Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0641200 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D004643 2.0e-179 632.5 359 100.0
Zm00001eb115300 Zea mays HOM05D002762 ORTHO05D004643 3.3e-105 386.0 333 70.0
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 3.1e-55 219.9 329 41.3
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 6.4e-53 212.2 344 39.8
Os10g0148800 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D004643 3.2e-52 209.9 328 41.2
Peaxi162Scf00769g00116 Petunia axillaris HOM05D002762 ORTHO05D004643 1.6e-51 207.6 329 38.9
HanXRQChr03g0079911 Helianthus annuus HOM05D002762 ORTHO05D004643 3.5e-51 206.5 329 40.1
Lalb_Chr20g0118281 Lupinus albus HOM05D002762 ORTHO05D004643 1.0e-50 204.9 329 38.6
arahy.Tifrunner.gnm1.ann1.6S26PP Arachis hypogaea HOM05D002762 ORTHO05D004643 1.3e-50 204.5 328 42.1
arahy.Tifrunner.gnm1.ann1.Q6K1JG Arachis hypogaea HOM05D002762 ORTHO05D004643 2.3e-50 203.8 328 42.1
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 5.1e-50 202.6 329 38.3
Hma1.2p1_2025F.1_g311500 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 1.1e-49 201.4 331 38.4
GSVIVG01017859001 Vitis vinifera HOM05D002762 ORTHO05D004643 1.9e-49 200.7 328 38.4
ECA240G4644 Erigeron canadensis HOM05D002762 ORTHO05D004643 5.6e-49 199.1 324 37.3
PGSC0003DMG400030790 Solanum tuberosum HOM05D002762 ORTHO05D004643 5.6e-49 199.1 329 37.7
CSS0044156 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 7.4e-49 198.7 329 38.3
Psat1g185320 Pisum sativum HOM05D002762 ORTHO05D004643 9.6e-49 198.4 327 37.6
Lsat_1_v5_gn_5_47620 Lactuca sativa HOM05D002762 ORTHO05D004643 1.3e-48 198.0 328 37.5
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 1.6e-48 197.6 330 37.9
Haze_01003 Corylus avellana HOM05D002762 ORTHO05D004643 1.6e-48 197.6 328 41.5
Sopen06g019510 Solanum pennellii HOM05D002762 ORTHO05D004643 1.6e-48 197.6 329 37.4
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 1.6e-48 197.6 327 37.0
Medtr2g021030 Medicago truncatula HOM05D002762 ORTHO05D004643 2.8e-48 196.8 327 40.4
Nitab4.5_0002295g0030 Nicotiana tabacum HOM05D002762 ORTHO05D004643 2.8e-48 196.8 299 40.1
CAN.G1247.4 Capsicum annuum HOM05D002762 ORTHO05D004643 3.7e-48 196.4 329 37.1
TAR362G1268 Trochodendron aralioides HOM05D002762 ORTHO05D004643 3.7e-48 196.4 329 38.6
Glyma.13G211600 Glycine max HOM05D002762 ORTHO05D004643 4.8e-48 196.1 329 42.2
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 4.8e-48 196.1 333 38.7
PGR031G1661 Punica granatum HOM05D002762 ORTHO05D004643 4.8e-48 196.1 355 40.0
Aa31LG9G1950 Aethionema arabicum HOM05D002762 ORTHO05D004643 6.2e-48 195.7 328 37.5
ATR0626G340 Amborella trichopoda HOM05D002762 ORTHO05D004643 6.2e-48 195.7 340 41.5
Cfa015545 Carpinus fangiana HOM05D002762 ORTHO05D004643 6.2e-48 195.7 328 41.5
vmacro08247 Vaccinium macrocarpon HOM05D002762 ORTHO05D004643 6.2e-48 195.7 332 37.7
Sed0001779 Sechium edule HOM05D002762 ORTHO05D004643 8.1e-48 195.3 297 39.4
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 1.1e-47 194.9 297 39.7
A03p49130 Brassica napus HOM05D002762 ORTHO05D004643 1.1e-47 194.9 333 36.9
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 1.1e-47 194.9 331 38.1
VMungo0540G1770 Vigna mungo HOM05D002762 ORTHO05D004643 1.4e-47 194.5 328 37.8
BolC7t45238H Brassica oleracea HOM05D002762 ORTHO05D004643 1.8e-47 194.1 329 36.5
BcaC06g33410 Brassica carinata HOM05D002762 ORTHO05D004643 3.1e-47 193.4 329 36.5
C07p47170 Brassica napus HOM05D002762 ORTHO05D004643 3.1e-47 193.4 329 36.5
BraA03t14008Z Brassica rapa HOM05D002762 ORTHO05D004643 4.0e-47 193.0 329 36.5
DCAR_030582 Daucus carota HOM05D002762 ORTHO05D004643 4.0e-47 193.0 328 40.5
Lj3C805G9 Lonicera japonica HOM05D002762 ORTHO05D004643 1.2e-46 191.4 330 41.2
ClCG06G005660 Citrullus lanatus HOM05D002762 ORTHO05D004643 2.6e-46 190.3 296 38.9
CDE05G1517 Ceratophyllum demersum HOM05D002762 ORTHO05D004643 3.4e-46 189.9 328 35.4
MSTRG.3976 Avicennia marina HOM05D002762 ORTHO05D004643 4.5e-46 189.5 331 36.6
MELO3C021388.2 Cucumis melo HOM05D002762 ORTHO05D004643 4.5e-46 189.5 328 35.4
TWI73G1094 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 1.3e-45 188.0 339 39.5
HanXRQChr08g0226481 Helianthus annuus HOM05D002762 ORTHO05D004643 1.7e-45 187.6 328 36.9
MD16G1180300 Malus domestica HOM05D002762 ORTHO05D004643 3.8e-45 186.4 329 37.1
SEGI_13295 Sequoiadendron giganteum HOM05D002762 ORTHO05D004643 3.8e-45 186.4 329 40.7
Actinidia40216 Actinidia chinensis HOM05D002762 ORTHO05D004643 1.9e-44 184.1 329 37.7
Cc03_g02820 Coffea canephora HOM05D002762 ORTHO05D004643 4.2e-44 183.0 333 39.6
QL06p006068 Quercus lobata HOM05D002762 ORTHO05D004643 7.1e-44 182.2 329 40.1
CANSAT78G1359 Cannabis sativa HOM05D002762 ORTHO05D004643 4.6e-43 179.5 329 34.7
MD13G1179300 Malus domestica HOM05D002762 ORTHO05D004643 7.9e-43 178.7 328 37.5
Duzib151G0782 Durio zibethinus HOM05D002762 ORTHO05D004643 2.3e-42 177.2 337 34.4
Sc19g0004700 Simmondsia chinensis HOM05D002762 ORTHO05D004643 2.3e-42 177.2 297 42.8
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 3.9e-42 176.4 328 36.0
arahy.Tifrunner.gnm1.ann1.L75CTN Arachis hypogaea HOM05D002762 ORTHO05D004643 5.1e-42 176.0 297 36.7
Prupe.1G147900 Prunus persica HOM05D002762 ORTHO05D004643 5.1e-42 176.0 331 34.4
Migut.G00244 Erythranthe guttata HOM05D002762 ORTHO05D004643 6.7e-42 175.6 328 43.9
VMungo1215G0792 Vigna mungo HOM05D002762 ORTHO05D004643 6.7e-42 175.6 297 37.7
arahy.Tifrunner.gnm1.ann1.EJ0XN1 Arachis hypogaea HOM05D002762 ORTHO05D004643 1.9e-41 174.1 297 36.0
CsaV3_6G005490 Cucumis sativus L. HOM05D002762 ORTHO05D004643 2.5e-41 173.7 287 36.2
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 2.5e-41 173.7 328 35.7
Thecc.04G271300 Theobroma cacao HOM05D002762 ORTHO05D004643 3.3e-41 173.3 298 37.2
PSO302G0133 Papaver somniferum HOM05D002762 ORTHO05D004643 5.7e-41 172.6 334 44.0
SGA_v2.0_scaffold237G43847 Striga asiatica HOM05D002762 ORTHO05D004643 5.7e-41 172.6 298 43.6
FAN22G0648 Fragaria x ananassa HOM05D002762 ORTHO05D004643 7.4e-41 172.2 330 33.3
Actinidia23462 Actinidia chinensis HOM05D002762 ORTHO05D004643 1.3e-40 171.4 284 38.0
CiPaw.01G157300 Carya illinoinensis HOM05D002762 ORTHO05D004643 2.1e-40 170.6 282 42.9
Duzib052G0700 Durio zibethinus HOM05D002762 ORTHO05D004643 3.7e-40 169.9 330 33.9
Hma1.2p1_0511F.1_g169210 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 4.8e-40 169.5 333 35.1
Lj6g0020038 Lotus japonicus HOM05D002762 ORTHO05D004643 6.2e-40 169.1 281 36.7
HPP92_016898 Vanilla planifolia HOM05D000144 ORTHO05D004643 1.1e-39 168.3 301 45.2
Glyma.17G019800 Glycine max HOM05D002762 ORTHO05D004643 1.8e-39 167.5 328 33.5
FAN17G2967 Fragaria x ananassa HOM05D002762 ORTHO05D004643 2.4e-39 167.2 327 33.3
PSO170G0016 Papaver somniferum HOM05D002762 ORTHO05D004643 9.0e-39 165.2 331 42.9
RcHm_v2.0_Chr4g0419291 Rosa chinensis HOM05D002762 ORTHO05D004643 9.0e-39 165.2 327 33.3
Eucgr.B01185 Eucalyptus grandis HOM05D002762 ORTHO05D004643 2.6e-38 163.7 282 37.9
FAN12G3553 Fragaria x ananassa HOM05D002762 ORTHO05D004643 4.5e-38 162.9 326 33.1
Gohir.D09G232700 Gossypium hirsutum HOM05D002762 ORTHO05D004643 4.5e-38 162.9 328 32.6
Gorai.006G255600 Gossypium raimondii HOM05D002762 ORTHO05D004643 4.5e-38 162.9 328 32.6
FvH4_4g14060 Fragaria vesca HOM05D002762 ORTHO05D004643 1.0e-37 161.8 326 32.8
Gohir.A09G231600 Gossypium hirsutum HOM05D002762 ORTHO05D004643 1.0e-37 161.8 328 32.6
Dinv44461 Davidia involucrata HOM05D002762 ORTHO05D004643 1.3e-37 161.4 293 39.2
COL.COLO4_13978 Corchorus olitorius HOM05D002762 ORTHO05D004643 1.7e-37 161.0 328 32.6
SalBow2G0360 Salvia bowleyana HOM05D002762 ORTHO05D004643 1.7e-37 161.0 283 37.8
SalBow2G3267 Salvia bowleyana HOM05D002762 ORTHO05D004643 2.2e-37 160.6 285 37.5
THA.LOC104802549 Tarenaya hassleriana HOM05D002762 ORTHO05D004643 6.5e-37 159.1 281 38.4
Thhalv10024700m.g Eutrema salsugineum HOM05D002762 ORTHO05D004643 3.2e-36 156.8 280 36.4
Carub.0007s2643 Capsella rubella HOM05D002762 ORTHO05D004643 5.5e-36 156.0 276 37.0
Migut.G00246 Erythranthe guttata HOM05D002762 ORTHO05D004643 5.5e-36 156.0 283 42.0
Rhsim04G0212100 Rhododendron simsii HOM05D002762 ORTHO05D004643 5.5e-36 156.0 349 33.0
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 5.5e-36 156.0 277 36.5
CSS0041788 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 9.3e-36 155.2 217 41.9
AT4G15475 Arabidopsis thaliana HOM05D002762 ORTHO05D004643 4.6e-35 152.9 276 35.5
AL7G40070 Arabidopsis lyrata HOM05D002762 ORTHO05D004643 1.0e-34 151.8 276 35.9
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 5.1e-34 149.4 296 35.8
Ciclev10004705m.g Citrus clementina HOM05D002762 ORTHO05D004643 1.9e-33 147.5 216 39.4
Solyc06g054440.2 Solanum lycopersicum HOM05D002762 ORTHO05D004643 7.4e-33 145.6 217 38.7
AagrBONN_evm.TU.Sc2ySwM_117.2600 Anthoceros agrestis HOM05D002762 ORTHO05D004643 1.3e-32 144.8 346 30.6
Lalb_Chr18g0055921 Lupinus albus HOM05D002762 ORTHO05D004643 3.4e-30 136.7 168 52.4
Aqoxy2G03201 Aquilegia oxysepala HOM05D002762 ORTHO05D004643 1.9e-28 131.0 331 40.2
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 7.9e-27 125.6 339 29.5
HanXRQChr11g0325871 Helianthus annuus HOM05D002762 ORTHO05D004643 9.7e-25 118.6 142 43.7
Glyma.07G254400 Glycine max HOM05D002762 ORTHO05D004643 3.7e-24 116.7 182 36.8
Pp3c6_11940 Physcomitrium patens HOM05D002762 ORTHO05D004643 1.2e-22 111.7 332 29.2
Glyma.15G101100 Glycine max HOM05D002762 ORTHO05D004643 2.6e-22 110.5 138 42.8
MBI19_g20289_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D004643 6.5e-21 105.9 136 41.9
CARHR222240 Cardamine hirsuta HOM05D002762 ORTHO05D004643 1.1e-20 105.1 143 39.9
MBI19_g20287_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D004643 7.2e-20 102.4 175 39.4
Oeu042638.1 Olea europaea HOM05D002762 ORTHO05D004643 1.2e-19 101.7 192 32.8
CSS0016618 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 3.0e-18 97.1 188 33.0
Oeu017376.1 Olea europaea HOM05D002762 ORTHO05D004643 1.5e-12 78.2 106 40.6
Potri.006G220600 Populus trichocarpa HOM05D003317 ORTHO05D003696 7.2e-12 75.9 197 28.4
Pp3c20_15890 Physcomitrium patens HOM05D011912 ORTHO05D014147 1.0e-10 72.0 113 34.5
Sabra06G0170300 Salix brachista HOM05D003317 ORTHO05D003696 3.9e-10 70.1 158 29.7
Cpa.g.c35915 Carica papaya HOM05D002762 ORTHO05D004643 2.0e-09 67.8 87 40.2
Solyc06g054430.1 Solanum lycopersicum HOM05D002762 ORTHO05D004643 2.6e-09 67.4 87 43.7
CARHR222230 Cardamine hirsuta HOM05D002762 ORTHO05D004643 8.2e-08 62.4 95 38.9
SalBow4G1263 Salvia bowleyana HOM05D003317 ORTHO05D003696 1.8e-07 61.2 142 33.8
Oeu018029.1 Olea europaea HOM05D003317 ORTHO05D003696 3.1e-07 60.5 113 33.6
Zm00001eb040360 Zea mays HOM05D003317 ORTHO05D003696 3.1e-07 60.5 139 30.2
Migut.A00075 Erythranthe guttata HOM05D003317 ORTHO05D003696 5.3e-07 59.7 136 31.6
HanXRQChr11g0325861 Helianthus annuus HOM05D002762 ORTHO05D004643 5.3e-07 59.7 86 40.7
Thecc.09G063600 Theobroma cacao HOM05D003317 ORTHO05D003696 5.3e-07 59.7 109 33.9
CBR_g23719 Chara braunii HOM05D002503 ORTHO05D002810 1.6e-06 58.2 202 25.7
Glyma.15G177400 Glycine max HOM05D003317 ORTHO05D003696 2.0e-06 57.8 108 36.1
TWI32G0197 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 3.5e-06 57.0 185 27.0
TAR624G0435 Trochodendron aralioides HOM05D003317 ORTHO05D003696 5.9e-06 56.2 197 25.9
COL.COLO4_21141 Corchorus olitorius HOM05D003317 ORTHO05D003696 7.7e-06 55.8 109 32.1


User provided reference genes

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