Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0488500 Oryza sativa ssp. japonica HOM05D006443 ORTHO05D007797 3.4e-170 601.7 326 100.0
Zm00001eb169540 Zea mays HOM05D006443 ORTHO05D007797 4.4e-125 451.8 325 72.9
MBI11_g05329_MAGBIO Magnolia biondii HOM05D006443 ORTHO05D007797 3.2e-99 365.9 324 59.3
TWI36G0197 Tripterygium wilfordii HOM05D006443 ORTHO05D007797 8.6e-97 357.8 318 57.9
PGR119G0512 Punica granatum HOM05D006443 ORTHO05D007797 5.6e-96 355.1 326 57.4
QL03p052624 Quercus lobata HOM05D006443 ORTHO05D007797 2.8e-95 352.8 314 58.9
MD13G1119500 Malus domestica HOM05D006443 ORTHO05D007797 4.7e-95 352.1 324 58.0
Manes.13G011800 Manihot esculenta HOM05D006443 ORTHO05D007797 4.7e-95 352.1 326 57.7
Prupe.1G225500 Prunus persica HOM05D006443 ORTHO05D007797 1.4e-94 350.5 324 56.8
Cpa.g.sc43.60 Carica papaya HOM05D006443 ORTHO05D007797 2.3e-94 349.7 313 58.5
PSO017G6191 Papaver somniferum HOM05D006443 ORTHO05D007797 4.0e-94 349.0 318 56.0
Duzib248G1079 Durio zibethinus HOM05D006443 ORTHO05D007797 6.8e-94 348.2 316 57.3
Eucgr.H04637 Eucalyptus grandis HOM05D006443 ORTHO05D007797 6.8e-94 348.2 327 56.6
Thecc.02G208000 Theobroma cacao HOM05D006443 ORTHO05D007797 6.8e-94 348.2 315 58.4
PSO478G2155 Papaver somniferum HOM05D006443 ORTHO05D007797 8.9e-94 347.8 318 55.7
CSS0008831 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 2.6e-93 346.3 329 56.8
CSS0026603 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 2.6e-93 346.3 329 56.8
COL.COLO4_20406 Corchorus olitorius HOM05D006443 ORTHO05D007797 3.4e-93 345.9 314 57.6
Haze_12422 Corylus avellana HOM05D006443 ORTHO05D007797 3.4e-93 345.9 314 57.3
AL1G22970 Arabidopsis lyrata HOM05D006443 ORTHO05D007797 7.5e-93 344.7 312 57.1
Actinidia30647 Actinidia chinensis HOM05D006443 ORTHO05D007797 9.9e-93 344.4 312 57.1
MELO3C011863.2 Cucumis melo HOM05D006443 ORTHO05D007797 1.7e-92 343.6 317 55.8
Cfa009372 Carpinus fangiana HOM05D006443 ORTHO05D007797 2.2e-92 343.2 314 57.3
Nn4g22309 Nelumbo nucifera HOM05D006443 ORTHO05D007797 2.9e-92 342.8 320 58.1
Atru.chr11.2327 Acer truncatum HOM05D006443 ORTHO05D007797 3.7e-92 342.4 316 57.6
Thhalv10008060m.g Eutrema salsugineum HOM05D006443 ORTHO05D007797 8.3e-92 341.3 313 57.8
FvH4_4g23730 Fragaria vesca HOM05D006443 ORTHO05D007797 8.3e-92 341.3 312 57.4
AT1G11780 Arabidopsis thaliana HOM05D006443 ORTHO05D007797 1.1e-91 340.9 312 56.4
unitig_747.g21126 Utricularia gibba HOM05D006443 ORTHO05D007797 1.9e-91 340.1 317 57.1
Gorai.012G175900 Gossypium raimondii HOM05D006443 ORTHO05D007797 4.1e-91 339.0 316 57.3
Carub.0001s1145 Capsella rubella HOM05D006443 ORTHO05D007797 5.4e-91 338.6 312 55.8
Migut.K00736 Erythranthe guttata HOM05D006443 ORTHO05D007797 5.4e-91 338.6 312 57.1
Sed0000233 Sechium edule HOM05D006443 ORTHO05D007797 7.1e-91 338.2 318 55.0
Glyma.18G006200 Glycine max HOM05D006443 ORTHO05D007797 9.2e-91 337.8 311 56.3
Glyma.11G250800 Glycine max HOM05D006443 ORTHO05D007797 1.6e-90 337.0 311 56.3
RcHm_v2.0_Chr4g0430211 Rosa chinensis HOM05D006443 ORTHO05D007797 1.6e-90 337.0 318 56.9
CANSAT01G1158 Cannabis sativa HOM05D006443 ORTHO05D007797 2.1e-90 336.7 311 55.3
Gohir.D04G182900 Gossypium hirsutum HOM05D006443 ORTHO05D007797 2.7e-90 336.3 316 57.0
BraA09t41778Z Brassica rapa HOM05D006443 ORTHO05D007797 3.5e-90 335.9 313 56.2
CARHR012120 Cardamine hirsuta HOM05D006443 ORTHO05D007797 6.0e-90 335.1 310 56.5
Hma1.2p1_0065F.1_g035440 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 6.0e-90 335.1 314 57.3
Sc14g0009070 Simmondsia chinensis HOM05D006443 ORTHO05D007797 6.0e-90 335.1 324 57.1
FAN07G1264 Fragaria x ananassa HOM05D006443 ORTHO05D007797 7.8e-90 334.7 316 56.3
FAN22G2300 Fragaria x ananassa HOM05D006443 ORTHO05D007797 7.8e-90 334.7 316 56.3
BcaC07g41759 Brassica carinata HOM05D006443 ORTHO05D007797 1.7e-89 333.6 313 55.9
BolC8t52335H Brassica oleracea HOM05D006443 ORTHO05D007797 1.7e-89 333.6 313 55.9
Gohir.A04G139700 Gossypium hirsutum HOM05D006443 ORTHO05D007797 3.0e-89 332.8 316 56.3
Sp1g10410 Schrenkiella parvula HOM05D006443 ORTHO05D007797 3.0e-89 332.8 309 56.6
Cc11_g16930 Coffea canephora HOM05D006443 ORTHO05D007797 3.9e-89 332.4 313 54.6
Hund06091 Selenicereus undatus HOM05D006443 ORTHO05D007797 5.1e-89 332.0 324 55.6
THA.LOC104807130 Tarenaya hassleriana HOM05D006443 ORTHO05D007797 6.6e-89 331.6 316 56.0
Aa31LG1G3790 Aethionema arabicum HOM05D006443 ORTHO05D007797 8.6e-89 331.3 312 55.8
Sabra03G0125800 Salix brachista HOM05D006443 ORTHO05D007797 1.1e-88 330.9 326 55.2
Potri.003G171900 Populus trichocarpa HOM05D006443 ORTHO05D007797 1.5e-88 330.5 328 55.5
BcaB08g37422 Brassica carinata HOM05D006443 ORTHO05D007797 1.9e-88 330.1 310 56.1
Ciclev10031911m.g Citrus clementina HOM05D006443 ORTHO05D007797 1.9e-88 330.1 318 56.0
CDE05G3615 Ceratophyllum demersum HOM05D006443 ORTHO05D007797 2.5e-88 329.7 315 55.9
HanXRQChr08g0207841 Helianthus annuus HOM05D006443 ORTHO05D007797 2.5e-88 329.7 313 55.0
Phvul.001G262100 Phaseolus vulgaris HOM05D006443 ORTHO05D007797 2.5e-88 329.7 311 54.7
arahy.Tifrunner.gnm1.ann1.DXN1WG Arachis hypogaea HOM05D006443 ORTHO05D007797 3.3e-88 329.3 313 55.6
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 3.3e-88 329.3 317 55.5
Psat5g096400 Pisum sativum HOM05D006443 ORTHO05D007797 3.3e-88 329.3 311 54.7
Oeu058924.1 Olea europaea HOM05D006443 ORTHO05D007797 7.3e-88 328.2 321 54.2
CiPaw.05G109500 Carya illinoinensis HOM05D006443 ORTHO05D007797 9.5e-88 327.8 313 56.2
GSVIVG01010487001 Vitis vinifera HOM05D006443 ORTHO05D007797 1.2e-87 327.4 315 56.2
arahy.Tifrunner.gnm1.ann1.P16M7J Arachis hypogaea HOM05D006443 ORTHO05D007797 3.6e-87 325.9 313 55.6
Ca_16457_v3 Cicer arietinum L. HOM05D006443 ORTHO05D007797 1.1e-86 324.3 311 55.0
VMungo1383G0397 Vigna mungo HOM05D006443 ORTHO05D007797 1.4e-86 323.9 311 54.7
Aqoxy5G03367 Aquilegia oxysepala HOM05D006443 ORTHO05D007797 2.4e-86 323.2 311 54.0
C08p47970 Brassica napus HOM05D006443 ORTHO05D007797 3.1e-86 322.8 252 62.7
Lalb_Chr11g0075761 Lupinus albus HOM05D006443 ORTHO05D007797 8.9e-86 321.2 315 55.2
Sopen04g017520 Solanum pennellii HOM05D006443 ORTHO05D007797 8.9e-86 321.2 326 52.1
AUR62028926 Chenopodium quinoa HOM05D006443 ORTHO05D007797 1.2e-85 320.9 312 56.4
Medtr3g085290 Medicago truncatula HOM05D006443 ORTHO05D007797 2.0e-85 320.1 313 55.0
Peaxi162Scf00359g00713 Petunia axillaris HOM05D006443 ORTHO05D007797 2.0e-85 320.1 317 53.0
TPR.G17786 Trifolium pratense HOM05D006443 ORTHO05D007797 2.0e-85 320.1 311 54.7
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 2.6e-85 319.7 252 62.3
Solyc04g045590.3 Solanum lycopersicum HOM05D006443 ORTHO05D007797 2.6e-85 319.7 326 52.1
Lj6g0022486 Lotus japonicus HOM05D006443 ORTHO05D007797 3.4e-85 319.3 316 55.1
Nitab4.5_0008905g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 3.4e-85 319.3 316 53.8
AUR62005622 Chenopodium quinoa HOM05D006443 ORTHO05D007797 4.4e-85 318.9 311 55.0
Nitab4.5_0001356g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 4.4e-85 318.9 315 53.7
FAN17G1989 Fragaria x ananassa HOM05D006443 ORTHO05D007797 2.9e-84 316.2 228 66.2
ATR0561G191 Amborella trichopoda HOM05D006443 ORTHO05D007797 4.9e-84 315.5 239 64.4
EL10Ac6g13506 Beta vulgaris HOM05D006443 ORTHO05D007797 1.4e-83 313.9 318 54.1
CAN.G237.4 Capsicum annuum HOM05D006443 ORTHO05D007797 4.1e-83 312.4 326 50.9
MSTRG.502 Avicennia marina HOM05D006443 ORTHO05D007797 7.1e-83 311.6 315 54.9
SGA_v2.0_scaffold9G04677 Striga asiatica HOM05D006443 ORTHO05D007797 6.0e-82 308.5 339 51.9
Rhsim12G0099900 Rhododendron simsii HOM05D006443 ORTHO05D007797 2.5e-80 303.1 232 65.1
Actinidia08069 Actinidia chinensis HOM05D006443 ORTHO05D007797 5.6e-80 302.0 324 53.4
Lsat_1_v5_gn_4_56020 Lactuca sativa HOM05D006443 ORTHO05D007797 4.7e-79 298.9 251 60.6
SEGI_28427 Sequoiadendron giganteum HOM05D006443 ORTHO05D007797 1.7e-76 290.4 319 50.5
Lj6C827T5 Lonicera japonica HOM05D006443 ORTHO05D007797 4.9e-76 288.9 366 48.4
ClCG11G013630 Citrullus lanatus HOM05D006443 ORTHO05D007797 6.4e-76 288.5 317 50.8
vmacro19384 Vaccinium macrocarpon HOM05D006443 ORTHO05D007797 7.8e-74 281.6 321 50.2
Mapoly0036s0054 Marchantia polymorpha HOM05D006443 ORTHO05D007797 9.6e-72 274.6 376 43.6
CsaV3_5G030250 Cucumis sativus L. HOM05D006443 ORTHO05D007797 1.3e-71 274.2 208 63.9
SMO196G0120 Selaginella moellendorffii HOM05D006443 ORTHO05D007797 1.6e-71 273.9 316 47.8
AagrBONN_evm.TU.Sc2ySwM_228.5822 Anthoceros agrestis HOM05D006443 ORTHO05D007797 2.8e-71 273.1 316 45.9
Pp3c15_20640 Physcomitrium patens HOM05D006443 ORTHO05D007797 6.2e-71 271.9 358 45.5
TAR629G0791 Trochodendron aralioides HOM05D006443 ORTHO05D007797 3.1e-62 243.0 151 75.5
Dinv17565 Davidia involucrata HOM05D006443 ORTHO05D007797 5.6e-56 222.2 254 52.8
SalBow1G6802 Salvia bowleyana HOM05D006443 ORTHO05D007797 7.6e-53 211.8 251 49.8
SalBow2G0214 Salvia bowleyana HOM05D006443 ORTHO05D007797 7.6e-53 211.8 251 49.8
CSS0019305 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.6e-50 204.1 126 76.2
CSS0017614 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.8e-49 200.7 126 73.8
DCAR_031204 Daucus carota HOM05D006443 ORTHO05D007797 1.1e-48 198.0 117 76.9
CBR_g32330 Chara braunii HOM05D006443 ORTHO05D007797 7.9e-42 175.3 141 56.0
Hma1.2p1_0065F.1_g035450 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 6.5e-36 155.6 88 79.5
Cre06.g278198 Chlamydomonas reinhardtii HOM05D006443 ORTHO05D007797 7.4e-32 142.1 186 39.2
DCAR_031205 Daucus carota HOM05D006443 ORTHO05D007797 3.7e-31 139.8 214 42.5
CSS0022605 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.4e-25 121.3 97 61.9
PRCOL_00005324 Prasinoderma coloniale HOM05D006443 ORTHO05D007797 4.8e-23 112.8 141 44.0
MCO14G547 Micromonas commoda HOM05D006443 ORTHO05D007797 3.1e-22 110.2 73 60.3
ClCG11G013640 Citrullus lanatus HOM05D006443 ORTHO05D007797 7.7e-21 105.5 54 85.2
C08p48190 Brassica napus HOM05D006443 ORTHO05D007797 8.2e-15 85.5 47 74.5
Cfa001627 Carpinus fangiana HOM05D006443 ORTHO05D007797 1.4e-14 84.7 130 40.0
BolC8t52352H Brassica oleracea HOM05D006443 ORTHO05D007797 3.1e-14 83.6 47 72.3
CSS0049531 Camellia sinensis var. sinensis HOM05D001731 ORTHO05D000001 5.5e-11 72.8 50 66.0
Phvul.001G131400 Phaseolus vulgaris HOM05D003341 ORTHO05D003603 1.8e-09 67.8 150 32.7
Ah.08g209790 Amaranthus hybridus HOM05D003341 ORTHO05D003603 3.0e-09 67.0 151 30.5
C08p46980 Brassica napus HOM05D006443 ORTHO05D007797 3.0e-09 67.0 48 58.3
BolC8t52235H Brassica oleracea HOM05D006443 ORTHO05D007797 3.0e-09 67.0 48 58.3
CARHR089000 Cardamine hirsuta HOM05D003341 ORTHO05D003603 6.8e-09 65.9 131 35.9
Migut.J00071 Erythranthe guttata HOM05D003341 ORTHO05D003603 6.8e-09 65.9 151 31.1
Psat5g189880 Pisum sativum HOM05D003341 ORTHO05D003603 2.0e-08 64.3 110 33.6
VMungo0331G2034 Vigna mungo HOM05D003341 ORTHO05D003603 2.0e-08 64.3 150 30.7
FAN02G2897 Fragaria x ananassa HOM05D003341 ORTHO05D003603 2.6e-08 63.9 106 33.0
Sed0009033 Sechium edule HOM05D003341 ORTHO05D003603 3.4e-08 63.5 150 30.7
A05p35310 Brassica napus HOM05D003341 ORTHO05D003603 5.7e-08 62.8 144 29.2
MSTRG.5521 Avicennia marina HOM05D003341 ORTHO05D003603 7.5e-08 62.4 149 28.2
BraA05t22341Z Brassica rapa HOM05D003341 ORTHO05D003603 7.5e-08 62.4 144 29.2
AUR62026370 Chenopodium quinoa HOM05D003341 ORTHO05D003603 7.5e-08 62.4 151 29.1
CSS0017792 Camellia sinensis var. sinensis HOM05D003341 ORTHO05D003603 9.8e-08 62.0 150 30.0
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 9.8e-08 62.0 143 31.5
EL10Ac7g17042 Beta vulgaris HOM05D003341 ORTHO05D003603 1.7e-07 61.2 151 30.5
FvH4_6g35240 Fragaria vesca HOM05D003341 ORTHO05D003603 1.7e-07 61.2 106 32.1
FAN09G0950 Fragaria x ananassa HOM05D003341 ORTHO05D003603 1.7e-07 61.2 106 32.1
FAN14G1485 Fragaria x ananassa HOM05D003341 ORTHO05D003603 1.7e-07 61.2 106 32.1
VMungo0331G1094 Vigna mungo HOM05D003341 ORTHO05D003603 1.7e-07 61.2 129 32.6
MELO3C026046.2 Cucumis melo HOM05D003341 ORTHO05D003603 2.2e-07 60.8 150 32.7
Glyma.19G263000 Glycine max HOM05D003341 ORTHO05D003603 2.8e-07 60.5 154 28.6
CARHR089020 Cardamine hirsuta HOM05D003341 ORTHO05D003603 3.7e-07 60.1 87 37.9
CsaV3_4G026990 Cucumis sativus L. HOM05D003341 ORTHO05D003603 3.7e-07 60.1 147 31.3
Migut.I01109 Erythranthe guttata HOM05D003341 ORTHO05D003603 3.7e-07 60.1 80 38.8
Glyma.01G129600 Glycine max HOM05D003341 ORTHO05D003603 3.7e-07 60.1 79 38.0
RcHm_v2.0_Chr2g0146601 Rosa chinensis HOM05D003341 ORTHO05D003603 3.7e-07 60.1 81 37.0
Ciclev10012606m.g Citrus clementina HOM05D003341 ORTHO05D003603 4.8e-07 59.7 79 38.0
THA.LOC104823314 Tarenaya hassleriana HOM05D003341 ORTHO05D003603 4.8e-07 59.7 116 32.8
TWI14G1117 Tripterygium wilfordii HOM05D003341 ORTHO05D003603 4.8e-07 59.7 80 40.0
Zm00001eb212020 Zea mays HOM05D003341 ORTHO05D003603 4.8e-07 59.7 90 37.8
Aqoxy2G00755 Aquilegia oxysepala HOM05D003341 ORTHO05D003603 6.3e-07 59.3 91 37.4
AUR62006332 Chenopodium quinoa HOM05D003341 ORTHO05D003603 6.3e-07 59.3 84 35.7
Glyma.20G056000 Glycine max HOM05D003341 ORTHO05D003603 6.3e-07 59.3 154 28.6
Hma1.2p1_1349F.1_g277370 Hydrangea macrophylla HOM05D003341 ORTHO05D003603 6.3e-07 59.3 79 36.7
arahy.Tifrunner.gnm1.ann1.8PX6PB Arachis hypogaea HOM05D003341 ORTHO05D003603 1.1e-06 58.5 154 27.9
Atru.chr8.2366 Acer truncatum HOM05D003341 ORTHO05D003603 1.4e-06 58.2 90 36.7
Cfa003500 Carpinus fangiana HOM05D003341 ORTHO05D003603 1.4e-06 58.2 79 36.7
MBI15_g40704_MAGBIO Magnolia biondii HOM05D003341 ORTHO05D003603 1.4e-06 58.2 80 37.5
Oeu064882.1 Olea europaea HOM05D003341 ORTHO05D003603 1.4e-06 58.2 79 36.7
VMungo1309G0789 Vigna mungo HOM05D003341 ORTHO05D003603 1.4e-06 58.2 119 29.4
Lj2C63G6 Lonicera japonica HOM05D003341 ORTHO05D003603 1.8e-06 57.8 127 31.5
vmacro22021 Vaccinium macrocarpon HOM05D003341 ORTHO05D003603 1.8e-06 57.8 79 38.0
ATR0681G237 Amborella trichopoda HOM05D003341 ORTHO05D003603 2.4e-06 57.4 79 36.7
ClCG04G006530 Citrullus lanatus HOM05D003341 ORTHO05D003603 2.4e-06 57.4 79 38.0
Cfa003499 Carpinus fangiana HOM05D003341 ORTHO05D003603 3.1e-06 57.0 79 36.7
VMungo0720G1619 Vigna mungo HOM05D003341 ORTHO05D003603 3.1e-06 57.0 79 36.7
CANSAT56G3367 Cannabis sativa HOM05D003341 ORTHO05D003603 4.1e-06 56.6 82 36.6
Thhalv10020706m.g Eutrema salsugineum HOM05D003341 ORTHO05D003603 4.1e-06 56.6 79 35.4
Psat7g228080 Pisum sativum HOM05D003341 ORTHO05D003603 4.1e-06 56.6 79 36.7
BcaC05g29120 Brassica carinata HOM05D003341 ORTHO05D003603 5.4e-06 56.2 79 34.2
CARHR212140 Cardamine hirsuta HOM05D003341 ORTHO05D003603 5.4e-06 56.2 79 39.2
Cc04_g00980 Coffea canephora HOM05D003341 ORTHO05D003603 5.4e-06 56.2 94 35.1
Sc10g0007940 Simmondsia chinensis HOM05D003341 ORTHO05D003603 5.4e-06 56.2 79 34.2
Thecc.04G156400 Theobroma cacao HOM05D003341 ORTHO05D003603 5.4e-06 56.2 79 35.4
Actinidia26012 Actinidia chinensis HOM05D003341 ORTHO05D003603 9.1e-06 55.5 93 36.6
Lsat_1_v5_gn_1_49781 Lactuca sativa HOM05D000682 ORTHO05D000510 9.1e-06 55.5 79 38.0
SalBow6G4487 Salvia bowleyana HOM05D003341 ORTHO05D003603 9.1e-06 55.5 81 34.6


User provided reference genes

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