Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0433600 Oryza sativa ssp. japonica HOM05D006156 ORTHO05D007699 3.2e-164 582.4 488 100.0
Zm00001eb161270 Zea mays HOM05D006156 ORTHO05D007699 5.5e-132 475.3 488 85.9
CAN.G481.4 Capsicum annuum HOM05D006156 ORTHO05D007699 3.2e-63 246.9 229 52.8
TWI39G0515 Tripterygium wilfordii HOM05D006156 ORTHO05D007699 7.9e-62 242.3 491 49.5
Lj1P1020T11 Lonicera japonica HOM05D006156 ORTHO05D007699 3.9e-61 240.0 227 63.0
vmacro22634 Vaccinium macrocarpon HOM05D006156 ORTHO05D007699 8.7e-61 238.8 470 58.5
MBI06_g46584_MAGBIO Magnolia biondii HOM05D006156 ORTHO05D007699 1.9e-60 237.7 232 55.2
Lj1P1017T24 Lonicera japonica HOM05D006156 ORTHO05D007699 5.7e-60 236.1 224 62.1
CsaV3_3G019910 Cucumis sativus L. HOM05D006156 ORTHO05D007699 9.6e-60 235.3 223 63.2
Sc25g0004880 Simmondsia chinensis HOM05D006156 ORTHO05D007699 9.6e-60 235.3 228 61.8
Nitab4.5_0007167g0040 Nicotiana tabacum HOM05D006156 ORTHO05D007699 2.1e-59 234.2 401 61.1
arahy.Tifrunner.gnm1.ann1.KWX84I Arachis hypogaea HOM05D006156 ORTHO05D007699 3.7e-59 233.4 223 62.3
Zm00001eb293160 Zea mays HOM05D006156 ORTHO05D007699 1.1e-58 231.9 448 57.1
Duzib205G1399 Durio zibethinus HOM05D006156 ORTHO05D007699 3.1e-58 230.3 482 55.8
COL.COLO4_16762 Corchorus olitorius HOM05D006156 ORTHO05D007699 4.1e-58 229.9 487 54.0
Lalb_Chr08g0240251 Lupinus albus HOM05D006156 ORTHO05D007699 4.1e-58 229.9 223 52.9
Lj3P904T49 Lonicera japonica HOM05D006156 ORTHO05D007699 5.3e-58 229.6 222 60.8
VMungo1309G2471 Vigna mungo HOM05D006156 ORTHO05D007699 9.0e-58 228.8 223 60.5
MELO3C008493.2 Cucumis melo HOM05D006156 ORTHO05D007699 4.5e-57 226.5 223 60.1
QL09p009182 Quercus lobata HOM05D006156 ORTHO05D007699 4.5e-57 226.5 223 52.9
Glyma.06G128900 Glycine max HOM05D006156 ORTHO05D007699 5.9e-57 226.1 224 53.1
Phvul.009G052600 Phaseolus vulgaris HOM05D006156 ORTHO05D007699 5.9e-57 226.1 223 52.0
AL5G28970 Arabidopsis lyrata HOM05D006156 ORTHO05D007699 7.6e-57 225.7 224 51.8
CSS0009368 Camellia sinensis var. sinensis HOM05D006156 ORTHO05D007699 7.6e-57 225.7 224 61.2
PSO761G0591 Papaver somniferum HOM05D006156 ORTHO05D007699 1.0e-56 225.3 226 50.0
Medtr3g091460 Medicago truncatula HOM05D006156 ORTHO05D007699 1.3e-56 224.9 223 58.3
Lj1g0013962 Lotus japonicus HOM05D006156 ORTHO05D007699 1.7e-56 224.6 223 53.8
PSO210G2442 Papaver somniferum HOM05D006156 ORTHO05D007699 6.5e-56 222.6 226 48.7
Hma1.2p1_1507F.1_g287590 Hydrangea macrophylla HOM05D006156 ORTHO05D007699 1.1e-55 221.9 496 53.6
AUR62025156 Chenopodium quinoa HOM05D006156 ORTHO05D007699 1.4e-55 221.5 231 56.3
A06p18520 Brassica napus HOM05D006156 ORTHO05D007699 7.2e-55 219.2 223 56.1
BraA01t02398Z Brassica rapa HOM05D006156 ORTHO05D007699 7.2e-55 219.2 223 52.9
BraA06t24930Z Brassica rapa HOM05D006156 ORTHO05D007699 7.2e-55 219.2 223 56.1
Nn3g18985 Nelumbo nucifera HOM05D006156 ORTHO05D007699 9.3e-55 218.8 228 58.3
TAR633G0899 Trochodendron aralioides HOM05D006156 ORTHO05D007699 9.3e-55 218.8 223 51.1
Lsat_1_v5_gn_2_18861 Lactuca sativa HOM05D006156 ORTHO05D007699 1.2e-54 218.4 226 58.4
TAR629G3483 Trochodendron aralioides HOM05D006156 ORTHO05D007699 1.0e-53 215.3 223 58.3
Psat5g077680 Pisum sativum HOM05D006156 ORTHO05D007699 6.7e-53 212.6 223 49.3
THA.LOC104814928 Tarenaya hassleriana HOM05D006156 ORTHO05D007699 6.7e-53 212.6 478 53.8
Glyma.04G235800 Glycine max HOM05D006156 ORTHO05D007699 8.7e-53 212.2 487 53.4
TWI23G0795 Tripterygium wilfordii HOM05D006156 ORTHO05D007699 1.9e-52 211.1 485 46.2
TPR.G19387 Trifolium pratense HOM05D006156 ORTHO05D007699 2.5e-52 210.7 223 48.4
BcaB02g09580 Brassica carinata HOM05D006156 ORTHO05D007699 4.3e-52 209.9 223 54.3
TAR374G1306 Trochodendron aralioides HOM05D006156 ORTHO05D007699 5.7e-52 209.5 223 57.0
Medtr1g113010 Medicago truncatula HOM05D006156 ORTHO05D007699 7.4e-52 209.1 223 57.0
Sopen03g023030 Solanum pennellii HOM05D006156 ORTHO05D007699 2.8e-51 207.2 223 47.1
Atru.chr12.2193 Acer truncatum HOM05D006156 ORTHO05D007699 2.4e-50 204.1 227 56.4
BraA06t25755Z Brassica rapa HOM05D006156 ORTHO05D007699 3.1e-50 203.8 223 52.9
A01p24850 Brassica napus HOM05D006156 ORTHO05D007699 1.2e-49 201.8 223 48.9
Dinv29283 Davidia involucrata HOM05D006156 ORTHO05D007699 5.9e-49 199.5 174 57.5
Actinidia08649 Actinidia chinensis HOM05D006156 ORTHO05D007699 1.7e-48 198.0 477 46.3
Oeu041055.1 Olea europaea HOM05D006156 ORTHO05D007699 1.7e-48 198.0 223 46.6
A06p28120 Brassica napus HOM05D006156 ORTHO05D007699 2.9e-48 197.2 223 52.5
BcaC09g49933 Brassica carinata HOM05D006156 ORTHO05D007699 6.5e-48 196.1 223 45.7
BolC1t03040H Brassica oleracea HOM05D006156 ORTHO05D007699 1.1e-47 195.3 223 45.7
Sp5g12840 Schrenkiella parvula HOM05D006156 ORTHO05D007699 1.2e-46 191.8 223 46.2
AT3G49240 Arabidopsis thaliana HOM05D006156 ORTHO05D007699 2.7e-46 190.7 223 44.8
Sed0021439 Sechium edule HOM05D006156 ORTHO05D007699 2.7e-46 190.7 223 55.2
BcaC01g02395 Brassica carinata HOM05D006156 ORTHO05D007699 6.1e-46 189.5 223 45.7
C03p65720 Brassica napus HOM05D006156 ORTHO05D007699 6.1e-46 189.5 223 45.7
BolC3t18825H Brassica oleracea HOM05D006156 ORTHO05D007699 6.1e-46 189.5 223 45.7
C01p31050 Brassica napus HOM05D006156 ORTHO05D007699 3.0e-45 187.2 223 44.4
HPP92_023255 Vanilla planifolia HOM05D006156 ORTHO05D007699 5.1e-45 186.4 465 61.5
Aa31LG4G17650 Aethionema arabicum HOM05D006156 ORTHO05D007699 8.8e-45 185.7 223 44.4
Cc02_g01570 Coffea canephora HOM05D006156 ORTHO05D007699 8.8e-45 185.7 223 53.8
Peaxi162Scf00740g00002 Petunia axillaris HOM05D006156 ORTHO05D007699 2.0e-44 184.5 226 44.7
CDE09G0684 Ceratophyllum demersum HOM05D006156 ORTHO05D007699 3.3e-44 183.7 223 53.4
Migut.F00214 Erythranthe guttata HOM05D006156 ORTHO05D007699 3.3e-44 183.7 222 52.3
Carub.0005s1546 Capsella rubella HOM05D006156 ORTHO05D007699 4.4e-44 183.3 197 49.2
FAN15G3345 Fragaria x ananassa HOM05D006156 ORTHO05D007699 9.7e-44 182.2 223 47.5
FvH4_2g09580 Fragaria vesca HOM05D006156 ORTHO05D007699 2.2e-43 181.0 490 43.7
FAN24G0640 Fragaria x ananassa HOM05D006156 ORTHO05D007699 2.8e-43 180.6 490 43.7
AUR62033717 Chenopodium quinoa HOM05D006156 ORTHO05D007699 4.8e-43 179.9 231 49.4
Duzib068G0148 Durio zibethinus HOM05D006156 ORTHO05D007699 1.4e-42 178.3 465 51.6
Lalb_Chr11g0066861 Lupinus albus HOM05D006156 ORTHO05D007699 1.2e-41 175.3 223 52.5
Rhsim03G0208700 Rhododendron simsii HOM05D006156 ORTHO05D007699 2.6e-41 174.1 474 53.2
Manes.01G183200 Manihot esculenta HOM05D006156 ORTHO05D007699 3.4e-41 173.7 223 51.6
HanXRQChr15g0493581 Helianthus annuus HOM05D006156 ORTHO05D007699 4.5e-41 173.3 223 52.9
Ca_16706_v3 Cicer arietinum L. HOM05D006156 ORTHO05D007699 1.3e-40 171.8 223 51.6
FAN20G0818 Fragaria x ananassa HOM05D006156 ORTHO05D007699 2.2e-40 171.0 490 50.8
HanXRQChr17g0536281 Helianthus annuus HOM05D006156 ORTHO05D007699 2.2e-40 171.0 223 52.9
BcaB05g23113 Brassica carinata HOM05D006156 ORTHO05D007699 5.0e-40 169.9 223 45.7
HPP92_023311 Vanilla planifolia HOM05D006156 ORTHO05D007699 6.5e-40 169.5 459 61.0
SGA_v2.0_scaffold192G40548 Striga asiatica HOM05D006156 ORTHO05D007699 1.1e-39 168.7 223 40.8
SGA_v2.0_scaffold44G16801 Striga asiatica HOM05D006156 ORTHO05D007699 3.2e-39 167.2 223 49.3
PGR142G3289 Punica granatum HOM05D006156 ORTHO05D007699 1.2e-38 165.2 222 50.0
CARHR158100 Cardamine hirsuta HOM05D006156 ORTHO05D007699 2.7e-38 164.1 223 41.7
Dinv35333 Davidia involucrata HOM05D006156 ORTHO05D007699 3.6e-38 163.7 225 42.7
CANSAT21G2038 Cannabis sativa HOM05D006156 ORTHO05D007699 1.3e-35 155.2 223 39.5
Gohir.A11G015000 Gossypium hirsutum HOM05D006156 ORTHO05D007699 4.8e-35 153.3 223 48.4
Thecc.03G198800 Theobroma cacao HOM05D006156 ORTHO05D007699 2.4e-34 151.0 481 49.3
DCAR_008923 Daucus carota HOM05D006156 ORTHO05D007699 4.5e-33 146.7 228 48.7
Aqoxy5G04292 Aquilegia oxysepala HOM05D006156 ORTHO05D007699 7.7e-33 146.0 229 38.4
Nitab4.5_0000548g0160 Nicotiana tabacum HOM05D006156 ORTHO05D007699 1.7e-32 144.8 486 45.7
Sabra12G0016600 Salix brachista HOM05D006156 ORTHO05D007699 1.5e-31 141.7 482 44.2
Potri.012G015400 Populus trichocarpa HOM05D006156 ORTHO05D007699 2.3e-29 134.4 486 43.8
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 2.3e-29 134.4 494 43.9
Cfa016229 Carpinus fangiana HOM05D006156 ORTHO05D007699 3.0e-29 134.0 223 36.3
Haze_00212 Corylus avellana HOM05D006156 ORTHO05D007699 4.0e-29 133.7 223 36.3
ATR0602G249 Amborella trichopoda HOM05D006156 ORTHO05D007699 4.4e-28 130.2 224 46.0
Gohir.D11G015100 Gossypium hirsutum HOM05D006156 ORTHO05D007699 4.4e-28 130.2 488 47.5
Ah.10g031910 Amaranthus hybridus HOM05D006156 ORTHO05D007699 7.5e-28 129.4 231 44.2
Gorai.007G015500 Gossypium raimondii HOM05D006156 ORTHO05D007699 7.5e-28 129.4 488 47.5
RcHm_v2.0_Chr1g0380631 Rosa chinensis HOM05D006156 ORTHO05D007699 7.5e-28 129.4 226 46.5
MD07G1288700 Malus domestica HOM05D006156 ORTHO05D007699 3.1e-26 124.0 223 34.5
CiPaw.05G196700 Carya illinoinensis HOM05D006156 ORTHO05D007699 2.7e-25 120.9 103 58.3
Ciclev10019365m.g Citrus clementina HOM05D006156 ORTHO05D007699 1.3e-24 118.6 103 56.3
Prupe.2G310200 Prunus persica HOM05D006156 ORTHO05D007699 1.3e-24 118.6 223 33.6
BcaC07g39395 Brassica carinata HOM05D006156 ORTHO05D007699 1.7e-24 118.2 210 36.2
ECA248G2108 Erigeron canadensis HOM05D006156 ORTHO05D007699 1.7e-24 118.2 128 47.7
Hund19268 Selenicereus undatus HOM05D006156 ORTHO05D007699 2.9e-24 117.5 223 43.0
BolC8t50041H Brassica oleracea HOM05D006156 ORTHO05D007699 5.0e-24 116.7 173 40.5
TPR.G27732 Trifolium pratense HOM05D006156 ORTHO05D007699 8.5e-24 115.9 127 47.2
HPP92_008817 Vanilla planifolia HOM05D006156 ORTHO05D007699 1.5e-23 115.2 405 47.7
ECA232G2615 Erigeron canadensis HOM05D006156 ORTHO05D007699 2.2e-19 101.3 103 43.7
Thhalv10010207m.g Eutrema salsugineum HOM05D006156 ORTHO05D007699 2.4e-18 97.8 102 51.0
RcHm_v2.0_Chr3g0472581 Rosa chinensis HOM05D002825 ORTHO05D003824 4.1e-18 97.1 185 35.7
PGSC0003DMG400009084 Solanum tuberosum HOM05D006156 ORTHO05D007699 2.0e-17 94.7 223 30.0
Lsat_1_v5_gn_7_77221 Lactuca sativa HOM05D002825 ORTHO05D003824 5.9e-17 93.2 185 31.4
Aqoxy6G01599 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 1.0e-16 92.4 177 34.5
Os05g0534000 Oryza sativa ssp. japonica HOM05D006156 ORTHO05D007699 1.9e-15 88.2 104 72.1
EL10As2g23245 Beta vulgaris HOM05D006156 ORTHO05D007699 2.5e-15 87.8 64 60.9
ECA236G4782 Erigeron canadensis HOM05D002825 ORTHO05D003824 4.2e-15 87.0 185 31.4
Potri.004G227800 Populus trichocarpa HOM05D002825 ORTHO05D003824 8.0e-14 82.8 185 30.8
PGR142G0082 Punica granatum HOM05D002825 ORTHO05D003824 1.0e-13 82.4 185 30.3
FAN04G1220 Fragaria x ananassa HOM05D002825 ORTHO05D003824 2.0e-12 78.2 185 30.3
FAN18G3010 Fragaria x ananassa HOM05D002825 ORTHO05D003824 2.0e-12 78.2 185 30.3
GSVIVG01023159001 Vitis vinifera HOM05D002825 ORTHO05D003824 3.4e-12 77.4 172 32.6
FAN08G2274 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.7e-11 75.1 185 29.2
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 3.7e-11 73.9 155 29.0
Eucgr.K00382 Eucalyptus grandis HOM05D006156 ORTHO05D007699 3.7e-11 73.9 185 38.9
MD15G1265700 Malus domestica HOM05D000891 ORTHO05D000761 1.4e-10 72.0 179 29.6
Glyma.16G001000 Glycine max HOM05D002825 ORTHO05D003824 2.4e-10 71.2 125 35.2
BcaB01g00735 Brassica carinata HOM05D006156 ORTHO05D007699 4.1e-10 70.5 60 53.3
RcHm_v2.0_Chr7g0220071 Rosa chinensis HOM05D002825 ORTHO05D003824 4.1e-10 70.5 185 29.2
SEGI_27186 Sequoiadendron giganteum HOM05D006156 ORTHO05D007699 7.0e-10 69.7 231 25.5
SEGI_04314 Sequoiadendron giganteum HOM05D006156 ORTHO05D007699 3.5e-09 67.4 125 34.4
TAR626G1006 Trochodendron aralioides HOM05D007251 ORTHO05D009266 4.5e-09 67.0 179 27.9
FvH4_5g27880 Fragaria vesca HOM05D002825 ORTHO05D003824 7.8e-09 66.2 125 34.4
Aqoxy6G00055 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 1.0e-08 65.9 116 35.3
Thhalv10006738m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 1.0e-08 65.9 125 31.2
Lalb_Chr18g0061131 Lupinus albus HOM05D002825 ORTHO05D003824 1.0e-08 65.9 185 27.6
DCAR_022278 Daucus carota HOM05D002825 ORTHO05D003824 1.3e-08 65.5 185 27.6
AL4G44550 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.3e-08 64.7 180 27.8
Lalb_Chr24g0402511 Lupinus albus HOM05D007251 ORTHO05D009266 2.3e-08 64.7 178 28.1
FvH4_2g36670 Fragaria vesca HOM05D007251 ORTHO05D009266 2.9e-08 64.3 178 29.2
AT5G28340 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 3.8e-08 63.9 178 30.3
AT5G28380 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 3.8e-08 63.9 178 30.3
Potri.003G002950 Populus trichocarpa HOM05D002825 ORTHO05D003824 5.0e-08 63.5 125 33.6
PSO782G5553 Papaver somniferum HOM05D007251 ORTHO05D009266 1.1e-07 62.4 182 29.7
Sabra01G0172800 Salix brachista HOM05D002825 ORTHO05D003824 1.5e-07 62.0 135 31.1
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 3.3e-07 60.8 190 28.4
Prupe.1G459800 Prunus persica HOM05D007251 ORTHO05D009266 3.3e-07 60.8 178 28.7
C07p48550 Brassica napus HOM05D002825 ORTHO05D003824 4.3e-07 60.5 180 27.2
Medtr7g069300 Medicago truncatula HOM05D002825 ORTHO05D003824 4.3e-07 60.5 164 26.8
Lj7C750G16 Lonicera japonica HOM05D007251 ORTHO05D009266 5.6e-07 60.1 175 26.9
MBI16_g41809_MAGBIO Magnolia biondii HOM05D007251 ORTHO05D009266 5.6e-07 60.1 181 25.4
Nitab4.5_0002023g0010 Nicotiana tabacum HOM05D007251 ORTHO05D009266 5.6e-07 60.1 178 27.5
MD08G1128000 Malus domestica HOM05D007251 ORTHO05D009266 7.3e-07 59.7 178 29.8
PSO063G0176 Papaver somniferum HOM05D007251 ORTHO05D009266 7.3e-07 59.7 182 29.1
Potri.006G211400 Populus trichocarpa HOM05D000001 ORTHO05D000003 7.3e-07 59.7 139 27.3
Glyma.12G164700 Glycine max HOM05D002825 ORTHO05D003824 9.5e-07 59.3 83 37.3
BolC7t45363H Brassica oleracea HOM05D002825 ORTHO05D003824 1.2e-06 58.9 184 27.2
VMungo0647G2138 Vigna mungo HOM05D007251 ORTHO05D009266 1.2e-06 58.9 175 28.0
HanXRQChr13g0388811 Helianthus annuus HOM05D000001 ORTHO05D000003 2.1e-06 58.2 137 29.2
Sabra06G0211800 Salix brachista HOM05D007251 ORTHO05D009266 2.1e-06 58.2 178 26.4
Sopen08g022660 Solanum pennellii HOM05D007251 ORTHO05D009266 2.1e-06 58.2 182 26.9
Thecc.05G091000 Theobroma cacao HOM05D000001 ORTHO05D000003 2.8e-06 57.8 139 28.1
CiPaw.08G020100 Carya illinoinensis HOM05D007251 ORTHO05D009266 3.6e-06 57.4 178 27.5
Thecc.05G053600 Theobroma cacao HOM05D000855 ORTHO05D008530 3.6e-06 57.4 139 25.9
Sabra06G0163000 Salix brachista HOM05D000001 ORTHO05D000003 4.7e-06 57.0 139 27.3
A05p25360 Brassica napus HOM05D000001 ORTHO05D000003 6.1e-06 56.6 132 28.0
BraA05t21421Z Brassica rapa HOM05D000001 ORTHO05D000003 6.1e-06 56.6 132 28.0
Ca_17359_v3 Cicer arietinum L. HOM05D002825 ORTHO05D003824 6.1e-06 56.6 80 35.0
BcaC06g33535 Brassica carinata HOM05D002825 ORTHO05D003824 8.0e-06 56.2 180 26.1
MD02G1305500 Malus domestica HOM05D000001 ORTHO05D000003 8.0e-06 56.2 176 25.0
Sp6g32780 Schrenkiella parvula HOM05D007251 ORTHO05D009266 8.0e-06 56.2 181 26.5
Zm00001eb310610 Zea mays HOM05D000181 ORTHO05D000003 8.0e-06 56.2 174 23.0


User provided reference genes

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