Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0573350 Oryza sativa ssp. japonica HOM05D000271 ORTHO05D002798 2.4e-132 475.7 271 100.0
Os02g0540700 Oryza sativa ssp. japonica HOM05D000271 ORTHO05D002798 3.6e-32 142.9 77 92.2
Zm00001eb181650 Zea mays HOM05D000271 ORTHO05D002798 1.1e-25 121.3 76 82.9
Zm00001eb243190 Zea mays HOM05D000271 ORTHO05D002798 5.6e-25 119.0 77 79.2
Zm00001eb422170 Zea mays HOM05D000271 ORTHO05D002798 9.5e-25 118.2 77 77.9
Os04g0418500 Oryza sativa ssp. japonica HOM05D000271 ORTHO05D002798 1.6e-24 117.5 77 77.9
HPP92_016161 Vanilla planifolia HOM05D000271 ORTHO05D002798 7.1e-20 102.1 72 63.9
HPP92_026216 Vanilla planifolia HOM05D000271 ORTHO05D002798 1.2e-19 101.3 72 63.9
HPP92_009306 Vanilla planifolia HOM05D000271 ORTHO05D002798 2.4e-15 87.0 77 55.8
MBI05_g07869_MAGBIO Magnolia biondii HOM05D000271 ORTHO05D002798 2.6e-14 83.6 67 59.7
Duzib147G0687 Durio zibethinus HOM05D000271 ORTHO05D002798 7.6e-14 82.0 67 58.2
Manes.12G152200 Manihot esculenta HOM05D000271 ORTHO05D002798 7.6e-14 82.0 67 59.7
Cpa.g.sc42.110 Carica papaya HOM05D000271 ORTHO05D002798 1.3e-13 81.3 65 56.9
CDE06G1476 Ceratophyllum demersum HOM05D000271 ORTHO05D002798 1.7e-13 80.9 65 63.1
Atru.chr4.777 Acer truncatum HOM05D000271 ORTHO05D002798 2.2e-13 80.5 67 58.2
Cfa002836 Carpinus fangiana HOM05D000271 ORTHO05D002798 3.8e-13 79.7 67 53.7
CiPaw.03G127800 Carya illinoinensis HOM05D000271 ORTHO05D002798 3.8e-13 79.7 67 56.7
Haze_25133 Corylus avellana HOM05D000271 ORTHO05D002798 3.8e-13 79.7 67 53.7
Thecc.01G124800 Theobroma cacao HOM05D000271 ORTHO05D002798 3.8e-13 79.7 67 55.2
COL.COLO4_14001 Corchorus olitorius HOM05D000271 ORTHO05D002798 4.9e-13 79.3 67 55.2
Sed0008178 Sechium edule HOM05D000271 ORTHO05D002798 4.9e-13 79.3 67 56.7
Manes.13G071800 Manihot esculenta HOM05D000271 ORTHO05D002798 6.4e-13 79.0 67 56.7
Duzib187G1115 Durio zibethinus HOM05D000271 ORTHO05D002798 8.4e-13 78.6 67 55.2
QL06p029766 Quercus lobata HOM05D000271 ORTHO05D002798 8.4e-13 78.6 67 53.7
Duzib264G1027 Durio zibethinus HOM05D000271 ORTHO05D002798 1.1e-12 78.2 67 53.7
CiPaw.04G085900 Carya illinoinensis HOM05D000271 ORTHO05D002798 1.4e-12 77.8 67 55.2
Glyma.05G189600 Glycine max HOM05D000271 ORTHO05D002798 1.4e-12 77.8 67 55.2
Glyma.08G147200 Glycine max HOM05D000271 ORTHO05D002798 1.4e-12 77.8 67 55.2
Ah.03g146690 Amaranthus hybridus HOM05D000271 ORTHO05D002798 1.9e-12 77.4 67 49.3
Dinv24314 Davidia involucrata HOM05D000271 ORTHO05D002798 1.9e-12 77.4 67 55.2
CSS0036300 Camellia sinensis var. sinensis HOM05D000271 ORTHO05D002798 2.4e-12 77.0 73 54.8
Rhsim10G0138500 Rhododendron simsii HOM05D000271 ORTHO05D002798 2.4e-12 77.0 67 53.7
Ca_16924_v3 Cicer arietinum L. HOM05D000271 ORTHO05D002798 3.2e-12 76.6 67 53.7
Medtr8g092870 Medicago truncatula HOM05D000271 ORTHO05D002798 3.2e-12 76.6 67 53.7
AUR62003612 Chenopodium quinoa HOM05D000271 ORTHO05D002798 4.2e-12 76.3 67 47.8
AUR62017923 Chenopodium quinoa HOM05D000271 ORTHO05D002798 4.2e-12 76.3 67 47.8
MELO3C008040.2 Cucumis melo HOM05D000271 ORTHO05D002798 4.2e-12 76.3 67 53.7
CsaV3_6G041810 Cucumis sativus L. HOM05D000271 ORTHO05D002798 4.2e-12 76.3 67 53.7
Ciclev10025637m.g Citrus clementina HOM05D000271 ORTHO05D002798 5.4e-12 75.9 67 55.2
Dinv11330 Davidia involucrata HOM05D000271 ORTHO05D002798 5.4e-12 75.9 65 55.4
TAR628G1731 Trochodendron aralioides HOM05D000271 ORTHO05D002798 5.4e-12 75.9 65 56.9
Lj4g0017524 Lotus japonicus HOM05D000271 ORTHO05D002798 7.1e-12 75.5 67 53.7
Lalb_Chr07g0184501 Lupinus albus HOM05D000271 ORTHO05D002798 7.1e-12 75.5 65 55.4
Phvul.009G148200 Phaseolus vulgaris HOM05D000271 ORTHO05D002798 7.1e-12 75.5 65 55.4
TPR.G37415 Trifolium pratense HOM05D000271 ORTHO05D002798 7.1e-12 75.5 67 52.2
TWI79G1625 Tripterygium wilfordii HOM05D000271 ORTHO05D002798 7.1e-12 75.5 67 53.7
Ca_17651_v3 Cicer arietinum L. HOM05D000271 ORTHO05D002798 9.3e-12 75.1 67 52.2
Psat7g046840 Pisum sativum HOM05D000271 ORTHO05D002798 9.3e-12 75.1 67 52.2
ClCG01G015580 Citrullus lanatus HOM05D000271 ORTHO05D002798 1.2e-11 74.7 67 53.7
Gohir.D11G060000 Gossypium hirsutum HOM05D000271 ORTHO05D002798 1.2e-11 74.7 67 52.2
Gorai.007G064700 Gossypium raimondii HOM05D000271 ORTHO05D002798 1.2e-11 74.7 67 52.2
Medtr3g095730 Medicago truncatula HOM05D000271 ORTHO05D002798 1.2e-11 74.7 67 52.2
TAR579G0005 Trochodendron aralioides HOM05D000271 ORTHO05D002798 1.2e-11 74.7 67 52.2
Actinidia09826 Actinidia chinensis HOM05D000271 ORTHO05D002798 1.6e-11 74.3 67 55.2
Phvul.002G270300 Phaseolus vulgaris HOM05D000271 ORTHO05D002798 1.6e-11 74.3 67 53.7
VMungo1309G2205 Vigna mungo HOM05D000271 ORTHO05D002798 1.6e-11 74.3 64 54.7
Gohir.A11G055900 Gossypium hirsutum HOM05D000271 ORTHO05D002798 2.1e-11 73.9 67 50.7
Gohir.A01G128175 Gossypium hirsutum HOM05D000271 ORTHO05D002798 2.7e-11 73.6 67 52.2
Gohir.A11G225800 Gossypium hirsutum HOM05D000271 ORTHO05D002798 2.7e-11 73.6 67 52.2
Gohir.D11G234400 Gossypium hirsutum HOM05D000271 ORTHO05D002798 2.7e-11 73.6 67 52.2
Gorai.007G246700 Gossypium raimondii HOM05D000271 ORTHO05D002798 2.7e-11 73.6 67 52.2
Prupe.6G159600 Prunus persica HOM05D000271 ORTHO05D002798 2.7e-11 73.6 75 49.3
DCAR_001354 Daucus carota HOM05D000271 ORTHO05D002798 3.5e-11 73.2 67 53.7
Gohir.D10G105900 Gossypium hirsutum HOM05D000271 ORTHO05D002798 3.5e-11 73.2 67 53.7
Gorai.011G115700 Gossypium raimondii HOM05D000271 ORTHO05D002798 3.5e-11 73.2 67 53.7
Lalb_Chr12g0203261 Lupinus albus HOM05D000271 ORTHO05D002798 3.5e-11 73.2 65 55.4
VMungo0251G2475 Vigna mungo HOM05D000271 ORTHO05D002798 3.5e-11 73.2 67 52.2
HanXRQChr05g0161711 Helianthus annuus HOM05D000271 ORTHO05D002798 4.6e-11 72.8 67 53.7
MD01G1010900 Malus domestica HOM05D000271 ORTHO05D002798 4.6e-11 72.8 66 53.0
THA.LOC104799472 Tarenaya hassleriana HOM05D000271 ORTHO05D002798 4.6e-11 72.8 67 49.3
TPR.G24056 Trifolium pratense HOM05D000271 ORTHO05D002798 6.0e-11 72.4 67 50.7
GSVIVG01026542001 Vitis vinifera HOM05D000271 ORTHO05D002798 6.0e-11 72.4 67 50.7
Actinidia06644 Actinidia chinensis HOM05D000271 ORTHO05D002798 1.0e-10 71.6 77 49.4
CSS0011867 Camellia sinensis var. sinensis HOM05D000271 ORTHO05D002798 1.0e-10 71.6 67 56.7
CSS0015766 Camellia sinensis var. sinensis HOM05D000271 ORTHO05D002798 1.0e-10 71.6 67 56.7
FvH4_1g24000 Fragaria vesca HOM05D000271 ORTHO05D002798 1.0e-10 71.6 65 52.3
FAN19G1521 Fragaria x ananassa HOM05D000271 ORTHO05D002798 1.0e-10 71.6 65 52.3
THA.LOC104818463 Tarenaya hassleriana HOM05D000271 ORTHO05D002798 1.0e-10 71.6 67 49.3
Actinidia10667 Actinidia chinensis HOM05D000271 ORTHO05D002798 1.3e-10 71.2 67 52.2
ATR0772G042 Amborella trichopoda HOM05D000271 ORTHO05D002798 1.3e-10 71.2 67 50.7
Glyma.06G151200 Glycine max HOM05D000271 ORTHO05D002798 1.3e-10 71.2 65 52.3
TWI75G0086 Tripterygium wilfordii HOM05D000271 ORTHO05D002798 1.7e-10 70.9 67 49.3
FAN26G2567 Fragaria x ananassa HOM05D000271 ORTHO05D002798 2.3e-10 70.5 65 50.8
FAN28G1821 Fragaria x ananassa HOM05D000271 ORTHO05D002798 2.3e-10 70.5 65 50.8
Psat5g063520 Pisum sativum HOM05D000271 ORTHO05D002798 2.3e-10 70.5 65 49.2
FAN23G0093 Fragaria x ananassa HOM05D000271 ORTHO05D002798 3.0e-10 70.1 65 50.8
Potri.005G057500 Populus trichocarpa HOM05D000271 ORTHO05D002798 3.0e-10 70.1 69 52.2
Solyc11g005700.1 Solanum lycopersicum HOM05D000271 ORTHO05D002798 3.0e-10 70.1 67 53.7
Sopen11g001660 Solanum pennellii HOM05D000271 ORTHO05D002798 3.0e-10 70.1 67 53.7
PGSC0003DMG400025560 Solanum tuberosum HOM05D000271 ORTHO05D002798 3.0e-10 70.1 67 53.7
Aa31LG1G17290 Aethionema arabicum HOM05D000271 ORTHO05D002798 3.9e-10 69.7 67 46.3
Aqoxy5G02157 Aquilegia oxysepala HOM05D000271 ORTHO05D002798 3.9e-10 69.7 65 52.3
BcaB02g09809 Brassica carinata HOM05D000271 ORTHO05D002798 3.9e-10 69.7 67 49.3
BcaC01g02696 Brassica carinata HOM05D000271 ORTHO05D002798 3.9e-10 69.7 67 49.3
A06p31450 Brassica napus HOM05D000271 ORTHO05D002798 3.9e-10 69.7 67 49.3
C03p61530 Brassica napus HOM05D000271 ORTHO05D002798 3.9e-10 69.7 67 49.3
BolC3t18413H Brassica oleracea HOM05D000271 ORTHO05D002798 3.9e-10 69.7 67 49.3
BraA06t26081Z Brassica rapa HOM05D000271 ORTHO05D002798 3.9e-10 69.7 67 49.3
CANSAT01G0085 Cannabis sativa HOM05D000271 ORTHO05D002798 3.9e-10 69.7 65 50.8
CARHR278630 Cardamine hirsuta HOM05D000271 ORTHO05D002798 3.9e-10 69.7 67 49.3
Thhalv10004299m.g Eutrema salsugineum HOM05D000271 ORTHO05D002798 3.9e-10 69.7 67 49.3
Sabra07G0090500 Salix brachista HOM05D000271 ORTHO05D002798 3.9e-10 69.7 72 50.0
Sp2g27720 Schrenkiella parvula HOM05D000271 ORTHO05D002798 3.9e-10 69.7 67 49.3
Actinidia15149 Actinidia chinensis HOM05D000271 ORTHO05D002798 5.1e-10 69.3 67 50.7
Peaxi162Scf00012g00231 Petunia axillaris HOM05D000271 ORTHO05D002798 5.1e-10 69.3 68 51.5
AL8G42070 Arabidopsis lyrata HOM05D000271 ORTHO05D002798 6.6e-10 68.9 67 49.3
Potri.007G110600 Populus trichocarpa HOM05D000271 ORTHO05D002798 6.6e-10 68.9 69 52.2
TAR376G0047 Trochodendron aralioides HOM05D000271 ORTHO05D002798 6.6e-10 68.9 70 48.6
AT5G64660 Arabidopsis thaliana HOM05D000271 ORTHO05D002798 8.7e-10 68.6 67 49.3
Lj4A851T41 Lonicera japonica HOM05D000271 ORTHO05D002798 8.7e-10 68.6 67 50.7
PSO782G2911 Papaver somniferum HOM05D000271 ORTHO05D002798 8.7e-10 68.6 65 47.7
Lsat_1_v5_gn_6_98760 Lactuca sativa HOM05D000271 ORTHO05D002798 1.1e-09 68.2 64 50.0
RcHm_v2.0_Chr2g0120131 Rosa chinensis HOM05D000271 ORTHO05D002798 1.1e-09 68.2 65 50.8
PSO063G4837 Papaver somniferum HOM05D000271 ORTHO05D002798 1.5e-09 67.8 65 49.2
Lj7C368T1 Lonicera japonica HOM05D000271 ORTHO05D002798 2.5e-09 67.0 67 49.3
ECA246G3135 Erigeron canadensis HOM05D000271 ORTHO05D002798 3.3e-09 66.6 67 49.3
Hma1.2p1_0483F.1_g162770 Hydrangea macrophylla HOM05D000271 ORTHO05D002798 3.3e-09 66.6 67 46.3
BcaC04g23301 Brassica carinata HOM05D000271 ORTHO05D002798 4.3e-09 66.2 65 47.7
CDE08G1562 Ceratophyllum demersum HOM05D000271 ORTHO05D002798 4.3e-09 66.2 57 59.6
Nitab4.5_0011504g0010 Nicotiana tabacum HOM05D000271 ORTHO05D002798 4.3e-09 66.2 67 50.7
Sabra05G0049400 Salix brachista HOM05D000271 ORTHO05D002798 5.6e-09 65.9 69 49.3
Sc03g0005090 Simmondsia chinensis HOM05D000271 ORTHO05D002798 7.3e-09 65.5 69 44.9
DCAR_014421 Daucus carota HOM05D000271 ORTHO05D002798 9.6e-09 65.1 67 50.7
ClCG02G000630 Citrullus lanatus HOM05D000271 ORTHO05D002798 1.6e-08 64.3 66 51.5
BcaB04g18999 Brassica carinata HOM05D000271 ORTHO05D002798 2.1e-08 63.9 89 38.2
MBI05_g45983_MAGBIO Magnolia biondii HOM05D000271 ORTHO05D002798 2.1e-08 63.9 67 47.8
Oeu051262.1 Olea europaea HOM05D000271 ORTHO05D002798 2.1e-08 63.9 78 46.2
AT5G09800 Arabidopsis thaliana HOM05D000271 ORTHO05D002798 2.8e-08 63.5 65 46.2
SEGI_31823 Sequoiadendron giganteum HOM05D000271 ORTHO05D002798 2.8e-08 63.5 65 53.8
Lj4P694T22 Lonicera japonica HOM05D000271 ORTHO05D002798 4.8e-08 62.8 67 44.8
AL6G20200 Arabidopsis lyrata HOM05D000271 ORTHO05D002798 6.2e-08 62.4 64 45.3
TAR381G0925 Trochodendron aralioides HOM05D000271 ORTHO05D002798 6.2e-08 62.4 67 47.8
BcaC01g03683 Brassica carinata HOM05D000271 ORTHO05D002798 8.1e-08 62.0 86 38.4
C03p49660 Brassica napus HOM05D000271 ORTHO05D002798 8.1e-08 62.0 86 38.4
BolC3t17263H Brassica oleracea HOM05D000271 ORTHO05D002798 8.1e-08 62.0 86 38.4
Carub.0003s1848 Capsella rubella HOM05D000271 ORTHO05D002798 1.1e-07 61.6 67 40.3
Thhalv10020785m.g Eutrema salsugineum HOM05D000271 ORTHO05D002798 1.1e-07 61.6 92 37.0
Sp3g16770 Schrenkiella parvula HOM05D000271 ORTHO05D002798 1.1e-07 61.6 86 37.2
BcaB06g25921 Brassica carinata HOM05D000271 ORTHO05D002798 1.4e-07 61.2 68 42.6
Cc10_g14120 Coffea canephora HOM05D000271 ORTHO05D002798 1.4e-07 61.2 78 44.9
BcaNung06139 Brassica carinata HOM05D000271 ORTHO05D002798 1.8e-07 60.8 76 40.8
A03p40780 Brassica napus HOM05D000271 ORTHO05D002798 1.8e-07 60.8 86 37.2
BraA03t13236Z Brassica rapa HOM05D000271 ORTHO05D002798 1.8e-07 60.8 86 37.2
Nitab4.5_0002909g0060 Nicotiana tabacum HOM05D000271 ORTHO05D002798 1.8e-07 60.8 57 50.9
Carub.0006s0821 Capsella rubella HOM05D000271 ORTHO05D002798 2.4e-07 60.5 65 43.1
Cc07_g17800 Coffea canephora HOM05D000271 ORTHO05D002798 2.4e-07 60.5 68 47.1
Oeu037793.1 Olea europaea HOM05D000271 ORTHO05D002798 2.4e-07 60.5 63 46.0
PGR102G1022 Punica granatum HOM05D000271 ORTHO05D002798 2.4e-07 60.5 67 43.3
A05p30920 Brassica napus HOM05D000271 ORTHO05D002798 3.1e-07 60.1 68 41.2
C05p46840 Brassica napus HOM05D000271 ORTHO05D002798 3.1e-07 60.1 68 41.2
BolC5t33414H Brassica oleracea HOM05D000271 ORTHO05D002798 3.1e-07 60.1 68 41.2
BraA05t21934Z Brassica rapa HOM05D000271 ORTHO05D002798 3.1e-07 60.1 68 41.2
Oeu047675.1 Olea europaea HOM05D000271 ORTHO05D002798 3.1e-07 60.1 64 46.9
Ah.05g167640 Amaranthus hybridus HOM05D000271 ORTHO05D002798 4.0e-07 59.7 64 45.3
Oeu014485.1 Olea europaea HOM05D000271 ORTHO05D002798 4.0e-07 59.7 78 43.6
SGA_v2.0_scaffold76G25172 Striga asiatica HOM05D000271 ORTHO05D002798 4.0e-07 59.7 63 54.0
AL3G32040 Arabidopsis lyrata HOM05D000271 ORTHO05D002798 6.9e-07 58.9 65 40.0
MSTRG.1082 Avicennia marina HOM05D000271 ORTHO05D002798 1.2e-06 58.2 75 46.7
MSTRG.23433 Avicennia marina HOM05D000271 ORTHO05D002798 1.2e-06 58.2 60 46.7
AUR62013534 Chenopodium quinoa HOM05D000271 ORTHO05D002798 2.0e-06 57.4 67 41.8
AUR62026751 Chenopodium quinoa HOM05D000271 ORTHO05D002798 2.0e-06 57.4 67 41.8
Peaxi162Scf00263g00104 Petunia axillaris HOM05D000271 ORTHO05D002798 2.0e-06 57.4 79 45.6
CsaV3_2G018140 Cucumis sativus L. HOM05D000271 ORTHO05D002798 2.6e-06 57.0 57 52.6
Migut.H00758 Erythranthe guttata HOM05D000271 ORTHO05D002798 2.6e-06 57.0 67 44.8
PGR119G0594 Punica granatum HOM05D000271 ORTHO05D002798 2.6e-06 57.0 69 42.0
AT3G18710 Arabidopsis thaliana HOM05D000271 ORTHO05D002798 4.5e-06 56.2 65 38.5
THA.LOC104820423 Tarenaya hassleriana HOM05D000271 ORTHO05D002798 4.5e-06 56.2 69 44.9
Aa31LG8G5530 Aethionema arabicum HOM05D000271 ORTHO05D002798 5.8e-06 55.8 72 41.7
PGSC0003DMG400000791 Solanum tuberosum HOM05D000271 ORTHO05D002798 5.8e-06 55.8 74 44.6
BraA01t03657Z Brassica rapa HOM05D000271 ORTHO05D002798 7.6e-06 55.5 82 36.6
unitig_747.g21514 Utricularia gibba HOM05D000271 ORTHO05D002798 7.6e-06 55.5 68 47.1
EL10Ac1g01497 Beta vulgaris HOM05D000271 ORTHO05D002798 9.9e-06 55.1 64 43.8
BcaB04g20755 Brassica carinata HOM05D000271 ORTHO05D002798 9.9e-06 55.1 89 34.8
Migut.C00993 Erythranthe guttata HOM05D000271 ORTHO05D002798 9.9e-06 55.1 76 47.4


User provided reference genes

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