Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0244300 Oryza sativa ssp. japonica HOM05D001195 ORTHO05D001138 1.9e-127 459.1 227 100.0
Zm00001eb151550 Zea mays HOM05D001195 ORTHO05D001138 3.7e-62 242.3 230 58.7
Os12g0209300 Oryza sativa ssp. japonica HOM05D001195 ORTHO05D001138 1.8e-48 196.8 233 49.4
Zm00001eb411140 Zea mays HOM05D001195 ORTHO05D001138 2.6e-39 166.4 231 39.4
CsaV3_3G006750 Cucumis sativus L. HOM05D001195 ORTHO05D001138 4.1e-21 105.9 233 35.2
MELO3C016434.2 Cucumis melo HOM05D001195 ORTHO05D001138 7.0e-21 105.1 231 35.5
ClCG10G007550 Citrullus lanatus HOM05D001195 ORTHO05D001138 3.5e-20 102.8 233 35.2
Atru.chr6.140 Acer truncatum HOM05D001195 ORTHO05D001138 4.5e-20 102.4 245 34.7
CDE02G2658 Ceratophyllum demersum HOM05D001195 ORTHO05D001138 1.1e-18 97.8 238 34.9
Sed0022831 Sechium edule HOM05D001195 ORTHO05D001138 3.3e-18 96.3 235 34.9
Ciclev10000047m.g Citrus clementina HOM05D001195 ORTHO05D001138 2.8e-17 93.2 248 31.5
CDE04G2297 Ceratophyllum demersum HOM05D001195 ORTHO05D001138 3.6e-17 92.8 244 34.0
Cc02_g23760 Coffea canephora HOM05D001195 ORTHO05D001138 6.1e-17 92.0 243 32.5
MBI06_g17066_MAGBIO Magnolia biondii HOM05D001195 ORTHO05D001138 6.1e-17 92.0 152 40.1
THA.LOC104805130 Tarenaya hassleriana HOM05D001195 ORTHO05D001138 8.0e-17 91.7 169 40.2
PSO447G0240 Papaver somniferum HOM05D001195 ORTHO05D001138 1.0e-16 91.3 235 35.7
PGR142G3909 Punica granatum HOM05D001195 ORTHO05D001138 1.0e-16 91.3 243 31.3
Dinv38444 Davidia involucrata HOM05D001195 ORTHO05D001138 1.4e-16 90.9 247 30.4
Potri.004G230300 Populus trichocarpa HOM05D001195 ORTHO05D001138 3.0e-16 89.7 239 33.5
Sabra01G0175600 Salix brachista HOM05D001195 ORTHO05D001138 3.0e-16 89.7 143 39.2
QL02p103695 Quercus lobata HOM05D001195 ORTHO05D001138 4.0e-16 89.4 230 32.2
PSO210G3331 Papaver somniferum HOM05D001195 ORTHO05D001138 5.2e-16 89.0 231 35.1
Haze_09962 Corylus avellana HOM05D001195 ORTHO05D001138 6.8e-16 88.6 238 33.2
TAR381G0431 Trochodendron aralioides HOM05D001195 ORTHO05D001138 6.8e-16 88.6 164 36.6
TWI59G1151 Tripterygium wilfordii HOM05D001195 ORTHO05D001138 1.5e-15 87.4 242 33.1
CSS0023410 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 2.6e-15 86.7 233 32.2
PGSC0003DMG400018259 Solanum tuberosum HOM05D001195 ORTHO05D001138 2.6e-15 86.7 244 31.1
Potri.003G044900 Populus trichocarpa HOM05D001195 ORTHO05D001138 3.4e-15 86.3 231 32.0
Cfa004422 Carpinus fangiana HOM05D001195 ORTHO05D001138 5.7e-15 85.5 244 30.3
Nn5g27132 Nelumbo nucifera HOM05D001195 ORTHO05D001138 5.7e-15 85.5 159 36.5
Sed0006113 Sechium edule HOM05D001195 ORTHO05D001138 5.7e-15 85.5 234 33.3
Sopen01g045210 Solanum pennellii HOM05D001195 ORTHO05D001138 5.7e-15 85.5 247 31.2
arahy.Tifrunner.gnm1.ann1.HJZ3ZC Arachis hypogaea HOM05D001195 ORTHO05D001138 9.8e-15 84.7 125 44.0
Oeu010606.1 Olea europaea HOM05D001195 ORTHO05D001138 9.8e-15 84.7 159 33.3
Solyc01g102810.3 Solanum lycopersicum HOM05D001195 ORTHO05D001138 1.7e-14 84.0 247 30.8
DCAR_001734 Daucus carota HOM05D001195 ORTHO05D001138 2.2e-14 83.6 144 37.5
CAN.G1379.9 Capsicum annuum HOM05D001195 ORTHO05D001138 2.9e-14 83.2 245 29.8
CiPaw.06G176900 Carya illinoinensis HOM05D001195 ORTHO05D001138 3.7e-14 82.8 233 31.8
AUR62032487 Chenopodium quinoa HOM05D001195 ORTHO05D001138 3.7e-14 82.8 233 30.0
Dinv29651 Davidia involucrata HOM05D001195 ORTHO05D001138 4.9e-14 82.4 247 31.2
Gohir.D10G083300 Gossypium hirsutum HOM05D001195 ORTHO05D001138 4.9e-14 82.4 136 39.7
Gorai.011G090600 Gossypium raimondii HOM05D001195 ORTHO05D001138 4.9e-14 82.4 136 39.7
Hma1.2p1_0157F.1_g069180 Hydrangea macrophylla HOM05D001195 ORTHO05D001138 4.9e-14 82.4 238 29.8
Actinidia11728 Actinidia chinensis HOM05D001195 ORTHO05D001138 6.4e-14 82.0 150 38.7
Prupe.1G586700 Prunus persica HOM05D001195 ORTHO05D001138 6.4e-14 82.0 155 34.8
Lj9A253G54 Lonicera japonica HOM05D001195 ORTHO05D001138 8.3e-14 81.6 142 36.6
EL10Ac6g13960 Beta vulgaris HOM05D001195 ORTHO05D001138 1.4e-13 80.9 232 30.2
AUR62042245 Chenopodium quinoa HOM05D001195 ORTHO05D001138 1.4e-13 80.9 233 29.6
Eucgr.I02805 Eucalyptus grandis HOM05D001195 ORTHO05D001138 1.4e-13 80.9 148 38.5
Rhsim11G0115200 Rhododendron simsii HOM05D001195 ORTHO05D001138 1.4e-13 80.9 238 31.9
TWI23G0013 Tripterygium wilfordii HOM05D001195 ORTHO05D001138 1.8e-13 80.5 234 30.3
Gohir.A10G157700 Gossypium hirsutum HOM05D001195 ORTHO05D001138 2.4e-13 80.1 249 30.9
Lalb_Chr13g0304431 Lupinus albus HOM05D001195 ORTHO05D001138 2.4e-13 80.1 240 34.2
Manes.14G146300 Manihot esculenta HOM05D001195 ORTHO05D001138 2.4e-13 80.1 260 29.6
vmacro01625 Vaccinium macrocarpon HOM05D001195 ORTHO05D001138 3.2e-13 79.7 190 34.7
MSTRG.27887 Avicennia marina HOM05D001195 ORTHO05D001138 4.1e-13 79.3 152 34.9
Duzib160G0423 Durio zibethinus HOM05D001195 ORTHO05D001138 4.1e-13 79.3 164 34.1
Thecc.06G063600 Theobroma cacao HOM05D001195 ORTHO05D001138 9.2e-13 78.2 166 34.9
HPP92_023740 Vanilla planifolia HOM05D001195 ORTHO05D001138 1.2e-12 77.8 258 31.0
MSTRG.5186 Avicennia marina HOM05D001195 ORTHO05D001138 1.6e-12 77.4 165 35.8
GSVIVG01023130001 Vitis vinifera HOM05D001195 ORTHO05D001138 1.6e-12 77.4 143 32.9
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.0e-12 77.0 244 29.5
AL5G11750 Arabidopsis lyrata HOM05D001195 ORTHO05D001138 2.0e-12 77.0 132 40.2
Cpa.g.sc173.1 Carica papaya HOM05D001195 ORTHO05D001138 2.0e-12 77.0 254 31.1
Ca_13522_v3 Cicer arietinum L. HOM05D001195 ORTHO05D001138 2.0e-12 77.0 239 36.0
FAN08G1514 Fragaria x ananassa HOM05D001195 ORTHO05D001138 2.0e-12 77.0 243 32.1
TPR.G5938 Trifolium pratense HOM05D001195 ORTHO05D001138 2.7e-12 76.6 158 37.3
Aqoxy6G00016 Aquilegia oxysepala HOM05D001195 ORTHO05D001138 3.5e-12 76.3 239 27.6
CANSAT01G3051 Cannabis sativa HOM05D001195 ORTHO05D001138 4.6e-12 75.9 138 33.3
Peaxi162Scf00194g01049 Petunia axillaris HOM05D001195 ORTHO05D001138 4.6e-12 75.9 242 30.2
Lj4g0024332 Lotus japonicus HOM05D001195 ORTHO05D001138 7.8e-12 75.1 234 32.1
MD08G1249500 Malus domestica HOM05D001195 ORTHO05D001138 7.8e-12 75.1 152 31.6
Oeu043597.1 Olea europaea HOM05D001195 ORTHO05D001138 7.8e-12 75.1 232 31.9
Psat0s2555g0240 Pisum sativum HOM05D001195 ORTHO05D001138 7.8e-12 75.1 231 32.5
Glyma.07G271700 Glycine max HOM05D001195 ORTHO05D001138 1.0e-11 74.7 231 30.7
Aa31LG2G7640 Aethionema arabicum HOM05D001195 ORTHO05D001138 1.3e-11 74.3 162 34.6
Carub.0005s0149 Capsella rubella HOM05D001195 ORTHO05D001138 1.3e-11 74.3 133 39.8
VMungo1215G0189 Vigna mungo HOM05D001195 ORTHO05D001138 1.3e-11 74.3 231 30.7
FvH4_5g27450 Fragaria vesca HOM05D001195 ORTHO05D001138 1.7e-11 73.9 243 31.7
FAN13G2666 Fragaria x ananassa HOM05D001195 ORTHO05D001138 1.7e-11 73.9 243 31.7
FAN18G2953 Fragaria x ananassa HOM05D001195 ORTHO05D001138 1.7e-11 73.9 243 31.7
Glyma.17G002500 Glycine max HOM05D001195 ORTHO05D001138 1.7e-11 73.9 231 30.7
Manes.06G013800 Manihot esculenta HOM05D001195 ORTHO05D001138 1.7e-11 73.9 250 30.0
CARHR145020 Cardamine hirsuta HOM05D001195 ORTHO05D001138 2.3e-11 73.6 166 35.5
Nitab4.5_0001085g0120 Nicotiana tabacum HOM05D001195 ORTHO05D001138 2.3e-11 73.6 140 32.1
Hund15285 Selenicereus undatus HOM05D001195 ORTHO05D001138 2.3e-11 73.6 151 35.8
Medtr4g134530 Medicago truncatula HOM05D001195 ORTHO05D001138 3.0e-11 73.2 167 36.5
RcHm_v2.0_Chr7g0218871 Rosa chinensis HOM05D001195 ORTHO05D001138 3.0e-11 73.2 153 34.6
AT2G02480 Arabidopsis thaliana HOM05D001195 ORTHO05D001138 3.9e-11 72.8 132 39.4
Duzib192G0212 Durio zibethinus HOM05D001195 ORTHO05D001138 3.9e-11 72.8 143 36.4
Thhalv10003531m.g Eutrema salsugineum HOM05D001195 ORTHO05D001138 3.9e-11 72.8 133 38.3
MSTRG.20342 Avicennia marina HOM05D001195 ORTHO05D001138 5.0e-11 72.4 237 29.1
C02p50640 Brassica napus HOM05D001195 ORTHO05D001138 8.6e-11 71.6 128 37.5
DCAR_003272 Daucus carota HOM05D001195 ORTHO05D001138 1.1e-10 71.2 163 33.1
FAN04G1500 Fragaria x ananassa HOM05D001195 ORTHO05D001138 1.5e-10 70.9 243 30.9
Phvul.003G090800 Phaseolus vulgaris HOM05D001195 ORTHO05D001138 1.5e-10 70.9 231 30.3
Sp2g13710 Schrenkiella parvula HOM05D001195 ORTHO05D001138 1.5e-10 70.9 154 35.7
Sc07g0003280 Simmondsia chinensis HOM05D001195 ORTHO05D001138 1.5e-10 70.9 146 34.9
BcaC06g31230 Brassica carinata HOM05D001195 ORTHO05D001138 1.9e-10 70.5 165 34.5
BraA02t08311Z Brassica rapa HOM05D001195 ORTHO05D001138 1.9e-10 70.5 125 40.0
Nitab4.5_0006159g0040 Nicotiana tabacum HOM05D001195 ORTHO05D001138 1.9e-10 70.5 217 27.6
Sp1g12830 Schrenkiella parvula HOM05D001195 ORTHO05D001138 1.9e-10 70.5 154 33.1
COL.COLO4_31209 Corchorus olitorius HOM05D001195 ORTHO05D001138 3.3e-10 69.7 224 29.0
DCAR_032000 Daucus carota HOM05D001195 ORTHO05D001138 3.3e-10 69.7 139 35.3
ECA236G0676 Erigeron canadensis HOM05D001195 ORTHO05D001138 3.3e-10 69.7 207 32.9
Thhalv10006609m.g Eutrema salsugineum HOM05D001195 ORTHO05D001138 5.6e-10 68.9 155 34.8
BcaC03g17144 Brassica carinata HOM05D001195 ORTHO05D001138 9.5e-10 68.2 126 37.3
A02p32910 Brassica napus HOM05D001195 ORTHO05D001138 2.1e-09 67.0 156 35.3
A06p43600 Brassica napus HOM05D001195 ORTHO05D001138 3.6e-09 66.2 165 33.9
BraA06t27243Z Brassica rapa HOM05D001195 ORTHO05D001138 3.6e-09 66.2 165 33.9
Lalb_Chr07g0176841 Lupinus albus HOM05D001195 ORTHO05D001138 3.6e-09 66.2 150 36.0
Sabra03G0021800 Salix brachista HOM05D001195 ORTHO05D001138 6.2e-09 65.5 168 31.0
ATR1089G146 Amborella trichopoda HOM05D001195 ORTHO05D001138 8.0e-09 65.1 118 35.6
BolC2t11147H Brassica oleracea HOM05D001195 ORTHO05D001138 2.3e-08 63.5 104 41.3
Lsat_1_v5_gn_9_83160 Lactuca sativa HOM05D001195 ORTHO05D001138 3.1e-08 63.2 96 39.6
BcaC06g34050 Brassica carinata HOM05D001195 ORTHO05D001138 4.0e-08 62.8 238 31.5
C07p33260 Brassica napus HOM05D001195 ORTHO05D001138 4.0e-08 62.8 238 31.5
BolC7t43837H Brassica oleracea HOM05D001195 ORTHO05D001138 4.0e-08 62.8 238 31.5
Lj9A228G12 Lonicera japonica HOM05D001195 ORTHO05D001138 8.9e-08 61.6 116 35.3
HanXRQChr13g0392341 Helianthus annuus HOM05D001195 ORTHO05D001138 1.5e-07 60.8 111 38.7
PSO017G3776 Papaver somniferum HOM05D001195 ORTHO05D001138 1.5e-07 60.8 243 25.9
PSO170G6121 Papaver somniferum HOM05D001195 ORTHO05D001138 2.6e-07 60.1 246 28.0
unitig_699.g19838 Utricularia gibba HOM05D001195 ORTHO05D001138 1.3e-06 57.8 129 31.0
HanXRQChr15g0469651 Helianthus annuus HOM05D001195 ORTHO05D001138 3.7e-06 56.2 124 36.3
SEGI_40104 Sequoiadendron giganteum HOM05D001195 ORTHO05D001138 6.4e-06 55.5 73 46.6


User provided reference genes

Program Settings