Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0577350 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 9.9e-37 156.4 85 100.0
Zm00001eb225540 Zea mays HOM05D005087 ORTHO05D006427 2.1e-23 112.1 63 82.5
Os11g0572900 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 2.8e-23 111.7 89 76.4
Os05g0596600 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 3.4e-21 104.8 58 84.5
Ca_14518_v3 Cicer arietinum L. HOM05D005087 ORTHO05D006427 1.4e-19 99.4 61 73.8
Glyma.20G198300 Glycine max HOM05D005087 ORTHO05D006427 1.4e-19 99.4 61 73.8
Phvul.002G285500 Phaseolus vulgaris HOM05D005087 ORTHO05D006427 1.4e-19 99.4 61 73.8
Psat6g018320 Pisum sativum HOM05D005087 ORTHO05D006427 1.4e-19 99.4 61 73.8
CANSAT80G0443 Cannabis sativa HOM05D005087 ORTHO05D006427 1.9e-19 99.0 61 72.1
TPR.G14572 Trifolium pratense HOM05D005087 ORTHO05D006427 2.5e-19 98.6 61 73.8
Rhsim01G0127000 Rhododendron simsii HOM05D005087 ORTHO05D006427 3.2e-19 98.2 61 73.8
Medtr5g036370 Medicago truncatula HOM05D005087 ORTHO05D006427 4.2e-19 97.8 61 72.1
vmacro21195 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 4.2e-19 97.8 60 73.3
Atru.chr11.2578 Acer truncatum HOM05D005087 ORTHO05D006427 7.1e-19 97.1 61 72.1
Lj3g0013327 Lotus japonicus HOM05D005087 ORTHO05D006427 7.1e-19 97.1 61 72.1
Medtr3g033470 Medicago truncatula HOM05D005087 ORTHO05D006427 7.1e-19 97.1 61 72.1
Medtr4g115050 Medicago truncatula HOM05D005087 ORTHO05D006427 7.1e-19 97.1 61 72.1
arahy.Tifrunner.gnm1.ann1.1A5L99 Arachis hypogaea HOM05D005087 ORTHO05D006427 9.3e-19 96.7 61 70.5
arahy.Tifrunner.gnm1.ann1.JJ1LEU Arachis hypogaea HOM05D005087 ORTHO05D006427 1.2e-18 96.3 61 70.5
Actinidia21541 Actinidia chinensis HOM05D005087 ORTHO05D006427 2.1e-18 95.5 61 70.5
Potri.001G262600 Populus trichocarpa HOM05D005087 ORTHO05D006427 2.1e-18 95.5 61 70.5
Sabra16G0161000 Salix brachista HOM05D005087 ORTHO05D006427 2.1e-18 95.5 61 70.5
Ciclev10030582m.g Citrus clementina HOM05D005087 ORTHO05D006427 2.7e-18 95.1 61 72.1
Duzib177G0717 Durio zibethinus HOM05D005087 ORTHO05D006427 2.7e-18 95.1 61 70.5
SalBow5G0870 Salvia bowleyana HOM05D005087 ORTHO05D006427 2.7e-18 95.1 61 68.9
SalBow5G2001 Salvia bowleyana HOM05D005087 ORTHO05D006427 2.7e-18 95.1 61 68.9
SHI04082 Sapria himalayana HOM05D005087 ORTHO05D006427 2.7e-18 95.1 62 69.4
ATR0626G229 Amborella trichopoda HOM05D005087 ORTHO05D006427 3.5e-18 94.7 61 68.9
Sc10g0000340 Simmondsia chinensis HOM05D005087 ORTHO05D006427 3.5e-18 94.7 61 72.1
MSTRG.17010 Avicennia marina HOM05D005087 ORTHO05D006427 4.6e-18 94.4 61 68.9
Migut.B01270 Erythranthe guttata HOM05D005087 ORTHO05D006427 4.6e-18 94.4 61 68.9
Lj3g0015731 Lotus japonicus HOM05D005087 ORTHO05D006427 4.6e-18 94.4 61 70.5
DCAR_029700 Daucus carota HOM05D005087 ORTHO05D006427 6.0e-18 94.0 59 71.2
Hma1.2p1_0685F.1_g203130 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 6.0e-18 94.0 61 68.9
Hma1.2p1_0685F.1_g203140 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 6.0e-18 94.0 61 68.9
Eucgr.G03334 Eucalyptus grandis HOM05D005087 ORTHO05D006427 7.9e-18 93.6 61 72.1
Lalb_Chr04g0263871 Lupinus albus HOM05D005087 ORTHO05D006427 7.9e-18 93.6 59 71.2
QL04p009808 Quercus lobata HOM05D005087 ORTHO05D006427 7.9e-18 93.6 61 68.9
THA.LOC104819098 Tarenaya hassleriana HOM05D005087 ORTHO05D006427 7.9e-18 93.6 61 68.9
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 1.0e-17 93.2 61 67.2
CAN.G219.75 Capsicum annuum HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
Cfa022636 Carpinus fangiana HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
Haze_03133 Corylus avellana HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
Haze_03136 Corylus avellana HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
Gohir.A13G157100 Gossypium hirsutum HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
Gohir.D13G161900 Gossypium hirsutum HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
Gorai.013G183900 Gossypium raimondii HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
Lj9C640G8 Lonicera japonica HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
Lju99A9T21 Lonicera japonica HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
Nitab4.5_0000707g0070 Nicotiana tabacum HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
Nitab4.5_0002388g0080 Nicotiana tabacum HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
Solyc01g087720.4 Solanum lycopersicum HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
Sopen01g034670 Solanum pennellii HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 68.9
GSVIVG01032195001 Vitis vinifera HOM05D005087 ORTHO05D006427 1.3e-17 92.8 61 70.5
EL10Ac2g04364 Beta vulgaris HOM05D005087 ORTHO05D006427 1.8e-17 92.4 59 69.5
A03p07470 Brassica napus HOM05D005087 ORTHO05D006427 1.8e-17 92.4 61 67.2
C03p08670 Brassica napus HOM05D005087 ORTHO05D006427 1.8e-17 92.4 61 68.9
BolC3t13367H Brassica oleracea HOM05D005087 ORTHO05D006427 1.8e-17 92.4 61 68.9
Hund09862 Selenicereus undatus HOM05D005087 ORTHO05D006427 1.8e-17 92.4 61 70.5
Thecc.05G218700 Theobroma cacao HOM05D005087 ORTHO05D006427 1.8e-17 92.4 61 68.9
TWI09G0473 Tripterygium wilfordii HOM05D005087 ORTHO05D006427 1.8e-17 92.4 61 68.9
Aa31LG11G13680 Aethionema arabicum HOM05D005087 ORTHO05D006427 2.3e-17 92.0 61 67.2
Aqoxy1G00327 Aquilegia oxysepala HOM05D005087 ORTHO05D006427 2.3e-17 92.0 62 67.7
AT5G15920 Arabidopsis thaliana HOM05D005087 ORTHO05D006427 2.3e-17 92.0 61 67.2
BraA03t10076Z Brassica rapa HOM05D005087 ORTHO05D006427 2.3e-17 92.0 61 67.2
Carub.0006s1411 Capsella rubella HOM05D005087 ORTHO05D006427 2.3e-17 92.0 61 67.2
CARHR197390 Cardamine hirsuta HOM05D005087 ORTHO05D006427 2.3e-17 92.0 61 67.2
Thhalv10012535m.g Eutrema salsugineum HOM05D005087 ORTHO05D006427 2.3e-17 92.0 61 67.2
FvH4_7g01640 Fragaria vesca HOM05D005087 ORTHO05D006427 2.3e-17 92.0 61 68.9
FAN03G0563 Fragaria x ananassa HOM05D005087 ORTHO05D006427 2.3e-17 92.0 61 68.9
FAN06G3789 Fragaria x ananassa HOM05D005087 ORTHO05D006427 2.3e-17 92.0 61 68.9
Lsat_1_v5_gn_1_103161 Lactuca sativa HOM05D005087 ORTHO05D006427 2.3e-17 92.0 61 68.9
RcHm_v2.0_Chr1g0317911 Rosa chinensis HOM05D005087 ORTHO05D006427 2.3e-17 92.0 61 68.9
SEGI_00270 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 2.3e-17 92.0 61 68.9
unitig_22.g5433 Utricularia gibba HOM05D005087 ORTHO05D006427 2.3e-17 92.0 62 66.1
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 3.0e-17 91.7 61 68.9
FAN10G1149 Fragaria x ananassa HOM05D005087 ORTHO05D006427 3.0e-17 91.7 61 68.9
SGA_v2.0_scaffold119G32758 Striga asiatica HOM05D005087 ORTHO05D006427 3.0e-17 91.7 61 67.2
Dinv09311 Davidia involucrata HOM05D005087 ORTHO05D006427 3.9e-17 91.3 61 68.9
Prupe.2G022000 Prunus persica HOM05D005087 ORTHO05D006427 3.9e-17 91.3 61 68.9
BcaB01g05014 Brassica carinata HOM05D005087 ORTHO05D006427 5.1e-17 90.9 61 67.2
Sp6g28190 Schrenkiella parvula HOM05D005087 ORTHO05D006427 5.1e-17 90.9 61 67.2
ClCG09G004390 Citrullus lanatus HOM05D005087 ORTHO05D006427 6.7e-17 90.5 61 65.6
MELO3C023581.2 Cucumis melo HOM05D005087 ORTHO05D006427 6.7e-17 90.5 61 65.6
CsaV3_7G030750 Cucumis sativus L. HOM05D005087 ORTHO05D006427 6.7e-17 90.5 61 65.6
MBI11_g23277_MAGBIO Magnolia biondii HOM05D005087 ORTHO05D006427 8.7e-17 90.1 61 68.9
AL6G26800 Arabidopsis lyrata HOM05D005087 ORTHO05D006427 1.1e-16 89.7 61 65.6
CiPaw.14G002700 Carya illinoinensis HOM05D005087 ORTHO05D006427 1.1e-16 89.7 61 67.2
Hund09856 Selenicereus undatus HOM05D005087 ORTHO05D006427 1.1e-16 89.7 61 67.2
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.1e-16 89.7 62 64.5
PGR031G1517 Punica granatum HOM05D005087 ORTHO05D006427 1.5e-16 89.4 61 65.6
TAR623G1215 Trochodendron aralioides HOM05D005087 ORTHO05D006427 1.9e-16 89.0 61 65.6
Mapoly0007s0066 Marchantia polymorpha HOM05D005087 ORTHO05D006427 2.5e-16 88.6 61 63.9
TAR623G1255 Trochodendron aralioides HOM05D005087 ORTHO05D006427 2.5e-16 88.6 61 65.6
SEGI_29436 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 7.4e-16 87.0 61 63.9
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 9.7e-16 86.7 62 61.3
AUR62009415 Chenopodium quinoa HOM05D005087 ORTHO05D006427 1.3e-15 86.3 61 63.9
AUR62023092 Chenopodium quinoa HOM05D005087 ORTHO05D006427 1.3e-15 86.3 61 63.9
Cc00_g23000 Coffea canephora HOM05D005087 ORTHO05D006427 2.8e-15 85.1 61 67.2
PSO210G7144 Papaver somniferum HOM05D005087 ORTHO05D006427 4.8e-15 84.3 62 59.7
MD07G1021900 Malus domestica HOM05D005087 ORTHO05D006427 1.1e-14 83.2 61 60.7
Peaxi162Scf00694g00319 Petunia axillaris HOM05D005087 ORTHO05D006427 3.1e-14 81.6 55 67.3
AagrBONN_evm.TU.Sc2ySwM_344.2054 Anthoceros agrestis HOM05D005087 ORTHO05D006427 9.0e-14 80.1 59 59.3
Oeu049481.1 Olea europaea HOM05D005087 ORTHO05D006427 1.2e-13 79.7 52 69.2
Pp3c24_4940 Physcomitrium patens HOM05D005087 ORTHO05D006427 1.5e-13 79.3 61 59.0
CBR_g88572 Chara braunii HOM05D005087 ORTHO05D000002 1.3e-12 76.3 59 57.6
CSS0029256 Camellia sinensis var. sinensis HOM05D005087 ORTHO05D006427 6.5e-12 73.9 52 65.4
PRCOL_00002930 Prasinoderma coloniale HOM05D005087 ORTHO05D006427 6.5e-12 73.9 60 51.7
Manes.10G136400 Manihot esculenta HOM05D005087 ORTHO05D006427 1.4e-11 72.8 48 68.8
SMO143G0265 Selaginella moellendorffii HOM05D005087 ORTHO05D006427 9.4e-11 70.1 52 57.7
MCO04G035 Micromonas commoda HOM05D005087 ORTHO05D006427 4.6e-10 67.8 62 46.8
CDE09G1121 Ceratophyllum demersum HOM05D005087 ORTHO05D006427 7.9e-10 67.0 42 71.4
Actinidia13977 Actinidia chinensis HOM05D005087 ORTHO05D006427 6.7e-09 63.9 40 70.0
Cfa027028 Carpinus fangiana HOM05D005087 ORTHO05D006427 7.4e-08 60.5 55 47.3
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 1.8e-06 55.8 57 42.1


User provided reference genes

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