 49.8
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 3.3e-134 483.0 601 50.9
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 4.3e-134 482.6 608 49.3
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 4.3e-134 482.6 609 50.1
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 7.3e-134 481.9 567 52.0
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.2e-133 481.1 612 51.0
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 2.1e-133 480.3 608 50.3
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 2.1e-133 480.3 608 50.3
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 3.6e-133 479.6 605 48.9
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 4.7e-133 479.2 614 48.7
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.4e-132 477.6 559 51.3
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.4e-132 477.6 567 50.1
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 4.0e-132 476.1 616 49.8
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 4.4e-131 472.6 609 48.3
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 5.8e-131 472.2 622 49.4
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 5.8e-131 472.2 614 48.0
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.2e-130 470.3 623 48.8
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.7e-130 469.5 614 47.9
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 6.4e-130 468.8 570 51.2
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-129 468.0 614 47.2
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.1e-129 466.1 614 47.4
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 5.4e-129 465.7 617 48.9
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.2e-128 464.5 560 50.5
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 3.0e-127 459.9 543 51.2
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.5e-126 457.6 568 50.4
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 7.3e-126 455.3 612 48.4
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 8.9e-124 448.4 543 50.5
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.2e-123 448.0 631 48.5
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.5e-123 447.6 578 47.6
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.4e-123 446.0 612 46.1
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.3e-122 444.5 618 45.6
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.4e-121 441.0 566 48.4
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 1.9e-121 440.7 626 44.4
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 2.4e-121 440.3 580 47.8
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 1.9e-118 430.6 526 50.6
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.3e-118 429.5 614 45.8
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.6e-117 427.6 614 45.0
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.1e-117 427.2 635 46.3
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.1e-116 423.3 597 48.9
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 5.2e-116 422.5 490 51.2
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 6.8e-116 422.2 583 48.9
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 2.0e-115 420.6 607 46.0
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 2.2e-114 417.2 621 45.4
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 4.8e-109 399.4 542 46.5
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.8e-109 399.4 619 43.5
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 3.4e-107 393.3 568 43.5
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 6.4e-106 389.0 552 45.1
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.4e-105 387.9 623 43.0
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 9.9e-99 365.2 617 40.4
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.3e-79 300.8 581 38.2
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 6.3e-77 292.7 274 58.4
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 5.9e-75 286.2 551 37.9
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 3.4e-67 260.4 367 46.3
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 5.9e-67 259.6 230 62.2
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 1.7e-66 258.1 358 45.5
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 3.2e-65 253.8 378 43.9
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 3.6e-64 250.4 360 45.6
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 1.0e-63 248.8 610 35.6
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 6.3e-61 239.6 262 53.4
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.2e-56 225.3 299 45.8
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 2.2e-50 204.5 590 31.9
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 8.5e-50 202.6 457 36.1
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 2.2e-45 188.0 551 32.8
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 3.9e-26 124.0 114 52.6
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 2.5e-25 121.3 77 75.3
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.8e-23 115.2 141 51.1
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 7.5e-22 109.8 107 47.7
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 4.6e-19 100.5 77 64.9
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 9.5e-17 92.8 132 37.9
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.4e-15 89.0 74 60.8
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.0e-14 85.1 159 40.9
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 7.5e-14 83.2 282 26.2
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.4e-12 78.2 78 57.7
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 7.8e-11 73.2 61 52.5
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 8.6e-10 69.7 61 57.4
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 1.5e-09 68.9 346 26.6
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 1.5e-06 58.9 508 26.8
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 4.4e-06 57.4 74 50.0


User provided reference genes

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