Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 6.9e-72 273.9 138 100.0
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 2.7e-68 261.9 136 95.6
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 7.2e-61 237.3 131 89.3
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 1.2e-60 236.5 136 86.0
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 6.1e-60 234.2 133 87.2
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 1.4e-59 233.0 136 83.8
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.4e-59 233.0 131 87.0
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 1.8e-59 232.6 133 87.2
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 1.8e-59 232.6 136 84.6
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 1.8e-59 232.6 138 83.3
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 2.3e-59 232.3 131 87.0
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 83.1
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 3.0e-59 231.9 131 87.0
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 3.9e-59 231.5 133 85.7
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 3.9e-59 231.5 131 87.0
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 3.9e-59 231.5 134 85.1
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 3.9e-59 231.5 131 87.0
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 5.1e-59 231.1 138 84.1
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 1.5e-58 229.6 126 88.9
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 2.0e-58 229.2 131 85.5
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 2.6e-58 228.8 131 85.5
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.4e-58 228.0 134 84.3
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 4.4e-58 228.0 133 85.0
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 5.7e-58 227.6 136 83.1
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 5.7e-58 227.6 126 88.1
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 5.7e-58 227.6 133 84.2
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 5.7e-58 227.6 133 84.2
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 5.7e-58 227.6 131 84.7
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 5.7e-58 227.6 131 84.7
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 7.4e-58 227.3 136 83.1
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.4e-58 227.3 138 80.4
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 7.4e-58 227.3 138 81.9
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 7.4e-58 227.3 138 81.9
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 7.4e-58 227.3 131 85.5
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 7.4e-58 227.3 129 84.5
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 9.7e-58 226.9 134 83.6
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 9.7e-58 226.9 134 83.6
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.7e-58 226.9 134 83.6
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.7e-58 226.9 134 83.6
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 9.7e-58 226.9 134 83.6
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.3e-57 226.5 131 85.5
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 1.3e-57 226.5 126 88.1
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 1.7e-57 226.1 135 82.2
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 2.2e-57 225.7 131 85.5
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 2.8e-57 225.3 133 83.5
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.8e-57 225.3 138 80.4
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 3.7e-57 224.9 126 84.9
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.7e-57 224.9 132 83.3
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 3.7e-57 224.9 131 84.7
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 3.7e-57 224.9 123 87.8
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 6.3e-57 224.2 133 83.5
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 8.2e-57 223.8 123 87.0
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.1e-56 223.4 134 82.8
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 1.4e-56 223.0 131 82.4
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.4e-56 223.0 131 84.0
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 1.8e-56 222.6 133 82.7
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.8e-56 222.6 133 83.5
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.4e-56 222.2 133 82.7
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 2.4e-56 222.2 133 82.7
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 2.4e-56 222.2 133 82.7
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 2.4e-56 222.2 136 81.6
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 3.1e-56 221.9 133 82.7
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 4.1e-56 221.5 133 82.7
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 5.3e-56 221.1 126 84.9
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.2e-55 219.9 126 83.3
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 1.5e-55 219.5 136 79.4
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 1.5e-55 219.5 136 79.4
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 1.5e-55 219.5 136 79.4
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 1.5e-55 219.5 136 80.9
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 1.5e-55 219.5 136 80.1
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 3.5e-55 218.4 136 78.7
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 4.5e-55 218.0 136 80.1
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 4.5e-55 218.0 133 80.5
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 4.5e-55 218.0 133 79.7
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 7.7e-55 217.2 136 78.7
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 1.0e-54 216.9 136 80.1
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 1.0e-54 216.9 136 80.1
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 1.3e-54 216.5 126 82.5
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.7e-54 216.1 126 84.9
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 1.7e-54 216.1 136 80.1
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 3.8e-54 214.9 136 78.7
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.8e-54 214.9 126 82.5
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 6.5e-54 214.2 136 78.7
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 1.1e-53 213.4 136 77.9
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 1.9e-53 212.6 136 79.4
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 1.9e-53 212.6 123 83.7
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 2.5e-53 212.2 131 79.4
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 2.5e-53 212.2 138 76.1
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 4.2e-53 211.5 123 83.7
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 5.5e-53 211.1 126 81.7
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.5e-53 211.1 157 70.1
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 7.2e-53 210.7 136 77.9
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.2e-52 209.9 131 79.4
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 2.1e-52 209.1 126 81.7
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 3.6e-52 208.4 126 80.2
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 2.3e-51 205.7 136 75.0
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 9.7e-50 200.3 168 64.9
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.7e-49 199.5 136 73.5
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 2.8e-49 198.7 168 64.3
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.8e-48 196.1 126 76.2
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 2.4e-48 195.7 186 58.6
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.0e-47 192.6 131 73.3
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.5e-47 191.8 126 73.0
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 7.7e-47 190.7 126 73.0
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 6.5e-46 187.6 131 74.0
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 2.1e-44 182.6 104 81.7
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 2.7e-44 182.2 190 54.2
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 3.6e-44 181.8 137 70.8
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 6.1e-44 181.0 131 64.1
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 8.0e-44 180.6 126 65.1
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.4e-43 179.9 134 70.9
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 2.3e-43 179.1 143 59.4
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.5e-42 176.4 142 62.7
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 1.7e-41 172.9 126 70.6
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 3.1e-40 168.7 123 67.5
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 2.0e-39 166.0 140 57.9
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 3.2e-37 158.7 144 62.5
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 9.4e-37 157.1 79 89.9
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.6e-34 149.1 80 82.5
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.3e-33 144.4 80 81.2
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-31 139.4 92 75.0
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 5.9e-31 137.9 71 87.3
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 7.7e-31 137.5 130 61.5
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 1.3e-30 136.7 88 79.5
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.3e-30 136.0 87 78.2
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.6e-30 134.4 75 80.0
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 8.6e-30 134.0 88 77.3
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 5.5e-29 131.3 88 75.0
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 9.5e-29 130.6 88 75.0
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.1e-28 129.4 89 74.2
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.8e-28 129.0 94 69.1
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.8e-28 129.0 68 83.8
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 2.3e-27 125.9 93 69.9
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 5.2e-27 124.8 93 68.8
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 5.2e-27 124.8 93 68.8
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-26 123.6 85 74.1
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 7.5e-26 120.9 95 67.4
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 4.9e-25 118.2 75 78.7
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 4.6e-23 111.7 64 79.7
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.2e-18 97.1 86 60.5
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.7e-17 92.0 91 53.8
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 6.4e-17 91.3 46 87.0
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 1.2e-15 87.0 45 82.2
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 3.3e-13 79.0 57 70.2
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.6e-12 76.6 81 49.4
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 1.7e-09 66.6 41 70.7
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 8.3e-09 64.3 42 76.2


User provided reference genes

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